Wall clock time and date at job start Tue Mar 31 2020 15:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47190 * 2 1 4 4 C 1.50703 * 109.46937 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00142 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99585 * 179.97438 * 4 3 2 7 7 C 1.46929 * 120.63482 * 0.02562 * 6 4 3 8 8 C 1.53196 * 108.77486 * 233.58690 * 7 6 4 9 9 C 1.53035 * 109.30995 * 305.36045 * 8 7 6 10 10 H 1.08999 * 109.46561 * 301.34510 * 9 8 7 11 11 N 1.46502 * 109.45538 * 181.37364 * 9 8 7 12 12 C 1.34772 * 120.00417 * 85.00380 * 11 9 8 13 13 O 1.21287 * 119.99801 * 359.97438 * 12 11 9 14 14 C 1.50703 * 120.00856 * 179.97438 * 12 11 9 15 15 S 1.80994 * 109.47625 * 179.97438 * 14 12 11 16 16 C 1.76192 * 100.00065 * 180.02562 * 15 14 12 17 17 H 1.08006 * 120.00083 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00251 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99513 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00178 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47163 * 59.99464 * 20 18 16 22 22 H 1.48495 * 109.47082 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47251 * 299.99754 * 20 18 16 24 24 C 1.53042 * 109.54021 * 61.36728 * 9 8 7 25 25 H 1.09004 * 109.49547 * 58.61806 * 24 9 8 26 26 C 1.52994 * 109.49646 * 178.67720 * 24 9 8 27 27 C 1.46924 * 120.63108 * 179.97438 * 6 4 3 28 28 H 1.09005 * 109.46962 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47158 * 299.99949 * 1 2 3 30 30 H 1.08995 * 109.47512 * 60.00117 * 1 2 3 31 31 H 1.08993 * 109.47066 * 239.99566 * 2 1 3 32 32 H 1.09003 * 109.47189 * 119.99943 * 2 1 3 33 33 H 1.08998 * 109.47029 * 59.99971 * 3 2 1 34 34 H 1.08995 * 109.46798 * 300.00321 * 3 2 1 35 35 H 1.08998 * 109.59209 * 113.79505 * 7 6 4 36 36 H 1.09003 * 109.58217 * 353.36786 * 7 6 4 37 37 H 1.09001 * 109.49651 * 65.31212 * 8 7 6 38 38 H 1.08996 * 109.49316 * 185.37450 * 8 7 6 39 39 H 0.97003 * 119.99757 * 264.99642 * 11 9 8 40 40 H 1.09001 * 109.46679 * 300.00629 * 14 12 11 41 41 H 1.09001 * 109.46290 * 59.99303 * 14 12 11 42 42 H 0.97006 * 119.99892 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.47178 * 60.00867 * 26 24 9 44 44 H 1.09004 * 109.46673 * 179.97438 * 26 24 9 45 45 H 1.08992 * 109.48072 * 299.99991 * 26 24 9 46 46 H 1.08999 * 109.58511 * 6.62681 * 27 6 4 47 47 H 1.09005 * 109.70744 * 246.27226 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5003 3.8901 -0.0003 8 6 4.0089 4.7416 -1.1678 9 6 5.5302 4.8766 -1.0707 10 1 5.7941 5.3344 -0.1174 11 7 6.0165 5.7176 -2.1673 12 6 6.0186 7.0590 -2.0379 13 8 5.6175 7.5701 -1.0137 14 6 6.5193 7.9242 -3.1657 15 16 6.3948 9.6663 -2.6909 16 6 7.0268 10.4269 -4.1492 17 1 7.3454 9.8170 -4.9817 18 6 7.1162 11.8098 -4.2278 19 7 6.7284 12.5530 -3.2130 20 14 7.7855 12.6161 -5.7741 21 1 6.9352 12.2450 -6.9336 22 1 7.7769 14.0915 -5.6065 23 1 9.1762 12.1526 -6.0118 24 6 6.1741 3.4915 -1.1666 25 1 5.8910 3.0232 -2.1093 26 6 7.6964 3.6305 -1.1026 27 6 5.6900 2.6259 0.0014 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.6821 4.4122 0.9391 36 1 2.4322 3.7082 -0.1189 37 1 3.7457 4.2612 -2.1102 38 1 3.5519 5.7301 -1.1233 39 1 6.3370 5.3088 -2.9866 40 1 7.5599 7.6784 -3.3777 41 1 5.9155 7.7464 -4.0556 42 1 6.7906 13.5195 -3.2680 43 1 7.9792 4.0978 -0.1593 44 1 8.1545 2.6438 -1.1705 45 1 8.0401 4.2488 -1.9317 46 1 6.0667 1.6098 -0.1160 47 1 6.0523 3.0436 0.9408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073745474.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:21 Heat of formation + Delta-G solvation = -118.563238 kcal Electronic energy + Delta-G solvation = -25719.249297 eV Core-core repulsion = 22026.291667 eV Total energy + Delta-G solvation = -3692.957630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.60394 -40.57813 -38.72139 -35.85096 -35.35861 -34.57835 -33.91688 -32.49341 -30.41418 -29.41673 -27.69114 -27.29095 -25.71470 -23.52474 -22.76692 -21.66573 -21.43662 -20.06456 -19.70371 -18.25006 -17.79708 -17.29034 -16.98334 -16.90711 -16.86914 -16.36961 -15.92282 -15.46381 -15.40434 -14.99796 -14.78880 -14.69147 -14.44411 -14.10461 -14.06574 -13.73991 -13.46169 -13.20275 -13.16016 -13.00356 -12.86941 -12.86727 -12.77897 -12.62024 -12.42817 -12.17827 -12.01427 -11.91519 -11.75373 -11.62138 -11.49936 -11.12414 -10.93582 -10.81684 -10.26792 -10.07203 -9.73010 -8.64908 -8.34028 -6.11410 1.27694 1.43872 1.47152 1.56086 1.60824 1.64530 1.95084 2.26176 2.31070 3.00028 3.32484 3.43122 3.60863 3.75146 3.84151 3.96616 3.99456 4.06065 4.11988 4.22725 4.30166 4.32037 4.42332 4.53164 4.54023 4.63119 4.66087 4.69734 4.70381 4.76063 4.80452 4.86438 4.93108 5.03944 5.05785 5.19568 5.24311 5.28358 5.30355 5.42270 5.44528 5.49890 5.53158 6.20100 6.35391 6.52435 7.07431 7.13648 7.27071 8.74703 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025508 B = 0.002110 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.416413 B =13270.074461 C =13800.787423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.137 4.137 4 C 0.510 3.490 5 O -0.586 6.586 6 N -0.612 5.612 7 C 0.112 3.888 8 C -0.142 4.142 9 C 0.151 3.849 10 H 0.070 0.930 11 N -0.708 5.708 12 C 0.538 3.462 13 O -0.560 6.560 14 C -0.131 4.131 15 S -0.147 6.147 16 C -0.548 4.548 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 0.996 3.004 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.097 4.097 25 H 0.086 0.914 26 C -0.145 4.145 27 C 0.118 3.882 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.413 0.587 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.271 0.729 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.119 -24.701 3.662 26.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.177 4.177 4 C 0.301 3.699 5 O -0.466 6.466 6 N -0.344 5.344 7 C -0.010 4.010 8 C -0.182 4.182 9 C 0.046 3.954 10 H 0.089 0.911 11 N -0.361 5.361 12 C 0.324 3.676 13 O -0.438 6.438 14 C -0.283 4.283 15 S 0.080 5.920 16 C -0.696 4.696 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.818 3.182 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.117 4.117 25 H 0.105 0.895 26 C -0.203 4.203 27 C -0.005 4.005 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.135 0.865 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.250 0.750 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.493 -24.245 5.442 26.260 hybrid contribution 1.176 0.204 -2.145 2.454 sum -7.317 -24.042 3.297 25.346 Atomic orbital electron populations 1.21765 0.93821 1.02352 1.02689 1.21252 0.96607 0.94771 1.02019 1.21832 0.89256 1.00277 1.06291 1.21379 0.91723 0.82448 0.74373 1.90670 1.71533 1.32402 1.52033 1.48282 1.06905 1.06475 1.72770 1.21869 0.98127 0.82428 0.98617 1.22278 0.95250 1.00652 0.99977 1.21009 0.93709 0.90058 0.90588 0.91144 1.45808 1.65851 1.04359 1.20046 1.19962 0.77106 0.83071 0.87440 1.90690 1.47815 1.74150 1.31175 1.23386 1.05449 0.98654 1.00778 1.85521 1.84662 0.96304 1.25492 1.23177 1.49167 0.94868 1.02361 0.90025 1.26102 0.95165 0.96898 1.00941 1.70169 1.45787 1.06069 1.32628 0.85032 0.79043 0.76809 0.77297 1.18686 1.20428 1.18757 1.21654 0.96607 0.93404 0.99988 0.89534 1.21765 0.93306 1.02687 1.02548 1.21615 0.79629 1.01129 0.98121 0.92376 0.91735 0.91813 0.92859 0.92809 0.86718 0.86792 0.90412 0.86505 0.90215 0.91294 0.74987 0.87499 0.87401 0.92009 0.92820 0.90980 0.91862 0.89428 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.59 16 2 C -0.11 -1.42 5.22 30.60 0.16 -1.26 16 3 C -0.14 -1.52 4.05 29.85 0.12 -1.40 16 4 C 0.51 9.35 7.70 87.66 0.67 10.02 16 5 O -0.59 -15.52 15.40 -3.03 -0.05 -15.57 16 6 N -0.61 -9.71 2.97 -818.82 -2.43 -12.15 16 7 C 0.11 1.45 6.34 86.36 0.55 2.00 16 8 C -0.14 -2.43 5.65 30.67 0.17 -2.26 16 9 C 0.15 2.99 1.88 45.02 0.08 3.08 16 10 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 11 N -0.71 -16.05 4.36 -442.40 -1.93 -17.98 16 12 C 0.54 18.39 7.81 87.66 0.68 19.07 16 13 O -0.56 -24.14 15.52 -3.05 -0.05 -24.19 16 14 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 15 S -0.15 -7.95 20.57 -56.49 -1.16 -9.11 16 16 C -0.55 -30.80 9.50 67.96 0.65 -30.15 16 17 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 18 C 0.01 0.78 5.49 84.86 0.47 1.24 16 19 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 20 Si 1.00 43.02 29.55 68.60 2.03 45.05 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 C -0.10 -1.49 2.46 -10.70 -0.03 -1.51 16 25 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 26 C -0.15 -2.17 9.03 71.98 0.65 -1.52 16 27 C 0.12 1.95 5.72 86.38 0.49 2.45 16 28 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 32 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.11 0.82 7.94 -2.39 -0.02 0.80 16 34 H 0.11 0.84 7.69 -2.39 -0.02 0.82 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.12 0.89 5.93 -2.39 -0.01 0.88 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.41 6.95 8.31 -92.71 -0.77 6.18 16 40 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 41 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 42 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.96 7.36 -2.39 -0.02 0.95 16 46 H 0.09 1.66 7.00 -2.39 -0.02 1.64 16 47 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -78.18 391.67 2.70 -75.48 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.18 Total: 18.80 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 5.83 Total: -5.37 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -4.08 Total: -85.08 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.09 Total: -39.76 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -78.18 2.70 -75.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745474.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.088 kcal (2) G-P(sol) polarization free energy of solvation -78.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds