Wall clock time and date at job start Tue Mar 31 2020 15:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47163 * 2 1 4 4 C 1.50704 * 109.46920 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00183 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00006 * 179.97438 * 4 3 2 7 7 C 1.46931 * 120.63173 * 359.97438 * 6 4 3 8 8 C 1.53187 * 108.77858 * 233.63340 * 7 6 4 9 9 C 1.53036 * 109.33909 * 305.34763 * 8 7 6 10 10 H 1.09003 * 109.46509 * 301.36375 * 9 8 7 11 11 N 1.46501 * 109.46507 * 181.40161 * 9 8 7 12 12 C 1.34777 * 119.99978 * 84.99718 * 11 9 8 13 13 O 1.21277 * 119.99904 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99831 * 180.02562 * 12 11 9 15 15 S 1.81002 * 109.46941 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99959 * 179.97438 * 15 14 12 17 17 H 1.07993 * 120.00255 * 0.02562 * 16 15 14 18 18 C 1.38806 * 119.99871 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99850 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99893 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47308 * 59.99605 * 20 18 16 22 22 H 1.48498 * 109.47162 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47025 * 299.99986 * 20 18 16 24 24 C 1.53109 * 109.50477 * 61.34678 * 9 8 7 25 25 C 1.46925 * 120.63360 * 180.02562 * 6 4 3 26 26 H 1.09003 * 109.58612 * 6.58493 * 25 6 4 27 27 C 1.52994 * 109.58996 * 246.29925 * 25 6 4 28 28 H 1.09007 * 109.47122 * 60.00169 * 1 2 3 29 29 H 1.09000 * 109.47335 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47265 * 300.00571 * 1 2 3 31 31 H 1.08992 * 109.47174 * 239.99100 * 2 1 3 32 32 H 1.09009 * 109.46618 * 119.99901 * 2 1 3 33 33 H 1.09001 * 109.47232 * 60.00017 * 3 2 1 34 34 H 1.08999 * 109.46784 * 299.99636 * 3 2 1 35 35 H 1.09004 * 109.58377 * 113.84299 * 7 6 4 36 36 H 1.09003 * 109.70376 * 353.49345 * 7 6 4 37 37 H 1.09002 * 109.49796 * 65.31697 * 8 7 6 38 38 H 1.09000 * 109.49812 * 185.38420 * 8 7 6 39 39 H 0.96998 * 120.00039 * 265.00785 * 11 9 8 40 40 H 1.08996 * 109.47156 * 299.99449 * 14 12 11 41 41 H 1.08992 * 109.47461 * 60.00024 * 14 12 11 42 42 H 0.97001 * 119.99638 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.48980 * 178.70051 * 24 9 8 44 44 H 1.08999 * 109.51108 * 58.63043 * 24 9 8 45 45 H 1.08995 * 109.47289 * 59.99688 * 27 25 6 46 46 H 1.09004 * 109.47603 * 180.02562 * 27 25 6 47 47 H 1.09003 * 109.46971 * 300.00014 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0015 6 7 4.2209 2.6095 0.0002 7 6 3.5004 3.8900 -0.0014 8 6 4.0090 4.7406 -1.1696 9 6 5.5302 4.8763 -1.0730 10 1 5.7942 5.3349 -0.1200 11 7 6.0160 5.7171 -2.1700 12 6 6.0174 7.0587 -2.0411 13 8 5.6171 7.5698 -1.0168 14 6 6.5166 7.9235 -3.1698 15 16 6.3929 9.6657 -2.6950 16 6 7.0242 10.4259 -4.1539 17 1 7.3412 9.8160 -4.9868 18 6 7.1140 11.8088 -4.2326 19 7 6.7271 12.5523 -3.2177 20 14 7.7826 12.6148 -5.7794 21 1 6.9314 12.2439 -6.9384 22 1 7.7756 14.0902 -5.6115 23 1 9.1730 12.1508 -6.0180 24 6 6.1742 3.4904 -1.1674 25 6 5.6901 2.6257 0.0003 26 1 6.0667 1.6096 -0.1171 27 6 6.1966 3.2112 1.3199 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8898 32 1 1.8932 -0.5139 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 3.6823 4.4128 0.9376 36 1 2.4317 3.7102 -0.1184 37 1 3.7457 4.2595 -2.1116 38 1 3.5521 5.7292 -1.1258 39 1 6.3364 5.3082 -2.9892 40 1 7.5570 7.6783 -3.3826 41 1 5.9120 7.7450 -4.0590 42 1 6.7902 13.5187 -3.2726 43 1 7.2587 3.5895 -1.1217 44 1 5.8910 3.0208 -2.1094 45 1 5.8410 2.5996 2.1490 46 1 7.2866 3.2228 1.3177 47 1 5.8230 4.2290 1.4329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074840498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:48 Heat of formation + Delta-G solvation = -94.165123 kcal Electronic energy + Delta-G solvation = -25757.291891 eV Core-core repulsion = 22065.392243 eV Total energy + Delta-G solvation = -3691.899648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.85570 -39.37019 -37.78041 -34.81294 -34.65395 -32.85084 -32.45217 -31.57516 -29.17625 -28.17849 -27.72906 -25.51988 -24.26139 -23.28284 -22.25942 -20.64754 -20.37894 -18.80592 -17.86349 -17.56688 -16.46643 -16.36938 -16.20227 -15.75946 -15.07597 -14.83634 -14.82617 -14.48856 -14.34229 -14.08337 -13.99434 -13.52376 -13.27557 -13.25198 -13.17172 -12.64030 -12.45191 -12.35693 -12.26452 -12.13296 -12.06803 -11.71532 -11.54278 -11.45130 -11.18046 -11.09896 -11.06910 -11.05610 -10.80184 -10.57537 -10.00045 -9.84724 -9.47793 -9.08766 -8.97249 -8.93393 -8.27341 -6.52834 -6.23991 -3.94761 2.35046 2.63111 2.98965 3.03703 3.21739 3.25762 3.28905 3.65867 4.12729 4.18367 4.38664 4.47570 4.55084 4.61804 4.66299 4.81686 4.82895 4.97638 5.07514 5.10510 5.11243 5.13032 5.14715 5.20614 5.24377 5.30918 5.37125 5.43552 5.56935 5.61107 5.65788 5.67312 5.70525 5.78956 5.84725 5.87076 5.88183 5.95779 6.10323 6.11243 6.27464 6.59248 7.09606 7.57003 7.66361 7.89322 8.32658 8.56274 9.21320 10.83336 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.002072 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.866907 B =13508.323686 C =13899.506258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.516 3.484 5 O -0.545 6.545 6 N -0.609 5.609 7 C 0.108 3.892 8 C -0.147 4.147 9 C 0.146 3.854 10 H 0.093 0.907 11 N -0.736 5.736 12 C 0.534 3.466 13 O -0.517 6.517 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.136 4.136 25 C 0.142 3.858 26 H 0.103 0.897 27 C -0.165 4.165 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 -23.595 5.840 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.181 4.181 4 C 0.305 3.695 5 O -0.422 6.422 6 N -0.343 5.343 7 C -0.015 4.015 8 C -0.186 4.186 9 C 0.041 3.959 10 H 0.111 0.889 11 N -0.389 5.389 12 C 0.320 3.680 13 O -0.391 6.391 14 C -0.305 4.305 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.175 4.175 25 C 0.038 3.962 26 H 0.121 0.879 27 C -0.223 4.223 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.231 0.769 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.387 -23.097 7.634 25.731 hybrid contribution 1.038 -0.037 -2.667 2.862 sum -7.349 -23.134 4.968 24.776 Atomic orbital electron populations 1.21798 0.95420 1.01984 1.01872 1.21284 0.95306 0.94650 1.03473 1.21774 0.91800 1.00177 1.04383 1.20781 0.90398 0.83014 0.75341 1.90682 1.70484 1.30983 1.50081 1.48305 1.06613 1.06097 1.73275 1.21762 0.96749 0.83657 0.99339 1.22346 0.96624 1.01103 0.98545 1.20882 0.92755 0.89976 0.92265 0.88909 1.46091 1.67541 1.06183 1.19079 1.20318 0.77256 0.81719 0.88717 1.90692 1.45557 1.73040 1.29819 1.23540 1.03794 1.03685 0.99485 1.85370 1.84254 0.89783 1.23881 1.22826 1.49354 0.94184 1.02124 0.90990 1.24992 0.95063 0.96196 0.97317 1.70005 1.44366 1.05755 1.30144 0.86225 0.79383 0.78042 0.81855 1.19937 1.20796 1.19943 1.22218 1.01390 0.94761 0.99096 1.21091 0.79379 1.00986 0.94711 0.87907 1.22185 1.01762 1.01765 0.96624 0.92618 0.92407 0.92644 0.91306 0.91315 0.88852 0.88810 0.90637 0.89290 0.91294 0.89516 0.76867 0.89254 0.89266 0.92115 0.89818 0.90951 0.92208 0.91119 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.11 -0.78 5.22 -26.73 -0.14 -0.92 16 3 C -0.14 -0.95 4.05 -27.88 -0.11 -1.06 16 4 C 0.52 5.08 7.70 -10.99 -0.08 4.99 16 5 O -0.54 -7.28 15.39 5.56 0.09 -7.19 16 6 N -0.61 -5.33 2.68 -165.25 -0.44 -5.77 16 7 C 0.11 0.82 5.93 -3.71 -0.02 0.80 16 8 C -0.15 -1.39 5.65 -26.62 -0.15 -1.55 16 9 C 0.15 1.55 2.21 -67.85 -0.15 1.40 16 10 H 0.09 1.16 5.94 -51.93 -0.31 0.85 16 11 N -0.74 -9.04 5.08 -53.73 -0.27 -9.31 16 12 C 0.53 9.35 7.81 -10.99 -0.09 9.26 16 13 O -0.52 -10.99 15.52 5.56 0.09 -10.91 16 14 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 15 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 16 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 20 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.14 -1.15 5.03 -26.60 -0.13 -1.29 16 25 C 0.14 1.26 3.19 -67.63 -0.22 1.04 16 26 H 0.10 1.03 7.01 -51.93 -0.36 0.67 16 27 C -0.17 -1.37 9.03 37.15 0.34 -1.04 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.07 0.56 8.10 -51.92 -0.42 0.14 16 33 H 0.09 0.49 7.94 -51.93 -0.41 0.08 16 34 H 0.09 0.51 7.69 -51.93 -0.40 0.11 16 35 H 0.08 0.58 7.50 -51.93 -0.39 0.19 16 36 H 0.09 0.50 5.95 -51.93 -0.31 0.19 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.40 3.87 8.61 -40.82 -0.35 3.51 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.58 5.75 -51.93 -0.30 0.28 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -34.87 388.49 -9.03 -43.90 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.87 Total: 0.59 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 0.03 Total: -4.40 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.02 Total: -40.21 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.17 Total: -18.10 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.87 -9.03 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074840498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.261 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds