Wall clock time and date at job start Tue Mar 31 2020 15:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47054 * 2 1 4 4 C 1.50698 * 109.47105 * 180.02562 * 3 2 1 5 5 O 1.21286 * 120.00121 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00085 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99825 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.46246 * 324.74895 * 7 6 4 9 9 C 1.53034 * 109.45985 * 84.72744 * 7 6 4 10 10 C 1.53191 * 109.31398 * 58.65427 * 9 7 6 11 11 N 1.46923 * 108.77766 * 54.63599 * 10 9 7 12 12 C 1.34778 * 120.63728 * 126.41490 * 11 10 9 13 13 O 1.21272 * 120.00226 * 174.20881 * 12 11 10 14 14 C 1.50700 * 119.99467 * 354.21067 * 12 11 10 15 15 S 1.81000 * 109.46839 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99809 * 180.02562 * 15 14 12 17 17 H 1.08007 * 120.00406 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00023 * 180.02562 * 16 15 14 19 19 N 1.31632 * 120.00277 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99994 * 0.02562 * 18 16 15 21 21 H 1.48490 * 109.47087 * 90.00157 * 20 18 16 22 22 H 1.48507 * 109.47164 * 210.00222 * 20 18 16 23 23 H 1.48498 * 109.46974 * 330.00088 * 20 18 16 24 24 C 1.46931 * 118.73572 * 306.38867 * 11 10 9 25 25 H 1.08992 * 109.58982 * 293.68044 * 24 11 10 26 26 C 1.53007 * 109.58605 * 173.39490 * 24 11 10 27 27 C 1.53047 * 109.45700 * 204.79530 * 7 6 4 28 28 H 1.09004 * 109.47143 * 299.99603 * 1 2 3 29 29 H 1.08997 * 109.47351 * 60.00393 * 1 2 3 30 30 H 1.09002 * 109.46649 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47162 * 239.99615 * 2 1 3 32 32 H 1.09000 * 109.47299 * 120.00121 * 2 1 3 33 33 H 1.08996 * 109.47043 * 59.99930 * 3 2 1 34 34 H 1.08997 * 109.46721 * 299.99994 * 3 2 1 35 35 H 0.97003 * 119.99780 * 359.72644 * 6 4 3 36 36 H 1.09000 * 109.50005 * 178.60046 * 9 7 6 37 37 H 1.08997 * 109.49743 * 298.70323 * 9 7 6 38 38 H 1.09004 * 109.59116 * 174.42155 * 10 9 7 39 39 H 1.09001 * 109.58583 * 294.84492 * 10 9 7 40 40 H 1.09001 * 109.47436 * 300.00220 * 14 12 11 41 41 H 1.09003 * 109.47300 * 60.00253 * 14 12 11 42 42 H 0.96993 * 120.00674 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.46668 * 65.80270 * 26 24 11 44 44 H 1.08997 * 109.46688 * 185.80155 * 26 24 11 45 45 H 1.08997 * 109.46917 * 305.80434 * 26 24 11 46 46 H 1.08994 * 109.50022 * 61.29549 * 27 7 6 47 47 H 1.08999 * 109.49273 * 181.39618 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0013 7 6 5.6859 2.6097 -0.0013 8 1 6.0490 1.7707 0.5923 9 6 6.1956 2.4763 -1.4381 10 6 5.6554 3.6384 -2.2773 11 7 6.0184 4.9030 -1.6232 12 6 6.6714 5.8656 -2.3040 13 8 6.8727 6.9438 -1.7867 14 6 7.1514 5.6020 -3.7079 15 16 7.9839 7.0763 -4.3477 16 6 8.4280 6.5041 -5.9539 17 1 8.1685 5.5017 -6.2611 18 6 9.1114 7.3416 -6.8246 19 7 9.4437 6.9141 -8.0244 20 14 9.5609 9.0752 -6.2933 21 1 10.8985 9.0641 -5.6487 22 1 9.5915 9.9650 -7.4819 23 1 8.5499 9.5745 -5.3271 24 6 5.6554 5.0985 -0.2130 25 1 4.5706 5.1447 -0.1179 26 6 6.2711 6.4022 0.2992 27 6 6.1957 3.9200 0.6032 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9562 -0.8900 35 1 3.7359 3.4498 -0.0053 36 1 7.2854 2.5012 -1.4413 37 1 5.8515 1.5321 -1.8600 38 1 6.0940 3.6039 -3.2746 39 1 4.5704 3.5630 -2.3503 40 1 7.8487 4.7642 -3.7023 41 1 6.2996 5.3614 -4.3440 42 1 9.9209 7.4994 -8.6330 43 1 5.8187 7.2465 -0.2209 44 1 6.0881 6.4944 1.3697 45 1 7.3451 6.3942 0.1135 46 1 5.8517 4.0033 1.6340 47 1 7.2854 3.9312 0.5807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074771507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:11 Heat of formation + Delta-G solvation = -99.055719 kcal Electronic energy + Delta-G solvation = -26315.091973 eV Core-core repulsion = 22622.980253 eV Total energy + Delta-G solvation = -3692.111720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86940 -40.63188 -38.55728 -35.49364 -35.18511 -34.67885 -34.25121 -32.39786 -30.55274 -28.84779 -28.17194 -27.82170 -25.58510 -23.39341 -23.25936 -21.73273 -21.26522 -20.16706 -19.37467 -18.14196 -17.83494 -17.34170 -17.15492 -16.99059 -16.82672 -16.31348 -15.82302 -15.49275 -15.15004 -15.05637 -14.98170 -14.76008 -14.61350 -14.43272 -13.95490 -13.79033 -13.40599 -13.36595 -13.26972 -13.04455 -12.91585 -12.80858 -12.66863 -12.60322 -12.58983 -12.11077 -12.03052 -11.97932 -11.86632 -11.76749 -11.59650 -11.17794 -10.80579 -10.52949 -10.15754 -10.10342 -9.59810 -8.99538 -8.52164 -6.22812 0.97981 1.30979 1.45412 1.53108 1.56123 1.71166 2.04082 2.24120 2.25021 2.67590 2.86015 3.45996 3.69433 3.70816 3.84063 3.90719 3.99534 4.05909 4.15788 4.17128 4.18420 4.29292 4.33247 4.42023 4.59497 4.63140 4.72737 4.75774 4.80667 4.81587 4.87627 4.91085 4.94634 4.98934 5.06034 5.23767 5.26628 5.30730 5.39594 5.47028 5.55411 5.69719 5.71477 6.10431 6.26689 6.59221 6.92808 7.15136 7.31759 8.60347 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.002578 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.956512 B =10858.735182 C =11579.998276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.136 4.136 4 C 0.510 3.490 5 O -0.585 6.585 6 N -0.715 5.715 7 C 0.152 3.848 8 H 0.082 0.918 9 C -0.142 4.142 10 C 0.108 3.892 11 N -0.602 5.602 12 C 0.536 3.464 13 O -0.542 6.542 14 C -0.111 4.111 15 S -0.170 6.170 16 C -0.530 4.530 17 H 0.059 0.941 18 C 0.044 3.956 19 N -0.918 5.918 20 Si 0.916 3.084 21 H -0.263 1.263 22 H -0.260 1.260 23 H -0.235 1.235 24 C 0.145 3.855 25 H 0.095 0.905 26 C -0.134 4.134 27 C -0.128 4.128 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.412 0.588 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.277 0.723 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.039 0.961 46 H 0.105 0.895 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.516 -10.330 21.226 29.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.176 4.176 4 C 0.298 3.702 5 O -0.465 6.465 6 N -0.368 5.368 7 C 0.047 3.953 8 H 0.100 0.900 9 C -0.181 4.181 10 C -0.015 4.015 11 N -0.337 5.337 12 C 0.324 3.676 13 O -0.419 6.419 14 C -0.262 4.262 15 S 0.057 5.943 16 C -0.677 4.677 17 H 0.077 0.923 18 C -0.161 4.161 19 N -0.556 5.556 20 Si 0.738 3.262 21 H -0.188 1.188 22 H -0.184 1.184 23 H -0.159 1.159 24 C 0.043 3.957 25 H 0.113 0.887 26 C -0.191 4.191 27 C -0.166 4.166 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.058 0.942 46 H 0.124 0.876 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.716 -9.459 21.827 29.074 hybrid contribution 0.396 -0.557 -1.347 1.511 sum -16.319 -10.015 20.480 28.037 Atomic orbital electron populations 1.21768 0.94016 1.02223 1.02667 1.21245 0.96474 0.95163 1.01925 1.21775 0.89335 0.99957 1.06515 1.21337 0.91537 0.83056 0.74235 1.90702 1.71599 1.32942 1.51284 1.46119 1.06664 1.09087 1.74964 1.20768 0.80348 0.98474 0.95691 0.90012 1.22243 1.01591 0.98183 0.96076 1.21846 1.01319 0.81610 0.96680 1.48105 1.57263 1.16314 1.12013 1.19857 0.77316 0.84025 0.86444 1.90748 1.57054 1.25331 1.68806 1.23361 1.03831 1.01950 0.97073 1.84603 1.74142 1.20370 1.15190 1.22465 1.42812 1.02996 0.99440 0.92251 1.25593 0.93987 1.02517 0.94019 1.70018 1.39264 1.38699 1.07588 0.85842 0.80843 0.79792 0.79731 1.18760 1.18386 1.15874 1.21401 0.99919 0.95710 0.78715 0.88721 1.22058 1.00716 0.96239 1.00082 1.22250 1.02071 0.91956 1.00364 0.91601 0.91918 0.92631 0.93125 0.92806 0.86458 0.86906 0.75059 0.90768 0.90569 0.89831 0.89341 0.87906 0.87562 0.91378 0.92448 0.91108 0.94176 0.87633 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.11 -1.34 5.22 30.59 0.16 -1.18 16 3 C -0.14 -1.18 5.70 29.85 0.17 -1.01 16 4 C 0.51 7.79 7.79 87.66 0.68 8.48 16 5 O -0.59 -14.46 15.65 -3.05 -0.05 -14.51 16 6 N -0.72 -8.11 4.26 -442.40 -1.89 -10.00 16 7 C 0.15 2.22 2.78 45.02 0.13 2.35 16 8 H 0.08 1.44 7.58 -2.39 -0.02 1.42 16 9 C -0.14 -2.45 5.77 30.67 0.18 -2.28 16 10 C 0.11 1.98 6.09 86.36 0.53 2.51 16 11 N -0.60 -13.61 2.97 -795.01 -2.36 -15.97 16 12 C 0.54 17.61 7.52 87.66 0.66 18.27 16 13 O -0.54 -21.08 11.43 -3.00 -0.03 -21.11 16 14 C -0.11 -4.17 4.51 71.24 0.32 -3.85 16 15 S -0.17 -8.46 18.55 -56.49 -1.05 -9.51 16 16 C -0.53 -30.80 10.04 67.95 0.68 -30.12 16 17 H 0.06 3.66 8.03 -2.91 -0.02 3.64 16 18 C 0.04 2.59 5.50 84.86 0.47 3.06 16 19 N -0.92 -55.97 13.97 21.65 0.30 -55.67 16 20 Si 0.92 44.82 27.74 68.60 1.90 46.72 16 21 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.23 -11.39 6.74 99.48 0.67 -10.72 16 24 C 0.14 2.46 3.19 44.98 0.14 2.61 16 25 H 0.10 1.12 6.65 -2.39 -0.02 1.10 16 26 C -0.13 -2.98 7.61 71.98 0.55 -2.43 16 27 C -0.13 -1.69 5.07 30.68 0.16 -1.54 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 32 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 33 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.11 0.59 8.14 -2.39 -0.02 0.58 16 35 H 0.41 2.70 6.87 -92.71 -0.64 2.06 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.72 5.93 -2.38 -0.01 1.71 16 39 H 0.09 1.30 7.74 -2.39 -0.02 1.28 16 40 H 0.10 3.69 7.93 -2.39 -0.02 3.67 16 41 H 0.11 3.73 7.71 -2.39 -0.02 3.71 16 42 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.06 1.60 6.54 -2.39 -0.02 1.58 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.04 1.13 6.96 -2.39 -0.02 1.11 16 46 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -76.08 380.09 2.64 -73.44 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.28 Total: 12.25 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 5.53 Total: -5.65 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -3.95 Total: -81.64 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.08 Total: -35.62 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.90 Total: 46.72 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.05 Total: -9.51 kcal Total: -76.08 2.64 -73.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074771507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.613 kcal (2) G-P(sol) polarization free energy of solvation -76.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds