Wall clock time and date at job start Tue Mar 31 2020 15:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50703 * 109.47126 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99926 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99773 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99531 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.46687 * 34.97097 * 7 6 4 9 9 C 1.53047 * 109.45792 * 274.99948 * 7 6 4 10 10 C 1.53190 * 109.31231 * 178.62116 * 9 7 6 11 11 N 1.46920 * 108.77801 * 54.63047 * 10 9 7 12 12 C 1.34784 * 120.62824 * 126.37021 * 11 10 9 13 13 O 1.21279 * 119.99757 * 180.02562 * 12 11 10 14 14 C 1.50695 * 120.00018 * 0.02562 * 12 11 10 15 15 S 1.80998 * 109.47206 * 179.97438 * 14 12 11 16 16 C 1.76200 * 100.00032 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00186 * 0.02562 * 16 15 14 18 18 C 1.38800 * 119.99905 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00166 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99948 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47141 * 90.00428 * 20 18 16 22 22 H 1.48499 * 109.47155 * 210.00212 * 20 18 16 23 23 H 1.48496 * 109.47380 * 330.00317 * 20 18 16 24 24 C 1.46924 * 118.74232 * 306.39764 * 11 10 9 25 25 H 1.09006 * 109.59075 * 173.54053 * 24 11 10 26 26 C 1.53007 * 109.58287 * 293.81773 * 24 11 10 27 27 C 1.53041 * 109.45827 * 154.93772 * 7 6 4 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 0.96998 * 120.00166 * 0.02562 * 6 4 3 36 36 H 1.09001 * 109.49706 * 298.56878 * 9 7 6 37 37 H 1.08999 * 109.49753 * 58.63188 * 9 7 6 38 38 H 1.08998 * 109.58572 * 174.42481 * 10 9 7 39 39 H 1.09000 * 109.58382 * 294.70347 * 10 9 7 40 40 H 1.09003 * 109.46988 * 299.99566 * 14 12 11 41 41 H 1.08998 * 109.47384 * 59.99613 * 14 12 11 42 42 H 0.96995 * 120.00092 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.46798 * 60.00060 * 26 24 11 44 44 H 1.09002 * 109.46589 * 180.02562 * 26 24 11 45 45 H 1.08996 * 109.46942 * 299.99946 * 26 24 11 46 46 H 1.09001 * 109.49280 * 301.33326 * 27 7 6 47 47 H 1.08993 * 109.50157 * 61.42677 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6098 0.0002 7 6 5.6859 2.6097 0.0003 8 1 6.0491 1.7674 -0.5884 9 6 6.1957 2.4845 1.4379 10 6 7.7272 2.4501 1.4312 11 7 8.2237 3.6334 0.7158 12 6 9.1172 4.4605 1.2938 13 8 9.5191 5.4343 0.6930 14 6 9.6168 4.1752 2.6866 15 16 10.7971 5.4563 3.1785 16 6 11.2062 4.8906 4.7962 17 1 10.7509 3.9918 5.1853 18 6 12.1144 5.5995 5.5703 19 7 12.6698 6.6946 5.0960 20 14 12.5487 4.9994 7.2851 21 1 13.7114 4.0789 7.2078 22 1 12.8933 6.1610 8.1436 23 1 11.3867 4.2811 7.8673 24 6 7.7272 3.8983 -0.6414 25 1 8.0997 4.8635 -0.9849 26 6 8.2087 2.7967 -1.5878 27 6 6.1958 3.9166 -0.6115 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.7359 3.4498 -0.0001 36 1 5.8536 3.3395 2.0210 37 1 5.8125 1.5652 1.8810 38 1 8.0974 2.4607 2.4563 39 1 8.0701 1.5459 0.9283 40 1 8.7760 4.1698 3.3803 41 1 10.1086 3.2026 2.7042 42 1 13.3048 7.1898 5.6367 43 1 7.8311 1.8331 -1.2455 44 1 7.8398 2.9953 -2.5940 45 1 9.2985 2.7771 -1.5979 46 1 5.8132 4.0163 -1.6272 47 1 5.8537 4.7581 -0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074771508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:18 Heat of formation + Delta-G solvation = -117.394288 kcal Electronic energy + Delta-G solvation = -25857.926366 eV Core-core repulsion = 22165.019426 eV Total energy + Delta-G solvation = -3692.906940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.64685 -40.61598 -38.68937 -35.82044 -35.20881 -34.59225 -33.95057 -32.33846 -30.47833 -29.10115 -28.28213 -27.66993 -25.15693 -23.92023 -22.71045 -22.01540 -21.22841 -19.96112 -19.42691 -18.43468 -17.86909 -17.11893 -16.90569 -16.86329 -16.76441 -16.54055 -15.91060 -15.41204 -15.21298 -15.15070 -14.84414 -14.58859 -14.40274 -14.33666 -14.03961 -13.93306 -13.43919 -13.19477 -13.16405 -13.04962 -12.90239 -12.86842 -12.68625 -12.60923 -12.49047 -12.21545 -12.06591 -12.00561 -11.72716 -11.60384 -11.40148 -11.15129 -10.89863 -10.80376 -10.28504 -10.05551 -9.75002 -8.67844 -8.35373 -6.13544 1.24197 1.41613 1.44530 1.54569 1.55419 1.69810 2.04382 2.21767 2.26460 2.98603 3.22707 3.50236 3.72250 3.77391 3.84960 3.94498 3.99618 4.08934 4.10932 4.15558 4.23198 4.33630 4.40274 4.42277 4.50215 4.57864 4.61622 4.72079 4.73521 4.80631 4.83926 4.90850 4.95287 4.96072 5.03997 5.09498 5.26054 5.30108 5.34816 5.40982 5.45967 5.53312 5.58652 6.18911 6.25370 6.60817 7.05826 7.12105 7.31704 8.73762 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018187 B = 0.002354 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.153708 B =11893.273317 C =12966.320017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.135 4.135 4 C 0.508 3.492 5 O -0.585 6.585 6 N -0.716 5.716 7 C 0.149 3.851 8 H 0.084 0.916 9 C -0.136 4.136 10 C 0.105 3.895 11 N -0.601 5.601 12 C 0.536 3.464 13 O -0.563 6.563 14 C -0.126 4.126 15 S -0.148 6.148 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 0.998 3.002 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.258 1.258 24 C 0.135 3.865 25 H 0.084 0.916 26 C -0.157 4.157 27 C -0.122 4.122 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.415 0.585 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.271 0.729 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.045 0.955 46 H 0.105 0.895 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.333 -12.028 -12.167 30.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.174 4.174 4 C 0.296 3.704 5 O -0.465 6.465 6 N -0.368 5.368 7 C 0.044 3.956 8 H 0.102 0.898 9 C -0.175 4.175 10 C -0.018 4.018 11 N -0.335 5.335 12 C 0.324 3.676 13 O -0.442 6.442 14 C -0.277 4.277 15 S 0.079 5.921 16 C -0.694 4.694 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.546 5.546 20 Si 0.820 3.180 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.182 1.182 24 C 0.032 3.968 25 H 0.102 0.898 26 C -0.215 4.215 27 C -0.161 4.161 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.252 0.748 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.123 0.877 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.223 -11.198 -13.044 29.703 hybrid contribution 0.195 -0.775 1.719 1.896 sum -24.028 -11.972 -11.325 29.136 Atomic orbital electron populations 1.21765 0.93928 1.02248 1.02688 1.21253 0.96543 0.95147 1.01935 1.21768 0.89146 0.99974 1.06525 1.21392 0.91648 0.83062 0.74297 1.90698 1.71612 1.32908 1.51275 1.46038 1.06536 1.09295 1.74933 1.20850 0.80215 0.98752 0.95803 0.89843 1.22226 0.94414 1.03145 0.97750 1.21861 0.94280 0.87418 0.98238 1.48195 1.42714 1.26125 1.16503 1.20063 0.78401 0.82002 0.87113 1.90670 1.58438 1.29790 1.65273 1.23389 1.03209 1.04393 0.96691 1.85542 1.52903 1.34513 1.19122 1.23186 1.30896 1.14399 1.00913 0.90040 1.26121 0.94748 0.94597 1.03659 1.70179 1.28291 1.16880 1.39297 0.84961 0.78975 0.77968 0.76134 1.19353 1.20210 1.18227 1.21235 0.93840 1.00458 0.81245 0.89751 1.22138 1.01160 0.98457 0.99767 1.22103 0.93595 0.96986 1.03403 0.92611 0.91604 0.91847 0.93108 0.92840 0.86452 0.86841 0.74788 0.91078 0.90408 0.89057 0.89808 0.87570 0.87756 0.91976 0.91411 0.89254 0.93607 0.87675 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 71.98 0.71 -0.41 16 2 C -0.11 -1.31 5.22 30.60 0.16 -1.15 16 3 C -0.13 -1.13 5.70 29.85 0.17 -0.96 16 4 C 0.51 7.90 7.79 87.66 0.68 8.58 16 5 O -0.58 -14.54 15.64 -3.03 -0.05 -14.59 16 6 N -0.72 -8.50 5.08 -442.39 -2.25 -10.74 16 7 C 0.15 2.33 2.21 45.02 0.10 2.43 16 8 H 0.08 1.55 5.92 -2.39 -0.01 1.54 16 9 C -0.14 -2.46 5.65 30.67 0.17 -2.29 16 10 C 0.10 2.24 5.92 86.36 0.51 2.75 16 11 N -0.60 -16.25 2.68 -795.04 -2.13 -18.38 16 12 C 0.54 20.36 7.72 87.65 0.68 21.04 16 13 O -0.56 -26.25 15.27 -3.03 -0.05 -26.30 16 14 C -0.13 -5.11 4.50 71.23 0.32 -4.79 16 15 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 16 C -0.55 -31.36 9.50 67.95 0.65 -30.71 16 17 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 18 C 0.01 0.78 5.49 84.86 0.47 1.24 16 19 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 20 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 C 0.14 3.00 3.21 44.98 0.14 3.15 16 25 H 0.08 2.30 7.00 -2.38 -0.02 2.28 16 26 C -0.16 -2.93 9.03 71.98 0.65 -2.28 16 27 C -0.12 -1.84 5.02 30.67 0.15 -1.69 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 32 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 33 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.42 2.51 8.60 -92.71 -0.80 1.71 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 2.00 5.93 -2.39 -0.01 1.98 16 39 H 0.08 1.61 7.51 -2.39 -0.02 1.59 16 40 H 0.11 3.92 7.69 -2.39 -0.02 3.91 16 41 H 0.10 3.91 7.94 -2.40 -0.02 3.89 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 43 H 0.07 1.17 5.73 -2.39 -0.01 1.16 16 44 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -80.57 388.43 2.41 -78.16 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.16 Total: 16.33 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 5.57 Total: -5.11 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -4.09 Total: -84.84 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.09 Total: -40.89 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -80.57 2.41 -78.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074771508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.233 kcal (2) G-P(sol) polarization free energy of solvation -80.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds