Wall clock time and date at job start Tue Mar 31 2020 15:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47219 * 2 1 4 4 C 1.50700 * 109.47164 * 179.97438 * 3 2 1 5 5 O 1.21290 * 120.00200 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00106 * 179.97438 * 4 3 2 7 7 C 1.46923 * 120.62814 * 0.02562 * 6 4 3 8 8 C 1.53169 * 108.76834 * 233.58409 * 7 6 4 9 9 C 1.53042 * 109.32736 * 305.36050 * 8 7 6 10 10 H 1.08998 * 109.46084 * 181.38211 * 9 8 7 11 11 N 1.46504 * 109.45750 * 301.35704 * 9 8 7 12 12 C 1.34775 * 119.99561 * 275.02560 * 11 9 8 13 13 O 1.21282 * 120.00577 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99768 * 179.97438 * 12 11 9 15 15 S 1.81002 * 109.47349 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00182 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99976 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31630 * 119.99849 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00065 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46755 * 90.00066 * 20 18 16 22 22 H 1.48495 * 109.46931 * 210.00080 * 20 18 16 23 23 H 1.48500 * 109.46738 * 330.00322 * 20 18 16 24 24 C 1.53040 * 109.53030 * 61.36794 * 9 8 7 25 25 H 1.09001 * 109.49686 * 58.59289 * 24 9 8 26 26 C 1.53002 * 109.49991 * 178.69197 * 24 9 8 27 27 C 1.46929 * 120.62972 * 179.97438 * 6 4 3 28 28 H 1.08994 * 109.47058 * 60.00143 * 1 2 3 29 29 H 1.09003 * 109.46807 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47134 * 300.00150 * 1 2 3 31 31 H 1.09007 * 109.47272 * 240.00069 * 2 1 3 32 32 H 1.09001 * 109.46989 * 120.00248 * 2 1 3 33 33 H 1.09001 * 109.47238 * 60.00218 * 3 2 1 34 34 H 1.09001 * 109.47343 * 300.00031 * 3 2 1 35 35 H 1.08994 * 109.59005 * 353.37592 * 7 6 4 36 36 H 1.09007 * 109.58471 * 113.79932 * 7 6 4 37 37 H 1.08995 * 109.48045 * 185.41068 * 8 7 6 38 38 H 1.08997 * 109.49674 * 65.31534 * 8 7 6 39 39 H 0.96993 * 120.00065 * 95.02818 * 11 9 8 40 40 H 1.09005 * 109.46867 * 60.00428 * 14 12 11 41 41 H 1.09000 * 109.47235 * 300.00468 * 14 12 11 42 42 H 0.97005 * 119.99878 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46829 * 59.99711 * 26 24 9 44 44 H 1.08992 * 109.46792 * 180.02562 * 26 24 9 45 45 H 1.09001 * 109.46693 * 300.00087 * 26 24 9 46 46 H 1.09003 * 109.58725 * 6.63426 * 27 6 4 47 47 H 1.09000 * 109.59054 * 246.20004 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1535 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5003 3.8900 -0.0003 8 6 4.0089 4.7413 -1.1676 9 6 5.5303 4.8765 -1.0708 10 1 5.8919 5.5023 -1.8867 11 7 5.8850 5.4918 0.2106 12 6 5.8865 6.8337 0.3361 13 8 5.5939 7.5319 -0.6115 14 6 6.2508 7.4668 1.6543 15 16 6.1601 9.2683 1.5041 16 6 6.6211 9.7353 3.1393 17 1 6.8535 8.9769 3.8722 18 6 6.6865 11.0779 3.4852 19 7 6.4037 12.0023 2.5918 20 14 7.1746 11.5731 5.2190 21 1 8.6486 11.7388 5.2900 22 1 6.5147 12.8557 5.5717 23 1 6.7485 10.5182 6.1734 24 6 6.1742 3.4914 -1.1667 25 1 5.8905 3.0229 -2.1091 26 6 7.6965 3.6304 -1.1026 27 6 5.6901 2.6257 0.0014 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.4322 3.7082 -0.1187 36 1 3.6822 4.4121 0.9392 37 1 3.5523 5.7299 -1.1226 38 1 3.7457 4.2609 -2.1099 39 1 6.1187 4.9336 0.9685 40 1 7.2645 7.1754 1.9295 41 1 5.5549 7.1311 2.4232 42 1 6.4491 12.9406 2.8336 43 1 7.9792 4.0977 -0.1593 44 1 8.1545 2.6437 -1.1714 45 1 8.0401 4.2488 -1.9318 46 1 6.0668 1.6096 -0.1161 47 1 6.0503 3.0449 0.9409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073745473.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:15 Heat of formation + Delta-G solvation = -115.121021 kcal Electronic energy + Delta-G solvation = -26132.119672 eV Core-core repulsion = 22439.311308 eV Total energy + Delta-G solvation = -3692.808364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77241 -40.51553 -38.73766 -35.61014 -35.30957 -34.57410 -33.90639 -32.53367 -30.31976 -29.45654 -27.68810 -27.26488 -26.07560 -23.54045 -22.76928 -22.09184 -20.86848 -19.88270 -19.70056 -18.25586 -17.77658 -17.25528 -17.01620 -16.86980 -16.77144 -16.42852 -15.89400 -15.45019 -15.35669 -15.11480 -14.80615 -14.69105 -14.45076 -14.37387 -13.94136 -13.76741 -13.53888 -13.15711 -13.11720 -12.93740 -12.89092 -12.84304 -12.70105 -12.59683 -12.49454 -12.12381 -12.00268 -11.88667 -11.74138 -11.62599 -11.53538 -11.13549 -10.88715 -10.80690 -10.25355 -10.10920 -9.66221 -8.64103 -8.33920 -6.10872 1.28447 1.42463 1.48059 1.58113 1.60731 1.66258 1.95698 2.26525 2.32385 3.00320 3.33296 3.43496 3.63658 3.73970 3.82227 3.97661 3.99628 4.02985 4.11864 4.20038 4.29109 4.32815 4.42288 4.53889 4.53982 4.61721 4.69141 4.69586 4.73750 4.78734 4.83134 4.88707 4.96561 5.05542 5.08511 5.10911 5.23850 5.28038 5.29459 5.42970 5.44944 5.52265 5.53935 6.20666 6.35501 6.51100 7.07881 7.14527 7.27762 8.74999 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.002458 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.400162 B =11389.008428 C =12039.830044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.137 4.137 4 C 0.510 3.490 5 O -0.586 6.586 6 N -0.609 5.609 7 C 0.110 3.890 8 C -0.143 4.143 9 C 0.151 3.849 10 H 0.073 0.927 11 N -0.705 5.705 12 C 0.540 3.460 13 O -0.560 6.560 14 C -0.131 4.131 15 S -0.147 6.147 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 0.996 3.004 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.258 1.258 24 C -0.097 4.097 25 H 0.093 0.907 26 C -0.145 4.145 27 C 0.113 3.887 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.409 0.591 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.271 0.729 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 -23.890 -4.960 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.177 4.177 4 C 0.301 3.699 5 O -0.466 6.466 6 N -0.341 5.341 7 C -0.013 4.013 8 C -0.182 4.182 9 C 0.046 3.954 10 H 0.091 0.909 11 N -0.360 5.360 12 C 0.326 3.674 13 O -0.438 6.438 14 C -0.283 4.283 15 S 0.081 5.919 16 C -0.694 4.694 17 H 0.099 0.901 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.818 3.182 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.182 1.182 24 C -0.116 4.116 25 H 0.111 0.889 26 C -0.203 4.203 27 C -0.010 4.010 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.247 0.753 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.105 0.895 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.781 -23.125 -6.574 25.269 hybrid contribution 0.939 -0.187 2.116 2.322 sum -6.843 -23.312 -4.458 24.701 Atomic orbital electron populations 1.21764 0.93864 1.02352 1.02659 1.21248 0.96578 0.94764 1.02024 1.21824 0.89423 1.00243 1.06185 1.21350 0.91656 0.82496 0.74423 1.90674 1.71497 1.32391 1.52047 1.48233 1.06845 1.06312 1.72742 1.21841 0.97931 0.82600 0.98881 1.22254 0.95277 1.00691 0.99978 1.20979 0.94849 0.93571 0.86018 0.90884 1.45860 1.70363 1.04988 1.14792 1.19930 0.76054 0.82757 0.88680 1.90697 1.48789 1.62947 1.41332 1.23384 1.05938 1.00275 0.98665 1.85539 1.90407 0.97755 1.18242 1.23200 1.53539 0.95438 0.97179 0.90053 1.26093 0.94560 0.95380 1.03085 1.70177 1.46877 1.01255 1.36381 0.84989 0.78501 0.77916 0.76805 1.19445 1.20343 1.18238 1.21665 0.96560 0.93413 1.00007 0.88910 1.21756 0.93326 1.02620 1.02577 1.21670 0.79684 1.01377 0.98287 0.91745 0.92345 0.91876 0.92749 0.92883 0.86997 0.86764 0.86973 0.90962 0.91220 0.89184 0.75325 0.87627 0.87360 0.92036 0.92268 0.91013 0.92474 0.89546 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.67 16 2 C -0.11 -1.46 5.22 30.59 0.16 -1.30 16 3 C -0.14 -1.58 4.05 29.85 0.12 -1.46 16 4 C 0.51 9.39 7.70 87.66 0.67 10.06 16 5 O -0.59 -15.52 15.40 -3.06 -0.05 -15.57 16 6 N -0.61 -9.47 2.97 -818.84 -2.43 -11.90 16 7 C 0.11 1.46 6.08 86.36 0.53 1.98 16 8 C -0.14 -2.38 5.77 30.66 0.18 -2.21 16 9 C 0.15 2.92 2.21 45.02 0.10 3.02 16 10 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 11 N -0.71 -15.51 3.60 -442.39 -1.59 -17.10 16 12 C 0.54 18.04 7.81 87.66 0.68 18.72 16 13 O -0.56 -23.85 15.52 -3.04 -0.05 -23.90 16 14 C -0.13 -4.89 6.16 71.24 0.44 -4.45 16 15 S -0.15 -7.87 20.57 -56.49 -1.16 -9.03 16 16 C -0.55 -30.49 9.50 67.96 0.65 -29.84 16 17 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 18 C 0.01 0.76 5.49 84.86 0.47 1.23 16 19 N -0.91 -55.11 13.22 21.65 0.29 -54.83 16 20 Si 1.00 42.95 29.55 68.60 2.03 44.98 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 C -0.10 -1.46 2.67 -10.70 -0.03 -1.49 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 C -0.14 -2.14 9.05 71.98 0.65 -1.49 16 27 C 0.11 1.75 5.42 86.38 0.47 2.22 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.88 8.10 -2.38 -0.02 0.86 16 32 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 33 H 0.11 0.92 7.94 -2.39 -0.02 0.90 16 34 H 0.11 0.88 7.69 -2.39 -0.02 0.86 16 35 H 0.11 0.96 5.93 -2.39 -0.01 0.95 16 36 H 0.07 1.04 7.74 -2.38 -0.02 1.02 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.41 6.95 6.73 -92.71 -0.62 6.33 16 40 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 41 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16 42 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 43 H 0.06 0.90 7.54 -2.39 -0.02 0.89 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.09 1.60 7.01 -2.39 -0.02 1.58 16 47 H 0.08 1.04 6.64 -2.39 -0.02 1.02 16 Total: -1.00 -77.25 387.73 3.16 -74.09 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.33 Total: 18.93 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 5.80 Total: -5.67 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -3.74 Total: -83.83 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.09 Total: -39.47 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -77.25 3.16 -74.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745473.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.029 kcal (2) G-P(sol) polarization free energy of solvation -77.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds