Wall clock time and date at job start Tue Mar 31 2020 15:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47190 * 2 1 4 4 C 1.50703 * 109.46937 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00142 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99585 * 179.97438 * 4 3 2 7 7 C 1.46929 * 120.63482 * 0.02562 * 6 4 3 8 8 C 1.53196 * 108.77486 * 233.58690 * 7 6 4 9 9 C 1.53035 * 109.30995 * 305.36045 * 8 7 6 10 10 H 1.08999 * 109.46561 * 301.34510 * 9 8 7 11 11 N 1.46502 * 109.45538 * 181.37364 * 9 8 7 12 12 C 1.34772 * 120.00417 * 85.00380 * 11 9 8 13 13 O 1.21287 * 119.99801 * 359.97438 * 12 11 9 14 14 C 1.50703 * 120.00856 * 179.97438 * 12 11 9 15 15 S 1.80994 * 109.47625 * 179.97438 * 14 12 11 16 16 C 1.76192 * 100.00065 * 180.02562 * 15 14 12 17 17 H 1.08006 * 120.00083 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00251 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99513 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00178 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47163 * 59.99464 * 20 18 16 22 22 H 1.48495 * 109.47082 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47251 * 299.99754 * 20 18 16 24 24 C 1.53042 * 109.54021 * 61.36728 * 9 8 7 25 25 H 1.09004 * 109.49547 * 58.61806 * 24 9 8 26 26 C 1.52994 * 109.49646 * 178.67720 * 24 9 8 27 27 C 1.46924 * 120.63108 * 179.97438 * 6 4 3 28 28 H 1.09005 * 109.46962 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47158 * 299.99949 * 1 2 3 30 30 H 1.08995 * 109.47512 * 60.00117 * 1 2 3 31 31 H 1.08993 * 109.47066 * 239.99566 * 2 1 3 32 32 H 1.09003 * 109.47189 * 119.99943 * 2 1 3 33 33 H 1.08998 * 109.47029 * 59.99971 * 3 2 1 34 34 H 1.08995 * 109.46798 * 300.00321 * 3 2 1 35 35 H 1.08998 * 109.59209 * 113.79505 * 7 6 4 36 36 H 1.09003 * 109.58217 * 353.36786 * 7 6 4 37 37 H 1.09001 * 109.49651 * 65.31212 * 8 7 6 38 38 H 1.08996 * 109.49316 * 185.37450 * 8 7 6 39 39 H 0.97003 * 119.99757 * 264.99642 * 11 9 8 40 40 H 1.09001 * 109.46679 * 300.00629 * 14 12 11 41 41 H 1.09001 * 109.46290 * 59.99303 * 14 12 11 42 42 H 0.97006 * 119.99892 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.47178 * 60.00867 * 26 24 9 44 44 H 1.09004 * 109.46673 * 179.97438 * 26 24 9 45 45 H 1.08992 * 109.48072 * 299.99991 * 26 24 9 46 46 H 1.08999 * 109.58511 * 6.62681 * 27 6 4 47 47 H 1.09005 * 109.70744 * 246.27226 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5003 3.8901 -0.0003 8 6 4.0089 4.7416 -1.1678 9 6 5.5302 4.8766 -1.0707 10 1 5.7941 5.3344 -0.1174 11 7 6.0165 5.7176 -2.1673 12 6 6.0186 7.0590 -2.0379 13 8 5.6175 7.5701 -1.0137 14 6 6.5193 7.9242 -3.1657 15 16 6.3948 9.6663 -2.6909 16 6 7.0268 10.4269 -4.1492 17 1 7.3454 9.8170 -4.9817 18 6 7.1162 11.8098 -4.2278 19 7 6.7284 12.5530 -3.2130 20 14 7.7855 12.6161 -5.7741 21 1 6.9352 12.2450 -6.9336 22 1 7.7769 14.0915 -5.6065 23 1 9.1762 12.1526 -6.0118 24 6 6.1741 3.4915 -1.1666 25 1 5.8910 3.0232 -2.1093 26 6 7.6964 3.6305 -1.1026 27 6 5.6900 2.6259 0.0014 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.6821 4.4122 0.9391 36 1 2.4322 3.7082 -0.1189 37 1 3.7457 4.2612 -2.1102 38 1 3.5519 5.7301 -1.1233 39 1 6.3370 5.3088 -2.9866 40 1 7.5599 7.6784 -3.3777 41 1 5.9155 7.7464 -4.0556 42 1 6.7906 13.5195 -3.2680 43 1 7.9792 4.0978 -0.1593 44 1 8.1545 2.6438 -1.1705 45 1 8.0401 4.2488 -1.9317 46 1 6.0667 1.6098 -0.1160 47 1 6.0523 3.0436 0.9408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073745474.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:23 Heat of formation + Delta-G solvation = -95.924521 kcal Electronic energy + Delta-G solvation = -25718.267608 eV Core-core repulsion = 22026.291667 eV Total energy + Delta-G solvation = -3691.975941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76620 -39.43285 -37.72001 -34.90590 -34.74879 -33.03447 -32.45196 -31.48563 -29.09698 -28.77853 -26.63124 -25.55107 -24.83952 -22.73615 -22.19633 -20.66871 -20.33417 -19.26917 -17.86946 -17.44277 -16.46430 -16.31629 -16.23798 -16.05028 -15.12913 -14.82616 -14.77694 -14.59032 -14.21643 -14.17619 -13.85757 -13.44638 -13.34898 -13.25722 -12.97661 -12.63772 -12.48826 -12.40507 -12.23704 -12.15861 -12.05528 -11.70833 -11.51244 -11.33925 -11.16737 -11.10364 -11.06854 -11.05567 -10.81068 -10.67575 -10.04384 -9.84732 -9.47577 -9.08745 -8.99019 -8.89979 -8.27199 -6.52759 -6.23991 -3.94712 2.33504 2.64377 2.99514 3.04367 3.21684 3.25784 3.28982 3.66549 4.12268 4.18375 4.33342 4.45537 4.53081 4.58273 4.62970 4.80125 4.90198 4.96832 5.04882 5.10263 5.11203 5.12296 5.17974 5.24518 5.32205 5.38316 5.41146 5.45061 5.50345 5.60925 5.63425 5.67876 5.76383 5.78579 5.83274 5.85457 5.94920 5.95865 6.07445 6.10963 6.22070 6.59540 7.06556 7.56925 7.66749 7.87429 8.32584 8.56975 9.21328 10.83327 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025508 B = 0.002110 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.416413 B =13270.074461 C =13800.787423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.515 3.485 5 O -0.545 6.545 6 N -0.614 5.614 7 C 0.109 3.891 8 C -0.147 4.147 9 C 0.153 3.847 10 H 0.090 0.910 11 N -0.733 5.733 12 C 0.534 3.466 13 O -0.517 6.517 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.111 4.111 25 H 0.078 0.922 26 C -0.146 4.146 27 C 0.119 3.881 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 -23.546 5.208 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.181 4.181 4 C 0.304 3.696 5 O -0.422 6.422 6 N -0.348 5.348 7 C -0.014 4.014 8 C -0.187 4.187 9 C 0.047 3.953 10 H 0.108 0.892 11 N -0.387 5.387 12 C 0.320 3.680 13 O -0.391 6.391 14 C -0.305 4.305 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.131 4.131 25 H 0.097 0.903 26 C -0.204 4.204 27 C -0.004 4.004 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.231 0.769 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.114 0.886 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.081 -23.050 7.007 25.411 hybrid contribution 1.041 -0.022 -2.671 2.867 sum -7.040 -23.072 4.336 24.509 Atomic orbital electron populations 1.21798 0.95405 1.01996 1.01880 1.21287 0.95322 0.94632 1.03486 1.21770 0.91746 1.00207 1.04404 1.20793 0.90447 0.83000 0.75368 1.90686 1.70492 1.30970 1.50050 1.48217 1.06933 1.06194 1.73449 1.21793 0.96804 0.83432 0.99393 1.22357 0.96629 1.01162 0.98537 1.20868 0.92461 0.89697 0.92249 0.89162 1.46067 1.67470 1.06121 1.19002 1.20307 0.77293 0.81704 0.88692 1.90697 1.45567 1.73044 1.29806 1.23539 1.03756 1.03691 0.99502 1.85369 1.84209 0.89776 1.23900 1.22827 1.49306 0.94181 1.02179 0.91002 1.24989 0.95068 0.96199 0.97305 1.70004 1.44367 1.05759 1.30140 0.86226 0.79384 0.78047 0.81860 1.19945 1.20797 1.19940 1.21778 0.96572 0.95039 0.99731 0.90315 1.21762 0.93580 1.02009 1.03005 1.21635 0.79226 1.01665 0.97863 0.92398 0.92634 0.92612 0.91301 0.91299 0.88824 0.88791 0.90588 0.89263 0.91288 0.89404 0.76871 0.89289 0.89300 0.92116 0.92104 0.92243 0.91731 0.88577 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.11 -0.78 5.22 -26.73 -0.14 -0.92 16 3 C -0.14 -0.95 4.05 -27.88 -0.11 -1.06 16 4 C 0.52 5.09 7.70 -10.99 -0.08 5.00 16 5 O -0.54 -7.30 15.40 5.56 0.09 -7.21 16 6 N -0.61 -5.41 2.97 -172.74 -0.51 -5.92 16 7 C 0.11 0.82 6.34 -3.71 -0.02 0.80 16 8 C -0.15 -1.39 5.65 -26.61 -0.15 -1.54 16 9 C 0.15 1.61 1.88 -67.89 -0.13 1.48 16 10 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 11 N -0.73 -8.92 4.36 -53.77 -0.23 -9.15 16 12 C 0.53 9.28 7.81 -10.99 -0.09 9.20 16 13 O -0.52 -10.96 15.52 5.55 0.09 -10.87 16 14 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 15 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 16 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 17 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 20 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.11 -0.95 2.46 -90.48 -0.22 -1.17 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 26 C -0.15 -1.20 9.03 37.15 0.34 -0.87 16 27 C 0.12 1.05 5.72 -3.69 -0.02 1.03 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.09 0.49 7.94 -51.93 -0.41 0.07 16 34 H 0.09 0.51 7.69 -51.93 -0.40 0.11 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.49 5.93 -51.93 -0.31 0.19 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.40 3.88 8.31 -40.82 -0.34 3.54 16 40 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 41 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.56 7.36 -51.93 -0.38 0.17 16 46 H 0.10 0.95 7.00 -51.93 -0.36 0.58 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -34.83 391.67 -9.08 -43.91 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.06 Total: 0.17 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 0.16 Total: -4.07 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -0.01 Total: -40.20 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.09 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.83 -9.08 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745474.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.017 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds