Wall clock time and date at job start Tue Mar 31 2020 15:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 C 1.50699 * 109.47088 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99991 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00385 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00244 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.45922 * 325.02743 * 7 6 4 9 9 C 1.53038 * 109.45996 * 84.99960 * 7 6 4 10 10 C 1.53195 * 109.31415 * 181.37295 * 9 7 6 11 11 N 1.46924 * 108.77347 * 305.36595 * 10 9 7 12 12 C 1.34773 * 120.63306 * 233.58622 * 11 10 9 13 13 O 1.21280 * 120.00615 * 174.91824 * 12 11 10 14 14 C 1.50701 * 119.99605 * 354.91646 * 12 11 10 15 15 S 1.80999 * 109.47171 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00287 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99763 * 359.97438 * 16 15 14 18 18 C 1.38796 * 120.00237 * 179.72456 * 16 15 14 19 19 N 1.31631 * 119.99969 * 180.27788 * 18 16 15 20 20 Si 1.86797 * 120.00067 * 0.27757 * 18 16 15 21 21 H 1.48499 * 109.47464 * 89.99697 * 20 18 16 22 22 H 1.48495 * 109.47285 * 210.00208 * 20 18 16 23 23 H 1.48506 * 109.46850 * 329.99938 * 20 18 16 24 24 C 1.46933 * 118.73854 * 53.86042 * 11 10 9 25 25 H 1.08999 * 109.58495 * 65.92754 * 24 11 10 26 26 C 1.52997 * 109.58434 * 186.35214 * 24 11 10 27 27 C 1.53042 * 109.45056 * 205.06340 * 7 6 4 28 28 H 1.08992 * 109.47758 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46985 * 299.99753 * 1 2 3 30 30 H 1.08994 * 109.47479 * 59.99577 * 1 2 3 31 31 H 1.08998 * 109.46768 * 240.00043 * 2 1 3 32 32 H 1.08998 * 109.47036 * 120.00211 * 2 1 3 33 33 H 1.08998 * 109.47294 * 60.00365 * 3 2 1 34 34 H 1.08998 * 109.47368 * 300.00008 * 3 2 1 35 35 H 0.96999 * 119.99218 * 0.02562 * 6 4 3 36 36 H 1.08994 * 109.49601 * 61.42157 * 9 7 6 37 37 H 1.08998 * 109.52511 * 301.33812 * 9 7 6 38 38 H 1.08999 * 109.58835 * 185.57988 * 10 9 7 39 39 H 1.09002 * 109.58378 * 65.15100 * 10 9 7 40 40 H 1.08995 * 109.47408 * 60.00194 * 14 12 11 41 41 H 1.08999 * 109.47077 * 299.99955 * 14 12 11 42 42 H 0.97006 * 119.99901 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.47284 * 55.76860 * 26 24 11 44 44 H 1.09003 * 109.46942 * 175.76718 * 26 24 11 45 45 H 1.09002 * 109.47427 * 295.76572 * 26 24 11 46 46 H 1.09004 * 109.49297 * 298.57479 * 27 7 6 47 47 H 1.09004 * 109.49736 * 58.66761 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0013 7 6 5.6859 2.6096 -0.0013 8 1 6.0490 1.7678 0.5882 9 6 6.1957 2.4831 -1.4387 10 6 7.7273 2.4489 -1.4320 11 7 8.2235 3.6331 -0.7178 12 6 9.1175 4.4593 -1.2961 13 8 9.4500 5.4818 -0.7349 14 6 9.7042 4.1126 -2.6403 15 16 10.8631 5.4080 -3.1450 16 6 11.3833 4.7642 -4.7005 17 1 10.9835 3.8266 -5.0578 18 6 12.3028 5.4644 -5.4690 19 7 12.6872 4.9860 -6.6335 20 14 12.9948 7.0855 -4.8508 21 1 14.2250 6.8291 -4.0595 22 1 13.3230 7.9570 -6.0075 23 1 11.9865 7.7594 -3.9937 24 6 7.7313 3.8961 0.6414 25 1 8.0748 3.1093 1.3131 26 6 8.2548 5.2506 1.1233 27 6 6.1956 3.9172 0.6093 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.7359 3.4497 -0.0009 36 1 5.8535 3.3375 -2.0226 37 1 5.8133 1.5633 -1.8813 38 1 8.0975 2.4587 -2.4571 39 1 8.0703 1.5465 -0.9259 40 1 8.9042 4.0334 -3.3764 41 1 10.2309 3.1607 -2.5722 42 1 13.3302 5.4752 -7.1705 43 1 7.9673 6.0251 0.4122 44 1 7.8285 5.4781 2.1004 45 1 9.3414 5.2136 1.2007 46 1 5.8533 4.7581 0.0061 47 1 5.8130 4.0178 1.6250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074771509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:24 Heat of formation + Delta-G solvation = -101.625325 kcal Electronic energy + Delta-G solvation = -25897.033298 eV Core-core repulsion = 22204.810152 eV Total energy + Delta-G solvation = -3692.223146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72078 -40.70459 -38.48660 -35.78170 -35.21853 -34.67867 -34.25776 -32.41864 -30.50841 -28.91232 -28.13488 -27.81915 -25.31079 -23.57955 -22.88584 -21.90286 -21.24690 -20.44877 -19.46651 -18.08165 -17.77903 -17.28936 -17.09285 -17.04918 -16.79715 -16.67575 -15.84535 -15.37770 -15.12537 -15.08897 -14.99314 -14.85884 -14.57074 -14.36885 -13.94544 -13.58023 -13.47664 -13.35062 -13.28336 -13.03777 -12.98162 -12.89072 -12.74957 -12.61383 -12.58357 -12.10291 -12.03205 -12.01150 -11.86621 -11.70697 -11.60801 -11.17719 -10.86517 -10.53240 -10.14377 -10.07496 -9.66648 -8.99619 -8.52020 -6.22743 0.97701 1.31116 1.45382 1.53264 1.54143 1.68742 2.03481 2.20247 2.24451 2.67585 2.86081 3.45251 3.67991 3.73691 3.81070 3.93692 3.98817 4.06590 4.14704 4.17444 4.20916 4.32426 4.36716 4.41729 4.50676 4.61165 4.67041 4.72770 4.78706 4.79919 4.84745 4.89075 4.92228 4.98879 5.09367 5.24312 5.27628 5.29603 5.38059 5.45366 5.52547 5.69672 5.70263 6.10556 6.25973 6.59828 6.92858 7.13398 7.30920 8.60416 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021964 B = 0.002347 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.492670 B =11928.642854 C =12805.697318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.134 4.134 4 C 0.507 3.493 5 O -0.586 6.586 6 N -0.716 5.716 7 C 0.150 3.850 8 H 0.078 0.922 9 C -0.136 4.136 10 C 0.106 3.894 11 N -0.605 5.605 12 C 0.536 3.464 13 O -0.541 6.541 14 C -0.112 4.112 15 S -0.169 6.169 16 C -0.530 4.530 17 H 0.059 0.941 18 C 0.044 3.956 19 N -0.917 5.917 20 Si 0.916 3.084 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.235 1.235 24 C 0.146 3.854 25 H 0.087 0.913 26 C -0.128 4.128 27 C -0.124 4.124 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.416 0.584 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.277 0.723 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.047 0.953 46 H 0.076 0.924 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.276 -5.583 17.750 31.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.174 4.174 4 C 0.296 3.704 5 O -0.466 6.466 6 N -0.368 5.368 7 C 0.045 3.955 8 H 0.096 0.904 9 C -0.175 4.175 10 C -0.017 4.017 11 N -0.339 5.339 12 C 0.323 3.677 13 O -0.419 6.419 14 C -0.263 4.263 15 S 0.058 5.942 16 C -0.678 4.678 17 H 0.078 0.922 18 C -0.161 4.161 19 N -0.555 5.555 20 Si 0.738 3.262 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.159 1.159 24 C 0.043 3.957 25 H 0.105 0.895 26 C -0.186 4.186 27 C -0.163 4.163 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.253 0.747 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.278 -4.812 18.423 30.854 hybrid contribution 0.321 -0.610 -1.303 1.474 sum -23.957 -5.422 17.120 29.940 Atomic orbital electron populations 1.21762 0.93892 1.02253 1.02710 1.21255 0.96578 0.95180 1.01908 1.21765 0.89112 0.99951 1.06555 1.21410 0.91678 0.83080 0.74280 1.90703 1.71632 1.32973 1.51282 1.46029 1.06541 1.09275 1.74940 1.20800 0.80281 0.98710 0.95725 0.90386 1.22220 0.94478 1.03076 0.97760 1.21870 0.94240 0.87354 0.98254 1.48140 1.42817 1.26264 1.16723 1.19888 0.78796 0.83110 0.85880 1.90758 1.61293 1.26111 1.63766 1.23372 1.01869 1.02950 0.98085 1.84596 1.54520 1.32002 1.23099 1.22468 1.30386 1.10617 1.04310 0.92228 1.25592 0.95254 1.01137 0.94128 1.70024 1.32474 1.40734 1.12281 0.85841 0.80763 0.80008 0.79582 1.18748 1.18350 1.15891 1.21474 0.93637 0.98888 0.81700 0.89533 1.22039 1.00879 0.95341 1.00305 1.22270 0.93953 0.96719 1.03322 0.92630 0.91565 0.91832 0.93167 0.92854 0.86385 0.86821 0.74729 0.91052 0.90625 0.89235 0.89713 0.87532 0.87726 0.91380 0.92953 0.91253 0.93421 0.90545 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.42 16 2 C -0.11 -1.33 5.22 30.59 0.16 -1.17 16 3 C -0.13 -1.12 5.70 29.85 0.17 -0.95 16 4 C 0.51 7.89 7.79 87.66 0.68 8.57 16 5 O -0.59 -14.72 15.64 -3.03 -0.05 -14.77 16 6 N -0.72 -8.23 5.08 -442.41 -2.25 -10.48 16 7 C 0.15 2.25 2.41 45.02 0.11 2.36 16 8 H 0.08 1.43 7.58 -2.39 -0.02 1.41 16 9 C -0.14 -2.39 5.65 30.67 0.17 -2.22 16 10 C 0.11 2.15 6.33 86.36 0.55 2.70 16 11 N -0.60 -14.97 2.97 -794.22 -2.36 -17.32 16 12 C 0.54 18.28 7.62 87.66 0.67 18.95 16 13 O -0.54 -21.62 11.26 -3.03 -0.03 -21.66 16 14 C -0.11 -4.28 4.56 71.24 0.32 -3.96 16 15 S -0.17 -8.50 18.54 -56.49 -1.05 -9.55 16 16 C -0.53 -31.02 10.04 67.95 0.68 -30.34 16 17 H 0.06 3.70 8.03 -2.91 -0.02 3.67 16 18 C 0.04 2.60 5.50 84.86 0.47 3.07 16 19 N -0.92 -56.08 13.97 21.65 0.30 -55.78 16 20 Si 0.92 45.00 27.74 68.60 1.90 46.90 16 21 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.24 -11.45 6.73 99.48 0.67 -10.79 16 24 C 0.15 2.89 3.51 45.12 0.16 3.05 16 25 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 26 C -0.13 -3.05 7.60 71.98 0.55 -2.51 16 27 C -0.12 -1.68 4.86 30.82 0.15 -1.53 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.05 0.79 8.10 -2.39 -0.02 0.78 16 33 H 0.12 0.42 8.14 -2.39 -0.02 0.41 16 34 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.42 2.30 8.60 -92.71 -0.80 1.50 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 1.93 5.96 -2.39 -0.01 1.91 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.11 3.82 7.48 -2.40 -0.02 3.80 16 41 H 0.10 3.81 8.11 -2.40 -0.02 3.79 16 42 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 43 H 0.05 1.50 6.73 -2.38 -0.02 1.48 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.05 1.42 6.77 -2.39 -0.02 1.40 16 46 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -76.72 384.34 2.15 -74.58 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.12 Total: 12.48 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 5.55 Total: -4.41 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -4.30 Total: -83.59 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.08 Total: -36.43 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.90 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.05 Total: -9.55 kcal Total: -76.72 2.15 -74.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074771509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.047 kcal (2) G-P(sol) polarization free energy of solvation -76.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds