Wall clock time and date at job start Tue Mar 31 2020 15:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47219 * 2 1 4 4 C 1.50700 * 109.47164 * 179.97438 * 3 2 1 5 5 O 1.21290 * 120.00200 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00106 * 179.97438 * 4 3 2 7 7 C 1.46923 * 120.62814 * 0.02562 * 6 4 3 8 8 C 1.53169 * 108.76834 * 233.58409 * 7 6 4 9 9 C 1.53042 * 109.32736 * 305.36050 * 8 7 6 10 10 H 1.08998 * 109.46084 * 181.38211 * 9 8 7 11 11 N 1.46504 * 109.45750 * 301.35704 * 9 8 7 12 12 C 1.34775 * 119.99561 * 275.02560 * 11 9 8 13 13 O 1.21282 * 120.00577 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99768 * 179.97438 * 12 11 9 15 15 S 1.81002 * 109.47349 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00182 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99976 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31630 * 119.99849 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00065 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46755 * 90.00066 * 20 18 16 22 22 H 1.48495 * 109.46931 * 210.00080 * 20 18 16 23 23 H 1.48500 * 109.46738 * 330.00322 * 20 18 16 24 24 C 1.53040 * 109.53030 * 61.36794 * 9 8 7 25 25 H 1.09001 * 109.49686 * 58.59289 * 24 9 8 26 26 C 1.53002 * 109.49991 * 178.69197 * 24 9 8 27 27 C 1.46929 * 120.62972 * 179.97438 * 6 4 3 28 28 H 1.08994 * 109.47058 * 60.00143 * 1 2 3 29 29 H 1.09003 * 109.46807 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47134 * 300.00150 * 1 2 3 31 31 H 1.09007 * 109.47272 * 240.00069 * 2 1 3 32 32 H 1.09001 * 109.46989 * 120.00248 * 2 1 3 33 33 H 1.09001 * 109.47238 * 60.00218 * 3 2 1 34 34 H 1.09001 * 109.47343 * 300.00031 * 3 2 1 35 35 H 1.08994 * 109.59005 * 353.37592 * 7 6 4 36 36 H 1.09007 * 109.58471 * 113.79932 * 7 6 4 37 37 H 1.08995 * 109.48045 * 185.41068 * 8 7 6 38 38 H 1.08997 * 109.49674 * 65.31534 * 8 7 6 39 39 H 0.96993 * 120.00065 * 95.02818 * 11 9 8 40 40 H 1.09005 * 109.46867 * 60.00428 * 14 12 11 41 41 H 1.09000 * 109.47235 * 300.00468 * 14 12 11 42 42 H 0.97005 * 119.99878 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46829 * 59.99711 * 26 24 9 44 44 H 1.08992 * 109.46792 * 180.02562 * 26 24 9 45 45 H 1.09001 * 109.46693 * 300.00087 * 26 24 9 46 46 H 1.09003 * 109.58725 * 6.63426 * 27 6 4 47 47 H 1.09000 * 109.59054 * 246.20004 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1535 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5003 3.8900 -0.0003 8 6 4.0089 4.7413 -1.1676 9 6 5.5303 4.8765 -1.0708 10 1 5.8919 5.5023 -1.8867 11 7 5.8850 5.4918 0.2106 12 6 5.8865 6.8337 0.3361 13 8 5.5939 7.5319 -0.6115 14 6 6.2508 7.4668 1.6543 15 16 6.1601 9.2683 1.5041 16 6 6.6211 9.7353 3.1393 17 1 6.8535 8.9769 3.8722 18 6 6.6865 11.0779 3.4852 19 7 6.4037 12.0023 2.5918 20 14 7.1746 11.5731 5.2190 21 1 8.6486 11.7388 5.2900 22 1 6.5147 12.8557 5.5717 23 1 6.7485 10.5182 6.1734 24 6 6.1742 3.4914 -1.1667 25 1 5.8905 3.0229 -2.1091 26 6 7.6965 3.6304 -1.1026 27 6 5.6901 2.6257 0.0014 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.4322 3.7082 -0.1187 36 1 3.6822 4.4121 0.9392 37 1 3.5523 5.7299 -1.1226 38 1 3.7457 4.2609 -2.1099 39 1 6.1187 4.9336 0.9685 40 1 7.2645 7.1754 1.9295 41 1 5.5549 7.1311 2.4232 42 1 6.4491 12.9406 2.8336 43 1 7.9792 4.0977 -0.1593 44 1 8.1545 2.6437 -1.1714 45 1 8.0401 4.2488 -1.9318 46 1 6.0668 1.6096 -0.1161 47 1 6.0503 3.0449 0.9409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073745473.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:16 Heat of formation + Delta-G solvation = -93.226917 kcal Electronic energy + Delta-G solvation = -26131.170272 eV Core-core repulsion = 22439.311308 eV Total energy + Delta-G solvation = -3691.858964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90555 -39.42560 -37.68484 -34.81977 -34.58285 -32.99058 -32.45512 -31.52797 -28.96103 -28.85314 -26.58903 -25.56761 -25.25390 -22.72244 -22.18709 -20.95619 -20.01259 -18.89702 -17.96889 -17.38150 -16.44736 -16.39776 -16.26837 -15.84723 -15.26863 -14.83103 -14.65789 -14.60328 -14.23380 -14.16737 -13.81261 -13.71786 -13.32424 -13.30713 -12.99890 -12.60814 -12.49375 -12.36875 -12.21455 -12.12131 -11.91471 -11.77293 -11.49016 -11.28708 -11.15888 -11.08735 -11.07939 -11.05166 -10.82435 -10.71257 -10.01069 -9.84132 -9.43593 -9.10239 -9.03798 -8.83169 -8.27150 -6.53153 -6.24589 -3.95206 2.35900 2.66352 2.99760 3.04396 3.20248 3.25995 3.29865 3.67698 4.13414 4.17804 4.36039 4.46798 4.54751 4.56031 4.64774 4.78733 4.88196 4.93688 5.07587 5.10655 5.10903 5.14403 5.17361 5.25951 5.30962 5.38456 5.44706 5.47840 5.52953 5.62509 5.68481 5.73258 5.76947 5.80288 5.83563 5.87427 5.91276 5.96746 6.00169 6.09907 6.23638 6.60087 7.08710 7.56789 7.64988 7.89516 8.32328 8.56724 9.20960 10.82749 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.002458 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.400162 B =11389.008428 C =12039.830044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.515 3.485 5 O -0.545 6.545 6 N -0.613 5.613 7 C 0.107 3.893 8 C -0.147 4.147 9 C 0.152 3.848 10 H 0.093 0.907 11 N -0.732 5.732 12 C 0.534 3.466 13 O -0.516 6.516 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.111 4.111 25 H 0.087 0.913 26 C -0.146 4.146 27 C 0.114 3.886 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.395 0.605 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.268 0.732 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.067 -22.438 -6.248 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.181 4.181 4 C 0.304 3.696 5 O -0.422 6.422 6 N -0.346 5.346 7 C -0.016 4.016 8 C -0.187 4.187 9 C 0.047 3.953 10 H 0.111 0.889 11 N -0.388 5.388 12 C 0.320 3.680 13 O -0.390 6.390 14 C -0.305 4.305 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.131 4.131 25 H 0.105 0.895 26 C -0.203 4.203 27 C -0.009 4.009 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.230 0.770 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.114 0.886 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.261 -21.631 -7.870 24.136 hybrid contribution 0.766 -0.512 2.591 2.750 sum -6.494 -22.142 -5.279 23.671 Atomic orbital electron populations 1.21796 0.95415 1.01983 1.01886 1.21285 0.95316 0.94639 1.03468 1.21765 0.91761 1.00177 1.04396 1.20793 0.90439 0.82999 0.75380 1.90687 1.70485 1.30978 1.50098 1.48189 1.06806 1.06188 1.73435 1.21783 0.96588 0.83453 0.99758 1.22319 0.96682 1.01204 0.98466 1.20850 0.93569 0.93125 0.87789 0.88892 1.46144 1.72260 1.06801 1.13578 1.20296 0.76193 0.81419 0.90095 1.90701 1.46405 1.61575 1.40309 1.23538 1.04252 1.05993 0.96703 1.85385 1.90034 0.90493 1.17340 1.22862 1.53783 0.94782 0.96971 0.90968 1.24992 0.94813 0.95410 0.98369 1.70016 1.45525 1.00840 1.33882 0.86173 0.78711 0.78081 0.82570 1.20264 1.20740 1.19707 1.21783 0.96551 0.95023 0.99729 0.89498 1.21759 0.93574 1.02004 1.03008 1.21664 0.79463 1.01869 0.97900 0.92638 0.92404 0.92609 0.91324 0.91296 0.88831 0.88829 0.89512 0.90725 0.89379 0.90707 0.76988 0.89332 0.89365 0.92173 0.92002 0.92257 0.91845 0.88614 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.11 -0.81 5.22 -26.74 -0.14 -0.95 16 3 C -0.14 -0.99 4.05 -27.89 -0.11 -1.11 16 4 C 0.51 5.20 7.70 -10.98 -0.08 5.11 16 5 O -0.54 -7.40 15.40 5.55 0.09 -7.32 16 6 N -0.61 -5.46 2.97 -172.75 -0.51 -5.97 16 7 C 0.11 0.85 6.08 -3.72 -0.02 0.83 16 8 C -0.15 -1.36 5.77 -26.62 -0.15 -1.52 16 9 C 0.15 1.57 2.21 -67.89 -0.15 1.42 16 10 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 11 N -0.73 -8.63 3.60 -53.76 -0.19 -8.82 16 12 C 0.53 9.09 7.81 -10.98 -0.09 9.00 16 13 O -0.52 -10.82 15.52 5.56 0.09 -10.73 16 14 C -0.15 -2.95 6.16 36.01 0.22 -2.72 16 15 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 16 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.80 13.22 55.49 0.73 -25.06 16 20 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 24 C -0.11 -0.93 2.67 -90.47 -0.24 -1.18 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 26 C -0.15 -1.19 9.05 37.16 0.34 -0.85 16 27 C 0.11 1.00 5.42 -3.68 -0.02 0.98 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.09 0.54 7.94 -51.93 -0.41 0.13 16 34 H 0.09 0.52 7.69 -51.93 -0.40 0.13 16 35 H 0.09 0.53 5.93 -51.93 -0.31 0.22 16 36 H 0.07 0.65 7.74 -51.93 -0.40 0.25 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.40 3.86 6.73 -40.82 -0.27 3.59 16 40 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 41 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.06 0.53 7.54 -51.93 -0.39 0.14 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.10 0.95 7.01 -51.93 -0.36 0.59 16 47 H 0.07 0.54 6.64 -51.93 -0.34 0.20 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -34.47 387.73 -8.98 -43.45 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.90 Total: 0.46 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 0.11 Total: -4.18 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.03 Total: -39.86 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.17 Total: -18.05 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.47 -8.98 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745473.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.778 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds