Wall clock time and date at job start Tue Mar 31 2020 15:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47530 * 2 1 4 4 C 1.50694 * 109.47426 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99923 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00035 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00061 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.44744 * 35.04278 * 7 6 4 9 9 C 1.53039 * 109.46416 * 275.07235 * 7 6 4 10 10 C 1.53620 * 109.24437 * 178.48702 * 9 7 6 11 11 N 1.46928 * 108.53888 * 54.85908 * 10 9 7 12 12 C 1.34779 * 120.62856 * 126.37107 * 11 10 9 13 13 O 1.21282 * 119.99922 * 179.72064 * 12 11 10 14 14 C 1.50699 * 120.00037 * 359.71632 * 12 11 10 15 15 S 1.81000 * 109.46881 * 180.02562 * 14 12 11 16 16 C 1.76206 * 99.99929 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99720 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99847 * 180.02562 * 16 15 14 19 19 N 1.31638 * 119.99705 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00469 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46939 * 90.00148 * 20 18 16 22 22 H 1.48496 * 109.47561 * 210.00294 * 20 18 16 23 23 H 1.48498 * 109.46932 * 330.00626 * 20 18 16 24 24 C 1.46924 * 118.73884 * 306.09282 * 11 10 9 25 25 C 1.53041 * 109.45977 * 155.00407 * 7 6 4 26 26 H 1.08999 * 109.52313 * 61.41876 * 25 7 6 27 27 C 1.52995 * 109.49883 * 301.34148 * 25 7 6 28 28 H 1.09002 * 109.46470 * 299.99816 * 1 2 3 29 29 H 1.09003 * 109.46710 * 59.99512 * 1 2 3 30 30 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47165 * 240.00280 * 2 1 3 32 32 H 1.08997 * 109.47554 * 120.00469 * 2 1 3 33 33 H 1.09007 * 109.46668 * 59.99976 * 3 2 1 34 34 H 1.09007 * 109.47125 * 300.00631 * 3 2 1 35 35 H 0.97003 * 120.00056 * 0.02562 * 6 4 3 36 36 H 1.08997 * 109.49876 * 298.56703 * 9 7 6 37 37 H 1.09009 * 109.49496 * 58.66512 * 9 7 6 38 38 H 1.09001 * 109.74495 * 295.12635 * 10 9 7 39 39 H 1.08996 * 109.66761 * 174.55234 * 10 9 7 40 40 H 1.09000 * 109.47247 * 60.00371 * 14 12 11 41 41 H 1.09001 * 109.47358 * 299.99798 * 14 12 11 42 42 H 0.96996 * 119.99710 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.58588 * 173.65209 * 24 11 10 44 44 H 1.08999 * 109.58627 * 294.07051 * 24 11 10 45 45 H 1.09009 * 109.47336 * 300.16005 * 27 25 7 46 46 H 1.09003 * 109.47413 * 60.15938 * 27 25 7 47 47 H 1.08995 * 109.47647 * 180.16113 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 8 4.1535 0.3921 0.0006 6 7 4.2210 2.6096 0.0002 7 6 5.6860 2.6096 0.0014 8 1 6.0493 1.7676 -0.5878 9 6 6.1947 2.4832 1.4392 10 6 7.7305 2.4455 1.4314 11 7 8.2233 3.6326 0.7195 12 6 9.1171 4.4587 1.2985 13 8 9.5201 5.4326 0.6984 14 6 9.6158 4.1722 2.6914 15 16 10.7957 5.4529 3.1851 16 6 11.2048 4.8851 4.8021 17 1 10.7491 3.9861 5.1901 18 6 12.1120 5.5937 5.5776 19 7 12.4173 5.1697 6.7859 20 14 12.8997 7.1489 4.9068 21 1 12.0600 8.3214 5.2608 22 1 14.2526 7.3128 5.4968 23 1 13.0127 7.0490 3.4295 24 6 7.7278 3.8987 -0.6379 25 6 6.1963 3.9169 -0.6090 26 1 5.8538 4.7583 -0.0066 27 6 5.6603 4.0582 -2.0350 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9564 -0.8900 35 1 3.7360 3.4497 -0.0001 36 1 5.8523 3.3377 2.0228 37 1 5.8117 1.5632 1.8811 38 1 8.0741 1.5452 0.9220 39 1 8.1028 2.4530 2.4557 40 1 10.1068 3.1992 2.7086 41 1 8.7746 4.1670 3.3846 42 1 13.0515 5.6647 7.3276 43 1 8.0984 4.8652 -0.9792 44 1 8.0713 3.1144 -1.3125 45 1 6.0021 3.2160 -2.6368 46 1 4.5706 4.0711 -2.0140 47 1 6.0263 4.9880 -2.4704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073636054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:06 Heat of formation + Delta-G solvation = -118.423435 kcal Electronic energy + Delta-G solvation = -25824.811684 eV Core-core repulsion = 22131.860117 eV Total energy + Delta-G solvation = -3692.951567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.60291 -40.63000 -38.73589 -35.92945 -35.22352 -34.67844 -34.06958 -32.22263 -31.09149 -28.92058 -27.92285 -27.36439 -25.78136 -23.62178 -22.68866 -21.70844 -21.20286 -20.49255 -19.55853 -18.37242 -17.91012 -17.21971 -17.16114 -16.97230 -16.77840 -16.59441 -15.77450 -15.59959 -15.10563 -15.08159 -14.92261 -14.87998 -14.50180 -14.44924 -13.92388 -13.74456 -13.56958 -13.36430 -13.23373 -13.02919 -12.96828 -12.86736 -12.81255 -12.62235 -12.42276 -12.17011 -12.00860 -11.99220 -11.87093 -11.60951 -11.51468 -11.17699 -10.98645 -10.82665 -10.54124 -10.05410 -9.77620 -9.01154 -8.52077 -6.23350 0.96173 1.30879 1.45129 1.47789 1.53232 1.70057 2.01405 2.21717 2.24541 2.66574 2.85990 3.40683 3.60444 3.72880 3.82644 3.85199 3.98042 4.06937 4.14780 4.15824 4.20306 4.31127 4.37437 4.42990 4.56983 4.62911 4.66645 4.70461 4.73750 4.77004 4.80280 4.87725 4.92288 5.01032 5.05229 5.19898 5.26080 5.29815 5.31794 5.45374 5.48940 5.53625 5.70082 6.10670 6.18142 6.60276 6.92816 7.03873 7.31705 8.60264 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022236 B = 0.002317 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.937215 B =12080.549731 C =12933.743178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.135 4.135 4 C 0.508 3.492 5 O -0.585 6.585 6 N -0.714 5.714 7 C 0.156 3.844 8 H 0.078 0.922 9 C -0.137 4.137 10 C 0.105 3.895 11 N -0.605 5.605 12 C 0.537 3.463 13 O -0.559 6.559 14 C -0.109 4.109 15 S -0.173 6.173 16 C -0.529 4.529 17 H 0.062 0.938 18 C 0.045 3.955 19 N -0.916 5.916 20 Si 0.915 3.085 21 H -0.261 1.261 22 H -0.259 1.259 23 H -0.237 1.237 24 C 0.117 3.883 25 C -0.100 4.100 26 H 0.081 0.919 27 C -0.139 4.139 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.415 0.585 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.277 0.723 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.226 -6.660 -18.176 31.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.174 4.174 4 C 0.297 3.703 5 O -0.465 6.465 6 N -0.365 5.365 7 C 0.051 3.949 8 H 0.096 0.904 9 C -0.176 4.176 10 C -0.018 4.018 11 N -0.339 5.339 12 C 0.325 3.675 13 O -0.438 6.438 14 C -0.259 4.259 15 S 0.054 5.946 16 C -0.676 4.676 17 H 0.080 0.920 18 C -0.161 4.161 19 N -0.554 5.554 20 Si 0.737 3.263 21 H -0.186 1.186 22 H -0.183 1.183 23 H -0.161 1.161 24 C -0.006 4.006 25 C -0.120 4.120 26 H 0.099 0.901 27 C -0.197 4.197 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.252 0.748 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.121 -5.964 -18.899 31.218 hybrid contribution 0.159 -0.442 1.281 1.364 sum -23.962 -6.406 -17.619 30.424 Atomic orbital electron populations 1.21764 0.93923 1.02238 1.02694 1.21253 0.96547 0.95179 1.01904 1.21766 0.89175 0.99941 1.06528 1.21372 0.91608 0.83046 0.74303 1.90704 1.71611 1.32942 1.51287 1.46002 1.06446 1.09213 1.74863 1.20825 0.80391 0.98174 0.95539 0.90375 1.22312 0.94435 1.03201 0.97703 1.22002 0.94250 0.87136 0.98408 1.48086 1.42744 1.25992 1.17079 1.19961 0.78572 0.82090 0.86918 1.90672 1.58389 1.29548 1.65181 1.23295 1.02436 1.03313 0.96881 1.84676 1.54779 1.37076 1.18111 1.22447 1.30864 1.14400 0.99939 0.92022 1.25578 0.95649 1.00511 0.94317 1.70020 1.34270 1.41112 1.10009 0.85856 0.79264 0.79816 0.81371 1.18593 1.18336 1.16086 1.21761 0.93440 1.03202 0.82179 1.21670 0.94197 0.97136 0.99013 0.90054 1.21731 1.01915 1.02506 0.93535 0.91852 0.91572 0.92642 0.92853 0.93171 0.86865 0.86404 0.74837 0.90948 0.90442 0.89545 0.89019 0.87238 0.87143 0.91360 0.89830 0.89961 0.92347 0.90647 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 71.98 0.71 -0.41 16 2 C -0.11 -1.31 5.22 30.60 0.16 -1.15 16 3 C -0.13 -1.11 5.70 29.85 0.17 -0.94 16 4 C 0.51 7.77 7.79 87.66 0.68 8.45 16 5 O -0.59 -14.54 15.64 -3.04 -0.05 -14.59 16 6 N -0.71 -8.14 4.37 -442.41 -1.93 -10.08 16 7 C 0.16 2.37 1.88 45.02 0.08 2.45 16 8 H 0.08 1.46 7.58 -2.38 -0.02 1.44 16 9 C -0.14 -2.41 5.67 30.82 0.17 -2.23 16 10 C 0.10 2.13 6.37 86.51 0.55 2.68 16 11 N -0.61 -15.24 2.97 -818.08 -2.43 -17.67 16 12 C 0.54 18.81 7.72 87.66 0.68 19.49 16 13 O -0.56 -23.77 15.27 -3.04 -0.05 -23.81 16 14 C -0.11 -4.16 4.50 71.24 0.32 -3.84 16 15 S -0.17 -8.78 18.55 -56.49 -1.05 -9.82 16 16 C -0.53 -30.87 10.04 67.95 0.68 -30.19 16 17 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 18 C 0.04 2.64 5.50 84.86 0.47 3.11 16 19 N -0.92 -55.85 13.97 21.65 0.30 -55.55 16 20 Si 0.92 45.01 27.74 68.60 1.90 46.91 16 21 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 24 C 0.12 2.37 5.71 86.36 0.49 2.86 16 25 C -0.10 -1.44 2.46 -10.72 -0.03 -1.46 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 C -0.14 -1.45 9.02 71.98 0.65 -0.80 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.79 8.10 -2.38 -0.02 0.77 16 32 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 33 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.41 2.39 8.31 -92.71 -0.77 1.62 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.94 5.93 -2.39 -0.01 1.93 16 40 H 0.11 3.93 7.93 -2.39 -0.02 3.91 16 41 H 0.11 3.92 7.70 -2.40 -0.02 3.90 16 42 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.08 2.02 7.01 -2.39 -0.02 2.01 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.07 0.55 7.37 -2.39 -0.02 0.53 16 47 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -77.53 389.02 2.65 -74.88 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.14 Total: 11.70 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 5.80 Total: -1.98 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -4.06 Total: -83.29 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.09 Total: -38.40 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.82 kcal Total: -77.53 2.65 -74.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073636054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.540 kcal (2) G-P(sol) polarization free energy of solvation -77.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds