Wall clock time and date at job start Tue Mar 31 2020 15:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47118 * 2 1 4 4 C 1.50702 * 109.47159 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00262 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99928 * 179.72352 * 4 3 2 7 7 C 1.46923 * 120.63273 * 0.28271 * 6 4 3 8 8 C 1.53188 * 108.78248 * 126.36632 * 7 6 4 9 9 C 1.53041 * 109.31323 * 54.63155 * 8 7 6 10 10 H 1.09004 * 109.45546 * 58.65884 * 9 8 7 11 11 N 1.46500 * 109.46188 * 178.61951 * 9 8 7 12 12 C 1.34773 * 119.99709 * 275.00215 * 11 9 8 13 13 O 1.21282 * 120.00444 * 359.97438 * 12 11 9 14 14 C 1.50703 * 120.00023 * 179.97438 * 12 11 9 15 15 S 1.80997 * 109.47430 * 180.02562 * 14 12 11 16 16 C 1.76200 * 100.00152 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99812 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99970 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48512 * 109.46918 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47288 * 120.00294 * 20 18 16 23 23 H 1.48500 * 109.47578 * 240.00707 * 20 18 16 24 24 C 1.53042 * 109.53960 * 298.64003 * 9 8 7 25 25 H 1.09003 * 109.49533 * 301.37974 * 24 9 8 26 26 C 1.52999 * 109.49733 * 181.31305 * 24 9 8 27 27 C 1.46929 * 120.63092 * 179.97438 * 6 4 3 28 28 H 1.08998 * 109.46965 * 299.99512 * 1 2 3 29 29 H 1.09003 * 109.47184 * 60.00331 * 1 2 3 30 30 H 1.09001 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47131 * 240.00065 * 2 1 3 32 32 H 1.09000 * 109.47504 * 120.00369 * 2 1 3 33 33 H 1.09004 * 109.47066 * 60.00025 * 3 2 1 34 34 H 1.08994 * 109.47405 * 299.99855 * 3 2 1 35 35 H 1.09001 * 109.58890 * 246.15338 * 7 6 4 36 36 H 1.08997 * 109.58518 * 6.57129 * 7 6 4 37 37 H 1.08997 * 109.49933 * 174.58934 * 8 7 6 38 38 H 1.09003 * 109.49114 * 294.65356 * 8 7 6 39 39 H 0.96995 * 120.00065 * 94.99727 * 11 9 8 40 40 H 1.08998 * 109.47312 * 300.00387 * 14 12 11 41 41 H 1.09009 * 109.46680 * 60.00181 * 14 12 11 42 42 H 0.97006 * 120.00135 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46752 * 60.00086 * 26 24 9 44 44 H 1.09000 * 109.46886 * 179.97438 * 26 24 9 45 45 H 1.08990 * 109.47443 * 300.00026 * 26 24 9 46 46 H 1.09003 * 109.58730 * 353.42298 * 27 6 4 47 47 H 1.09003 * 109.58586 * 113.84896 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6097 -0.0049 7 6 3.5003 3.8901 -0.0053 8 6 4.0123 4.7446 1.1584 9 6 5.5334 4.8793 1.0565 10 1 5.7943 5.3348 0.1012 11 7 6.0230 5.7233 2.1493 12 6 6.0246 7.0644 2.0161 13 8 5.6212 7.5726 0.9914 14 6 6.5276 7.9327 3.1405 15 16 6.4019 9.6735 2.6612 16 6 7.0383 10.4381 4.1155 17 1 7.3594 9.8305 4.9486 18 6 7.1281 11.8212 4.1899 19 7 6.7373 12.5616 3.1742 20 14 7.8022 12.6318 5.7319 21 1 8.1686 11.5863 6.7210 22 1 9.0063 13.4290 5.3861 23 1 6.7682 13.5243 6.3145 24 6 6.1776 3.4945 1.1540 25 1 5.8972 3.0285 2.0987 26 6 7.6997 3.6333 1.0849 27 6 5.6900 2.6259 -0.0038 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.6793 4.4098 -0.9466 36 1 2.4325 3.7085 0.1168 37 1 3.5556 5.7332 1.1124 38 1 3.7514 4.2668 2.1028 39 1 6.3458 5.3169 2.9687 40 1 5.9259 7.7574 4.0322 41 1 7.5688 7.6877 3.3508 42 1 6.7997 13.5283 3.2263 43 1 8.0458 4.2538 1.9115 44 1 8.1580 2.6469 1.1548 45 1 7.9796 4.0983 0.1397 46 1 6.0666 1.6104 0.1194 47 1 6.0516 3.0402 -0.9449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073745475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:26 Heat of formation + Delta-G solvation = -118.737095 kcal Electronic energy + Delta-G solvation = -25720.082602 eV Core-core repulsion = 22027.117434 eV Total energy + Delta-G solvation = -3692.965169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.61315 -40.57894 -38.73305 -35.85150 -35.36018 -34.58292 -33.93684 -32.49487 -30.41560 -29.41628 -27.69893 -27.29748 -25.71785 -23.52555 -22.77183 -21.66761 -21.43471 -20.06710 -19.70581 -18.25351 -17.79846 -17.29369 -16.98693 -16.90659 -16.87565 -16.37102 -15.92589 -15.46541 -15.41156 -15.00018 -14.79093 -14.69277 -14.44869 -14.10143 -14.06731 -13.74095 -13.46333 -13.20337 -13.15394 -13.00740 -12.91720 -12.86963 -12.78059 -12.59639 -12.42944 -12.18132 -12.01105 -11.91506 -11.72331 -11.62112 -11.49634 -11.15686 -10.93670 -10.81745 -10.26215 -10.07240 -9.73158 -8.65076 -8.34764 -6.11887 1.27754 1.41157 1.47370 1.57289 1.61050 1.64469 1.94880 2.25623 2.30842 2.99562 3.32209 3.42992 3.60669 3.74841 3.84779 3.96453 3.99481 4.05947 4.11933 4.22843 4.30398 4.32005 4.42230 4.53098 4.54130 4.63010 4.66211 4.69688 4.70391 4.75994 4.80380 4.86339 4.93126 5.04005 5.05657 5.19470 5.24327 5.28359 5.30354 5.42588 5.44478 5.49807 5.53084 6.20236 6.35362 6.52408 7.07104 7.13596 7.27012 8.74498 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.002109 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.167091 B =13272.333701 C =13803.668333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.137 4.137 4 C 0.510 3.490 5 O -0.586 6.586 6 N -0.612 5.612 7 C 0.112 3.888 8 C -0.142 4.142 9 C 0.151 3.849 10 H 0.070 0.930 11 N -0.708 5.708 12 C 0.538 3.462 13 O -0.560 6.560 14 C -0.131 4.131 15 S -0.147 6.147 16 C -0.546 4.546 17 H 0.082 0.918 18 C 0.013 3.987 19 N -0.910 5.910 20 Si 0.997 3.003 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.274 1.274 24 C -0.097 4.097 25 H 0.086 0.914 26 C -0.145 4.145 27 C 0.118 3.882 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.413 0.587 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.271 0.729 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 -24.729 -3.571 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.177 4.177 4 C 0.301 3.699 5 O -0.466 6.466 6 N -0.344 5.344 7 C -0.010 4.010 8 C -0.182 4.182 9 C 0.046 3.954 10 H 0.089 0.911 11 N -0.361 5.361 12 C 0.324 3.676 13 O -0.438 6.438 14 C -0.283 4.283 15 S 0.080 5.920 16 C -0.694 4.694 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.181 1.181 22 H -0.200 1.200 23 H -0.199 1.199 24 C -0.117 4.117 25 H 0.104 0.896 26 C -0.203 4.203 27 C -0.005 4.005 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.250 0.750 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.509 -24.286 -5.351 26.284 hybrid contribution 1.178 0.228 2.138 2.451 sum -7.331 -24.058 -3.213 25.355 Atomic orbital electron populations 1.21764 0.93819 1.02354 1.02689 1.21251 0.96609 0.94770 1.02020 1.21832 0.89248 1.00280 1.06292 1.21383 0.91724 0.82446 0.74370 1.90670 1.71528 1.32406 1.52030 1.48284 1.06891 1.06478 1.72775 1.21866 0.98114 0.82414 0.98652 1.22280 0.95247 1.00648 1.00000 1.21009 0.93674 0.90002 0.90676 0.91140 1.45804 1.65716 1.04356 1.20183 1.19958 0.77128 0.83076 0.87407 1.90689 1.47782 1.74289 1.31062 1.23388 1.05445 0.98621 1.00813 1.85528 1.84477 0.96316 1.25706 1.23240 1.48823 0.94854 1.02467 0.90027 1.26102 0.95205 0.96943 1.00894 1.70181 1.45869 1.06123 1.32526 0.84926 0.77861 0.78123 0.77172 1.18106 1.20003 1.19935 1.21565 0.96637 0.93405 1.00084 0.89557 1.21763 0.93264 1.02700 1.02554 1.21516 0.79648 1.01105 0.98216 0.91811 0.91734 0.92376 0.92810 0.92856 0.86799 0.86708 0.90405 0.86505 0.91289 0.90213 0.74985 0.87398 0.87496 0.92010 0.91854 0.90970 0.92808 0.89416 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.59 16 2 C -0.11 -1.42 5.22 30.59 0.16 -1.26 16 3 C -0.14 -1.52 4.05 29.85 0.12 -1.39 16 4 C 0.51 9.35 7.70 87.66 0.67 10.02 16 5 O -0.59 -15.53 15.40 -3.04 -0.05 -15.57 16 6 N -0.61 -9.72 2.98 -819.80 -2.44 -12.16 16 7 C 0.11 1.45 6.34 86.36 0.55 2.00 16 8 C -0.14 -2.44 5.65 30.67 0.17 -2.26 16 9 C 0.15 2.99 1.88 45.02 0.08 3.08 16 10 H 0.07 1.75 7.57 -2.39 -0.02 1.73 16 11 N -0.71 -16.04 4.36 -442.40 -1.93 -17.97 16 12 C 0.54 18.38 7.81 87.66 0.68 19.07 16 13 O -0.56 -24.13 15.52 -3.04 -0.05 -24.17 16 14 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 15 S -0.15 -7.98 20.57 -56.49 -1.16 -9.14 16 16 C -0.55 -30.70 9.50 67.95 0.65 -30.05 16 17 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 18 C 0.01 0.75 5.49 84.86 0.47 1.22 16 19 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 20 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 C -0.10 -1.49 2.44 -10.87 -0.03 -1.52 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 C -0.14 -2.16 9.03 71.98 0.65 -1.51 16 27 C 0.12 1.96 5.68 86.21 0.49 2.45 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.85 8.10 -2.38 -0.02 0.84 16 32 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 33 H 0.11 0.84 7.69 -2.38 -0.02 0.82 16 34 H 0.11 0.82 7.94 -2.39 -0.02 0.80 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.12 0.89 5.94 -2.39 -0.01 0.88 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.41 6.94 8.31 -92.71 -0.77 6.17 16 40 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 41 H 0.11 3.66 8.14 -2.39 -0.02 3.65 16 42 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 43 H 0.06 0.96 7.36 -2.39 -0.02 0.95 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.09 1.66 7.01 -2.39 -0.02 1.65 16 47 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -78.26 391.64 2.69 -75.57 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.18 Total: 18.58 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 5.82 Total: -5.30 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -4.09 Total: -85.09 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -0.09 Total: -39.75 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.14 kcal Total: -78.26 2.69 -75.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.168 kcal (2) G-P(sol) polarization free energy of solvation -78.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds