Wall clock time and date at job start Tue Mar 31 2020 15:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50703 * 109.47126 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99926 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99773 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99531 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.46687 * 34.97097 * 7 6 4 9 9 C 1.53047 * 109.45792 * 274.99948 * 7 6 4 10 10 C 1.53190 * 109.31231 * 178.62116 * 9 7 6 11 11 N 1.46920 * 108.77801 * 54.63047 * 10 9 7 12 12 C 1.34784 * 120.62824 * 126.37021 * 11 10 9 13 13 O 1.21279 * 119.99757 * 180.02562 * 12 11 10 14 14 C 1.50695 * 120.00018 * 0.02562 * 12 11 10 15 15 S 1.80998 * 109.47206 * 179.97438 * 14 12 11 16 16 C 1.76200 * 100.00032 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00186 * 0.02562 * 16 15 14 18 18 C 1.38800 * 119.99905 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00166 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99948 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47141 * 90.00428 * 20 18 16 22 22 H 1.48499 * 109.47155 * 210.00212 * 20 18 16 23 23 H 1.48496 * 109.47380 * 330.00317 * 20 18 16 24 24 C 1.46924 * 118.74232 * 306.39764 * 11 10 9 25 25 H 1.09006 * 109.59075 * 173.54053 * 24 11 10 26 26 C 1.53007 * 109.58287 * 293.81773 * 24 11 10 27 27 C 1.53041 * 109.45827 * 154.93772 * 7 6 4 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 0.96998 * 120.00166 * 0.02562 * 6 4 3 36 36 H 1.09001 * 109.49706 * 298.56878 * 9 7 6 37 37 H 1.08999 * 109.49753 * 58.63188 * 9 7 6 38 38 H 1.08998 * 109.58572 * 174.42481 * 10 9 7 39 39 H 1.09000 * 109.58382 * 294.70347 * 10 9 7 40 40 H 1.09003 * 109.46988 * 299.99566 * 14 12 11 41 41 H 1.08998 * 109.47384 * 59.99613 * 14 12 11 42 42 H 0.96995 * 120.00092 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.46798 * 60.00060 * 26 24 11 44 44 H 1.09002 * 109.46589 * 180.02562 * 26 24 11 45 45 H 1.08996 * 109.46942 * 299.99946 * 26 24 11 46 46 H 1.09001 * 109.49280 * 301.33326 * 27 7 6 47 47 H 1.08993 * 109.50157 * 61.42677 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6098 0.0002 7 6 5.6859 2.6097 0.0003 8 1 6.0491 1.7674 -0.5884 9 6 6.1957 2.4845 1.4379 10 6 7.7272 2.4501 1.4312 11 7 8.2237 3.6334 0.7158 12 6 9.1172 4.4605 1.2938 13 8 9.5191 5.4343 0.6930 14 6 9.6168 4.1752 2.6866 15 16 10.7971 5.4563 3.1785 16 6 11.2062 4.8906 4.7962 17 1 10.7509 3.9918 5.1853 18 6 12.1144 5.5995 5.5703 19 7 12.6698 6.6946 5.0960 20 14 12.5487 4.9994 7.2851 21 1 13.7114 4.0789 7.2078 22 1 12.8933 6.1610 8.1436 23 1 11.3867 4.2811 7.8673 24 6 7.7272 3.8983 -0.6414 25 1 8.0997 4.8635 -0.9849 26 6 8.2087 2.7967 -1.5878 27 6 6.1958 3.9166 -0.6115 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.7359 3.4498 -0.0001 36 1 5.8536 3.3395 2.0210 37 1 5.8125 1.5652 1.8810 38 1 8.0974 2.4607 2.4563 39 1 8.0701 1.5459 0.9283 40 1 8.7760 4.1698 3.3803 41 1 10.1086 3.2026 2.7042 42 1 13.3048 7.1898 5.6367 43 1 7.8311 1.8331 -1.2455 44 1 7.8398 2.9953 -2.5940 45 1 9.2985 2.7771 -1.5979 46 1 5.8132 4.0163 -1.6272 47 1 5.8537 4.7581 -0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074771508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:20 Heat of formation + Delta-G solvation = -93.657098 kcal Electronic energy + Delta-G solvation = -25856.897044 eV Core-core repulsion = 22165.019426 eV Total energy + Delta-G solvation = -3691.877618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.67045 -39.64330 -37.51301 -34.96817 -34.61812 -32.91722 -32.43088 -31.43009 -29.06966 -28.31208 -27.59604 -25.49302 -24.27152 -23.05063 -22.04036 -20.94787 -20.55337 -18.67106 -17.79881 -17.23039 -17.03449 -16.25775 -16.06226 -15.65249 -15.20759 -14.80650 -14.71715 -14.47780 -14.30737 -14.03268 -13.93520 -13.49986 -13.39252 -13.21353 -13.07028 -12.56945 -12.43877 -12.27751 -12.22476 -12.07121 -11.87894 -11.67015 -11.57399 -11.34330 -11.24572 -11.14150 -11.06369 -11.01776 -10.76076 -10.54476 -10.08025 -9.80811 -9.40853 -9.28498 -9.06843 -8.56298 -8.22846 -6.50385 -6.21870 -3.92425 2.35597 2.80061 2.90761 3.07092 3.22234 3.25591 3.30036 3.58217 4.19937 4.27960 4.43418 4.50021 4.54352 4.61230 4.73335 4.88354 4.93245 5.00568 5.02002 5.07750 5.13255 5.19969 5.20286 5.28231 5.31505 5.37264 5.41360 5.55386 5.56397 5.64315 5.66252 5.72862 5.75150 5.78611 5.87222 5.90601 5.93132 5.99199 6.11760 6.17595 6.20876 6.66691 7.18439 7.55131 7.59622 7.93609 8.35009 8.55252 9.23477 10.85505 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018187 B = 0.002354 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.153708 B =11893.273317 C =12966.320017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.511 3.489 5 O -0.539 6.539 6 N -0.729 5.729 7 C 0.144 3.856 8 H 0.093 0.907 9 C -0.144 4.144 10 C 0.111 3.889 11 N -0.616 5.616 12 C 0.537 3.463 13 O -0.517 6.517 14 C -0.151 4.151 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.143 3.857 25 H 0.106 0.894 26 C -0.164 4.164 27 C -0.135 4.135 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.909 -10.797 -12.399 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.182 4.182 4 C 0.298 3.702 5 O -0.416 6.416 6 N -0.380 5.380 7 C 0.040 3.960 8 H 0.111 0.889 9 C -0.183 4.183 10 C -0.013 4.013 11 N -0.353 5.353 12 C 0.325 3.675 13 O -0.391 6.391 14 C -0.302 4.302 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C 0.039 3.961 25 H 0.124 0.876 26 C -0.222 4.222 27 C -0.174 4.174 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.234 0.766 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.738 -9.954 -13.255 27.337 hybrid contribution -0.473 -1.085 1.895 2.235 sum -22.210 -11.039 -11.360 27.280 Atomic orbital electron populations 1.21799 0.95475 1.02029 1.01772 1.21279 0.95259 0.94631 1.03607 1.21740 0.91756 1.00312 1.04374 1.20799 0.90350 0.83618 0.75446 1.90712 1.70524 1.31265 1.49103 1.46177 1.07289 1.08738 1.75767 1.21021 0.79101 0.99153 0.96771 0.88891 1.22314 0.95847 1.03253 0.96921 1.21648 0.93071 0.88172 0.98446 1.48220 1.44625 1.26733 1.15687 1.20327 0.77613 0.81811 0.87733 1.90686 1.56366 1.27619 1.64462 1.23562 1.04648 1.06765 0.95179 1.85387 1.49781 1.30149 1.18121 1.22858 1.30575 1.14058 1.00806 0.90953 1.24992 0.95102 0.94624 0.98877 1.70017 1.27512 1.15378 1.37359 0.86171 0.78820 0.78348 0.82185 1.20261 1.20760 1.19702 1.21008 0.91775 1.00826 0.82538 0.87620 1.22186 1.02300 0.98821 0.98914 1.22207 0.96195 0.97174 1.01797 0.92371 0.92707 0.92658 0.91198 0.91262 0.88970 0.88901 0.76625 0.91072 0.90284 0.88863 0.91198 0.89293 0.89246 0.92194 0.92182 0.91581 0.91812 0.90219 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.11 -0.72 5.22 -26.73 -0.14 -0.86 16 3 C -0.14 -0.79 5.70 -27.88 -0.16 -0.95 16 4 C 0.51 4.52 7.79 -10.98 -0.09 4.44 16 5 O -0.54 -6.97 15.64 5.56 0.09 -6.88 16 6 N -0.73 -5.35 5.08 -53.76 -0.27 -5.62 16 7 C 0.14 1.30 2.21 -67.88 -0.15 1.15 16 8 H 0.09 0.97 5.92 -51.93 -0.31 0.66 16 9 C -0.14 -1.44 5.65 -26.61 -0.15 -1.59 16 10 C 0.11 1.26 5.92 -3.71 -0.02 1.24 16 11 N -0.62 -8.57 2.68 -165.23 -0.44 -9.01 16 12 C 0.54 10.10 7.72 -10.98 -0.08 10.01 16 13 O -0.52 -11.64 15.27 5.56 0.08 -11.56 16 14 C -0.15 -3.06 4.50 36.00 0.16 -2.90 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.53 -15.21 9.50 30.94 0.29 -14.92 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 20 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 24 C 0.14 1.66 3.21 -67.60 -0.22 1.44 16 25 H 0.11 1.44 7.00 -51.93 -0.36 1.07 16 26 C -0.16 -1.65 9.03 37.16 0.34 -1.32 16 27 C -0.13 -1.18 5.02 -26.61 -0.13 -1.32 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.40 1.92 8.60 -40.82 -0.35 1.57 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.09 5.93 -51.93 -0.31 0.79 16 39 H 0.07 0.74 7.51 -51.93 -0.39 0.35 16 40 H 0.09 1.67 7.69 -51.92 -0.40 1.27 16 41 H 0.09 1.70 7.94 -51.92 -0.41 1.28 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.06 0.58 5.73 -51.93 -0.30 0.28 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -35.54 388.43 -9.14 -44.67 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.87 Total: -0.63 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -0.08 Total: -3.96 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.02 Total: -40.03 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.17 Total: -18.44 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.54 -9.14 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074771508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.986 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds