Wall clock time and date at job start Tue Mar 31 2020 15:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47118 * 2 1 4 4 C 1.50702 * 109.47159 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00262 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99928 * 179.72352 * 4 3 2 7 7 C 1.46923 * 120.63273 * 0.28271 * 6 4 3 8 8 C 1.53188 * 108.78248 * 126.36632 * 7 6 4 9 9 C 1.53041 * 109.31323 * 54.63155 * 8 7 6 10 10 H 1.09004 * 109.45546 * 58.65884 * 9 8 7 11 11 N 1.46500 * 109.46188 * 178.61951 * 9 8 7 12 12 C 1.34773 * 119.99709 * 275.00215 * 11 9 8 13 13 O 1.21282 * 120.00444 * 359.97438 * 12 11 9 14 14 C 1.50703 * 120.00023 * 179.97438 * 12 11 9 15 15 S 1.80997 * 109.47430 * 180.02562 * 14 12 11 16 16 C 1.76200 * 100.00152 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99812 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99970 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48512 * 109.46918 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47288 * 120.00294 * 20 18 16 23 23 H 1.48500 * 109.47578 * 240.00707 * 20 18 16 24 24 C 1.53042 * 109.53960 * 298.64003 * 9 8 7 25 25 H 1.09003 * 109.49533 * 301.37974 * 24 9 8 26 26 C 1.52999 * 109.49733 * 181.31305 * 24 9 8 27 27 C 1.46929 * 120.63092 * 179.97438 * 6 4 3 28 28 H 1.08998 * 109.46965 * 299.99512 * 1 2 3 29 29 H 1.09003 * 109.47184 * 60.00331 * 1 2 3 30 30 H 1.09001 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47131 * 240.00065 * 2 1 3 32 32 H 1.09000 * 109.47504 * 120.00369 * 2 1 3 33 33 H 1.09004 * 109.47066 * 60.00025 * 3 2 1 34 34 H 1.08994 * 109.47405 * 299.99855 * 3 2 1 35 35 H 1.09001 * 109.58890 * 246.15338 * 7 6 4 36 36 H 1.08997 * 109.58518 * 6.57129 * 7 6 4 37 37 H 1.08997 * 109.49933 * 174.58934 * 8 7 6 38 38 H 1.09003 * 109.49114 * 294.65356 * 8 7 6 39 39 H 0.96995 * 120.00065 * 94.99727 * 11 9 8 40 40 H 1.08998 * 109.47312 * 300.00387 * 14 12 11 41 41 H 1.09009 * 109.46680 * 60.00181 * 14 12 11 42 42 H 0.97006 * 120.00135 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46752 * 60.00086 * 26 24 9 44 44 H 1.09000 * 109.46886 * 179.97438 * 26 24 9 45 45 H 1.08990 * 109.47443 * 300.00026 * 26 24 9 46 46 H 1.09003 * 109.58730 * 353.42298 * 27 6 4 47 47 H 1.09003 * 109.58586 * 113.84896 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6097 -0.0049 7 6 3.5003 3.8901 -0.0053 8 6 4.0123 4.7446 1.1584 9 6 5.5334 4.8793 1.0565 10 1 5.7943 5.3348 0.1012 11 7 6.0230 5.7233 2.1493 12 6 6.0246 7.0644 2.0161 13 8 5.6212 7.5726 0.9914 14 6 6.5276 7.9327 3.1405 15 16 6.4019 9.6735 2.6612 16 6 7.0383 10.4381 4.1155 17 1 7.3594 9.8305 4.9486 18 6 7.1281 11.8212 4.1899 19 7 6.7373 12.5616 3.1742 20 14 7.8022 12.6318 5.7319 21 1 8.1686 11.5863 6.7210 22 1 9.0063 13.4290 5.3861 23 1 6.7682 13.5243 6.3145 24 6 6.1776 3.4945 1.1540 25 1 5.8972 3.0285 2.0987 26 6 7.6997 3.6333 1.0849 27 6 5.6900 2.6259 -0.0038 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.6793 4.4098 -0.9466 36 1 2.4325 3.7085 0.1168 37 1 3.5556 5.7332 1.1124 38 1 3.7514 4.2668 2.1028 39 1 6.3458 5.3169 2.9687 40 1 5.9259 7.7574 4.0322 41 1 7.5688 7.6877 3.3508 42 1 6.7997 13.5283 3.2263 43 1 8.0458 4.2538 1.9115 44 1 8.1580 2.6469 1.1548 45 1 7.9796 4.0983 0.1397 46 1 6.0666 1.6104 0.1194 47 1 6.0516 3.0402 -0.9449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073745475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:28 Heat of formation + Delta-G solvation = -96.043628 kcal Electronic energy + Delta-G solvation = -25719.098540 eV Core-core repulsion = 22027.117434 eV Total energy + Delta-G solvation = -3691.981106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77548 -39.43462 -37.73122 -34.90780 -34.74926 -33.05527 -32.45588 -31.48601 -29.09873 -28.77794 -26.63827 -25.55766 -24.84159 -22.73694 -22.20091 -20.67078 -20.33437 -19.26788 -17.87354 -17.44476 -16.46692 -16.31605 -16.24136 -16.05281 -15.13109 -14.83055 -14.77890 -14.59623 -14.22177 -14.17744 -13.85913 -13.44182 -13.35116 -13.25817 -12.97814 -12.64202 -12.49002 -12.40672 -12.23974 -12.15994 -12.05750 -11.71402 -11.51417 -11.33871 -11.16829 -11.10387 -11.09012 -11.04541 -10.80458 -10.67100 -10.04405 -9.83097 -9.47672 -9.10544 -8.99151 -8.90152 -8.26545 -6.52957 -6.24661 -3.95162 2.33514 2.64186 2.99438 3.04268 3.19472 3.26164 3.30549 3.66582 4.12254 4.17744 4.33108 4.45324 4.52945 4.58719 4.62963 4.79951 4.90279 4.96956 5.04807 5.10478 5.10813 5.12330 5.17884 5.24471 5.32291 5.38279 5.41102 5.44955 5.50177 5.60836 5.63260 5.67866 5.76329 5.78550 5.83217 5.85372 5.94850 5.95792 6.07310 6.10867 6.21977 6.59431 7.06547 7.57253 7.66685 7.87392 8.32674 8.56885 9.21041 10.82779 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.002109 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.167091 B =13272.333701 C =13803.668333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.515 3.485 5 O -0.545 6.545 6 N -0.614 5.614 7 C 0.109 3.891 8 C -0.148 4.148 9 C 0.153 3.847 10 H 0.090 0.910 11 N -0.733 5.733 12 C 0.534 3.466 13 O -0.517 6.517 14 C -0.154 4.154 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.112 4.112 25 H 0.078 0.922 26 C -0.145 4.145 27 C 0.119 3.881 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 -23.582 -5.111 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.181 4.181 4 C 0.304 3.696 5 O -0.422 6.422 6 N -0.348 5.348 7 C -0.014 4.014 8 C -0.187 4.187 9 C 0.047 3.953 10 H 0.108 0.892 11 N -0.387 5.387 12 C 0.320 3.680 13 O -0.391 6.391 14 C -0.305 4.305 15 S 0.167 5.833 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.132 4.132 25 H 0.097 0.903 26 C -0.203 4.203 27 C -0.004 4.004 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.231 0.769 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.114 0.886 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.097 -23.099 -6.909 25.434 hybrid contribution 1.044 0.002 2.662 2.860 sum -7.053 -23.097 -4.247 24.521 Atomic orbital electron populations 1.21797 0.95404 1.01998 1.01879 1.21286 0.95323 0.94631 1.03488 1.21770 0.91741 1.00209 1.04405 1.20795 0.90447 0.82998 0.75366 1.90686 1.70487 1.30974 1.50047 1.48220 1.06919 1.06195 1.73453 1.21789 0.96794 0.83423 0.99419 1.22359 0.96624 1.01155 0.98566 1.20868 0.92426 0.89643 0.92335 0.89155 1.46064 1.67326 1.06117 1.19149 1.20305 0.77320 0.81712 0.88657 1.90696 1.45536 1.73186 1.29688 1.23539 1.03753 1.03641 0.99547 1.85378 1.84025 0.89811 1.24127 1.22908 1.48944 0.94183 1.02314 0.90893 1.24993 0.95092 0.96233 0.97292 1.70024 1.44478 1.05727 1.30039 0.86117 0.78617 0.79145 0.81618 1.19624 1.20557 1.20557 1.21690 0.96600 0.95044 0.99827 0.90342 1.21760 0.93542 1.02017 1.03011 1.21536 0.79244 1.01639 0.97961 0.92612 0.92632 0.92398 0.91298 0.91299 0.88802 0.88810 0.90577 0.89264 0.89400 0.91288 0.76868 0.89295 0.89284 0.92225 0.91728 0.92237 0.92091 0.88569 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.15 0.37 -0.46 16 2 C -0.11 -0.78 5.22 -26.74 -0.14 -0.92 16 3 C -0.14 -0.95 4.05 -27.88 -0.11 -1.06 16 4 C 0.52 5.09 7.70 -10.98 -0.08 5.00 16 5 O -0.54 -7.30 15.40 5.55 0.09 -7.22 16 6 N -0.61 -5.41 2.98 -173.05 -0.52 -5.92 16 7 C 0.11 0.82 6.34 -3.71 -0.02 0.80 16 8 C -0.15 -1.39 5.65 -26.61 -0.15 -1.54 16 9 C 0.15 1.61 1.88 -67.89 -0.13 1.48 16 10 H 0.09 1.14 7.57 -51.93 -0.39 0.74 16 11 N -0.73 -8.91 4.36 -53.76 -0.23 -9.15 16 12 C 0.53 9.28 7.81 -10.99 -0.09 9.20 16 13 O -0.52 -10.96 15.52 5.56 0.09 -10.87 16 14 C -0.15 -2.99 6.16 36.01 0.22 -2.76 16 15 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 16 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 20 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.11 -0.95 2.44 -90.74 -0.22 -1.18 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 C -0.15 -1.20 9.03 37.16 0.34 -0.86 16 27 C 0.12 1.05 5.68 -3.95 -0.02 1.03 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.09 0.51 7.69 -51.93 -0.40 0.11 16 34 H 0.09 0.49 7.94 -51.93 -0.41 0.08 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.49 5.94 -51.93 -0.31 0.19 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.40 3.88 8.31 -40.82 -0.34 3.54 16 40 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 41 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.06 0.56 7.36 -51.93 -0.38 0.17 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.95 7.01 -51.93 -0.36 0.58 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 391.64 15.07 5.90 5.90 Total: -1.00 -34.88 391.64 -9.08 -43.96 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.06 Total: 0.10 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 0.15 Total: -4.04 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -0.02 Total: -40.20 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.08 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.88 -9.08 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.079 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds