Wall clock time and date at job start Tue Mar 31 2020 15:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 C 1.50704 * 109.46804 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00126 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99796 * 179.97438 * 4 3 2 7 7 C 1.46926 * 120.63009 * 0.02562 * 6 4 3 8 8 C 1.53192 * 108.77820 * 126.41120 * 7 6 4 9 9 C 1.53043 * 109.30860 * 54.63429 * 8 7 6 10 10 H 1.08997 * 109.44548 * 178.62000 * 9 8 7 11 11 N 1.46499 * 109.46220 * 58.65768 * 9 8 7 12 12 C 1.34779 * 120.00072 * 84.92823 * 11 9 8 13 13 O 1.21280 * 120.00063 * 0.02562 * 12 11 9 14 14 C 1.50696 * 119.99955 * 180.02562 * 12 11 9 15 15 S 1.81002 * 109.47154 * 180.02562 * 14 12 11 16 16 C 1.76205 * 99.99907 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00083 * 359.97438 * 16 15 14 18 18 C 1.38794 * 119.99744 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00234 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00311 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47064 * 89.99650 * 20 18 16 22 22 H 1.48502 * 109.47226 * 209.99765 * 20 18 16 23 23 H 1.48498 * 109.46965 * 329.99973 * 20 18 16 24 24 C 1.53037 * 109.53919 * 298.63563 * 9 8 7 25 25 H 1.08997 * 109.49928 * 301.41588 * 24 9 8 26 26 C 1.53006 * 109.52466 * 181.33623 * 24 9 8 27 27 C 1.46925 * 120.63076 * 180.02562 * 6 4 3 28 28 H 1.08998 * 109.47245 * 299.99917 * 1 2 3 29 29 H 1.09000 * 109.46939 * 60.00061 * 1 2 3 30 30 H 1.09001 * 109.46942 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47245 * 240.00083 * 2 1 3 32 32 H 1.08996 * 109.47414 * 119.99913 * 2 1 3 33 33 H 1.08998 * 109.47101 * 59.99995 * 3 2 1 34 34 H 1.09007 * 109.46900 * 299.99700 * 3 2 1 35 35 H 1.09006 * 109.58406 * 246.20036 * 7 6 4 36 36 H 1.09002 * 109.59019 * 6.62024 * 7 6 4 37 37 H 1.09001 * 109.49595 * 174.58602 * 8 7 6 38 38 H 1.09000 * 109.49611 * 294.68450 * 8 7 6 39 39 H 0.96996 * 119.99856 * 264.93136 * 11 9 8 40 40 H 1.09003 * 109.47274 * 300.00199 * 14 12 11 41 41 H 1.08998 * 109.47588 * 59.99831 * 14 12 11 42 42 H 0.97008 * 120.00458 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.46525 * 300.14282 * 26 24 9 44 44 H 1.08998 * 109.46907 * 60.14124 * 26 24 9 45 45 H 1.08994 * 109.46910 * 180.14611 * 26 24 9 46 46 H 1.08998 * 109.58340 * 353.37494 * 27 6 4 47 47 H 1.09003 * 109.58494 * 113.66059 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2209 2.6098 -0.0013 7 6 3.5003 3.8902 -0.0008 8 6 4.0096 4.7422 1.1660 9 6 5.5309 4.8772 1.0678 10 1 5.8931 5.5034 1.8831 11 7 5.8847 5.4920 -0.2141 12 6 5.8855 6.8339 -0.3404 13 8 5.5938 7.5324 0.6072 14 6 6.2488 7.4663 -1.6591 15 16 6.1587 9.2679 -1.5094 16 6 6.6185 9.7342 -3.1453 17 1 6.8501 8.9754 -3.8781 18 6 6.6830 11.0766 -3.4919 19 7 7.0270 11.4250 -4.7138 20 14 6.2830 12.3890 -2.2242 21 1 7.5219 12.7721 -1.5007 22 1 5.7196 13.5813 -2.9069 23 1 5.2897 11.8567 -1.2572 24 6 6.1749 3.4922 1.1638 25 1 5.8919 3.0240 2.1066 26 6 7.6973 3.6305 1.0991 27 6 5.6901 2.6260 -0.0025 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8901 35 1 3.6815 4.4118 -0.9406 36 1 2.4322 3.7084 0.1185 37 1 3.5530 5.7310 1.1209 38 1 3.7470 4.2623 2.1087 39 1 6.1182 4.9334 -0.9718 40 1 7.2625 7.1752 -1.9347 41 1 5.5528 7.1299 -2.4275 42 1 7.0724 12.3632 -4.9560 43 1 7.9796 4.0997 0.1566 44 1 8.0417 4.2470 1.9294 45 1 8.1549 2.6435 1.1650 46 1 6.0667 1.6100 0.1158 47 1 6.0501 3.0420 -0.9434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073745472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:09 Heat of formation + Delta-G solvation = -114.786128 kcal Electronic energy + Delta-G solvation = -26180.801742 eV Core-core repulsion = 22488.007900 eV Total energy + Delta-G solvation = -3692.793842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78536 -40.54371 -38.75850 -35.61962 -35.31480 -34.66233 -33.92324 -32.55539 -30.38587 -29.45841 -27.86035 -27.28796 -26.08680 -23.55102 -22.77434 -22.13294 -20.87599 -19.93611 -19.70945 -18.27526 -17.82317 -17.29144 -17.06699 -17.01974 -16.78164 -16.44033 -15.84073 -15.44506 -15.36927 -15.11289 -14.93083 -14.71407 -14.68746 -14.44380 -13.94490 -13.78837 -13.60629 -13.32775 -13.12672 -13.01276 -12.93381 -12.84976 -12.73561 -12.60857 -12.49033 -12.12689 -11.99822 -11.88919 -11.85708 -11.62975 -11.55329 -11.16267 -10.94239 -10.80893 -10.51697 -10.13278 -9.66414 -8.97306 -8.50537 -6.20797 1.00861 1.32468 1.47719 1.57285 1.60568 1.61022 1.95575 2.23757 2.27744 2.73135 2.87846 3.43049 3.63339 3.72890 3.82118 3.89641 3.97473 4.02953 4.11675 4.19714 4.24632 4.29786 4.42030 4.49922 4.53850 4.61454 4.68892 4.69437 4.73880 4.78668 4.82866 4.88328 4.96473 5.05282 5.08250 5.10999 5.23752 5.27827 5.29488 5.44750 5.50747 5.52976 5.71523 6.12626 6.35185 6.46834 6.94742 7.14573 7.21730 8.61800 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.002521 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.116781 B =11102.525766 C =11720.787334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.137 4.137 4 C 0.510 3.490 5 O -0.586 6.586 6 N -0.609 5.609 7 C 0.108 3.892 8 C -0.142 4.142 9 C 0.151 3.849 10 H 0.077 0.923 11 N -0.705 5.705 12 C 0.541 3.459 13 O -0.557 6.557 14 C -0.114 4.114 15 S -0.171 6.171 16 C -0.528 4.528 17 H 0.061 0.939 18 C 0.044 3.956 19 N -0.918 5.918 20 Si 0.915 3.085 21 H -0.264 1.264 22 H -0.261 1.261 23 H -0.234 1.234 24 C -0.097 4.097 25 H 0.093 0.907 26 C -0.145 4.145 27 C 0.112 3.888 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.410 0.590 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.276 0.724 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.843 -22.295 12.308 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.176 4.176 4 C 0.300 3.700 5 O -0.467 6.467 6 N -0.342 5.342 7 C -0.014 4.014 8 C -0.182 4.182 9 C 0.047 3.953 10 H 0.095 0.905 11 N -0.360 5.360 12 C 0.327 3.673 13 O -0.434 6.434 14 C -0.264 4.264 15 S 0.055 5.945 16 C -0.676 4.676 17 H 0.079 0.921 18 C -0.162 4.162 19 N -0.556 5.556 20 Si 0.737 3.263 21 H -0.188 1.188 22 H -0.185 1.185 23 H -0.158 1.158 24 C -0.116 4.116 25 H 0.111 0.889 26 C -0.203 4.203 27 C -0.011 4.011 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.247 0.753 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.980 -21.571 13.734 27.451 hybrid contribution 0.815 -0.107 -1.588 1.788 sum -9.165 -21.678 12.146 26.485 Atomic orbital electron populations 1.21766 0.93856 1.02346 1.02670 1.21250 0.96586 0.94808 1.02000 1.21825 0.89411 1.00207 1.06199 1.21354 0.91663 0.82515 0.74428 1.90672 1.71505 1.32439 1.52036 1.48233 1.06823 1.06339 1.72756 1.21865 0.97949 0.82602 0.98968 1.22263 0.95198 1.00776 0.99918 1.20995 0.94886 0.93547 0.85915 0.90521 1.45863 1.70202 1.05003 1.14902 1.19817 0.76177 0.82847 0.88462 1.90694 1.48840 1.62794 1.41112 1.23284 1.06583 0.97458 0.99120 1.84674 1.90789 1.02354 1.16652 1.22477 1.52875 0.96025 0.96237 0.92075 1.25585 0.93384 1.00109 0.97073 1.70021 1.47015 1.18869 1.19706 0.85856 0.80748 0.79586 0.80107 1.18845 1.18525 1.15793 1.21647 0.96546 0.93487 0.99958 0.88864 1.21761 0.93328 1.02614 1.02613 1.21652 0.79712 1.01399 0.98349 0.91692 0.91890 0.92379 0.92954 0.92742 0.86686 0.87014 0.90957 0.86987 0.90941 0.89155 0.75293 0.87270 0.86943 0.91427 0.92292 0.92300 0.91158 0.89685 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.62 16 2 C -0.11 -1.43 5.22 30.60 0.16 -1.28 16 3 C -0.14 -1.51 4.05 29.85 0.12 -1.39 16 4 C 0.51 9.15 7.70 87.66 0.67 9.82 16 5 O -0.59 -15.38 15.39 -3.02 -0.05 -15.43 16 6 N -0.61 -9.03 2.97 -818.96 -2.43 -11.47 16 7 C 0.11 1.31 6.08 86.36 0.53 1.84 16 8 C -0.14 -2.12 5.77 30.67 0.18 -1.94 16 9 C 0.15 2.65 2.21 45.02 0.10 2.75 16 10 H 0.08 1.69 7.58 -2.39 -0.02 1.67 16 11 N -0.71 -14.18 3.60 -442.41 -1.59 -15.77 16 12 C 0.54 16.53 7.81 87.66 0.68 17.21 16 13 O -0.56 -21.45 15.52 -3.03 -0.05 -21.49 16 14 C -0.11 -3.98 6.16 71.23 0.44 -3.54 16 15 S -0.17 -8.30 18.55 -56.49 -1.05 -9.35 16 16 C -0.53 -30.09 10.04 67.95 0.68 -29.41 16 17 H 0.06 3.68 8.03 -2.91 -0.02 3.66 16 18 C 0.04 2.53 5.50 84.86 0.47 3.00 16 19 N -0.92 -55.32 13.97 21.65 0.30 -55.02 16 20 Si 0.92 44.19 27.74 68.60 1.90 46.09 16 21 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.23 -11.18 6.74 99.48 0.67 -10.51 16 24 C -0.10 -1.34 2.67 -10.73 -0.03 -1.37 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 C -0.15 -2.00 9.06 71.98 0.65 -1.35 16 27 C 0.11 1.67 5.41 86.35 0.47 2.14 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 32 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.12 0.80 7.69 -2.39 -0.02 0.79 16 34 H 0.11 0.87 7.94 -2.38 -0.02 0.85 16 35 H 0.07 0.96 7.74 -2.38 -0.02 0.94 16 36 H 0.11 0.84 5.93 -2.39 -0.01 0.83 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.41 6.44 6.73 -92.71 -0.62 5.81 16 40 H 0.11 3.56 8.14 -2.39 -0.02 3.55 16 41 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 42 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 43 H 0.06 0.85 7.53 -2.39 -0.02 0.83 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.08 1.54 7.01 -2.39 -0.02 1.52 16 47 H 0.08 1.00 6.65 -2.39 -0.02 0.98 16 Total: -1.00 -75.07 385.06 3.17 -71.90 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.29 Total: 14.68 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 5.83 Total: -4.14 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -3.72 Total: -82.26 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -0.09 Total: -36.92 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.90 Total: 46.09 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.05 Total: -9.35 kcal Total: -75.07 3.17 -71.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.883 kcal (2) G-P(sol) polarization free energy of solvation -75.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds