Wall clock time and date at job start Tue Mar 31 2020 15:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.50703 * 109.46912 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99985 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00161 * 180.02562 * 4 3 2 7 7 C 1.46926 * 120.62694 * 359.97438 * 6 4 3 8 8 C 1.53197 * 108.77484 * 126.37299 * 7 6 4 9 9 C 1.53038 * 109.30963 * 54.63204 * 8 7 6 10 10 H 1.09001 * 109.45987 * 58.66049 * 9 8 7 11 11 N 1.46507 * 109.45688 * 178.63012 * 9 8 7 12 12 C 1.34784 * 119.99875 * 275.00002 * 11 9 8 13 13 O 1.21277 * 119.99910 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99749 * 180.02562 * 12 11 9 15 15 S 1.80994 * 109.46675 * 180.02562 * 14 12 11 16 16 C 1.76204 * 99.99775 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99974 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.00265 * 180.02562 * 16 15 14 19 19 N 1.31638 * 119.99598 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00335 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47007 * 59.99750 * 20 18 16 22 22 H 1.48500 * 109.47273 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47167 * 300.00225 * 20 18 16 24 24 C 1.53037 * 109.53983 * 298.63302 * 9 8 7 25 25 C 1.46922 * 120.63244 * 179.72194 * 6 4 3 26 26 H 1.09003 * 109.58475 * 353.41435 * 25 6 4 27 27 C 1.52994 * 109.58687 * 113.84203 * 25 6 4 28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 30 30 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 31 31 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 32 32 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 34 34 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 35 35 H 1.09001 * 109.59151 * 246.15628 * 7 6 4 36 36 H 1.09003 * 109.59195 * 6.58462 * 7 6 4 37 37 H 1.09000 * 109.49544 * 174.58699 * 8 7 6 38 38 H 1.08997 * 109.49415 * 294.65077 * 8 7 6 39 39 H 0.96997 * 120.00190 * 95.00225 * 11 9 8 40 40 H 1.08999 * 109.46731 * 300.00234 * 14 12 11 41 41 H 1.08995 * 109.46658 * 59.99957 * 14 12 11 42 42 H 0.96997 * 119.99756 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.49623 * 181.31749 * 24 9 8 44 44 H 1.08993 * 109.50088 * 301.41801 * 24 9 8 45 45 H 1.09001 * 109.47641 * 59.99944 * 27 25 6 46 46 H 1.09007 * 109.46820 * 179.97438 * 27 25 6 47 47 H 1.09003 * 109.47165 * 299.99218 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0002 7 6 3.5003 3.8901 0.0003 8 6 4.0081 4.7412 1.1684 9 6 5.5295 4.8762 1.0724 10 1 5.7939 5.3345 0.1194 11 7 6.0150 5.7168 2.1697 12 6 6.0172 7.0585 2.0407 13 8 5.6176 7.5698 1.0161 14 6 6.5173 7.9231 3.1691 15 16 6.3930 9.6654 2.6948 16 6 7.0255 10.4254 4.1533 17 1 7.3433 9.8152 4.9858 18 6 7.1143 11.8083 4.2327 19 7 6.7263 12.5520 3.2182 20 14 7.7841 12.6140 5.7791 21 1 9.1751 12.1510 6.0156 22 1 7.7757 14.0895 5.6119 23 1 6.9347 12.2418 6.9389 24 6 6.1732 3.4911 1.1683 25 6 5.6900 2.6259 0.0053 26 1 6.0661 1.6100 0.1264 27 6 6.2014 3.2117 -1.3122 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.6827 4.4126 -0.9388 36 1 2.4320 3.7082 0.1180 37 1 3.5515 5.7300 1.1236 38 1 3.7437 4.2608 2.1104 39 1 6.3350 5.3079 2.9890 40 1 5.9129 7.7450 4.0586 41 1 7.5576 7.6773 3.3816 42 1 6.7887 13.5183 3.2735 43 1 7.2579 3.5902 1.1234 44 1 5.8890 3.0222 2.1103 45 1 5.8284 4.2295 -1.4265 46 1 7.2914 3.2233 -1.3059 47 1 5.8491 2.6001 -2.1429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074840500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:53 Heat of formation + Delta-G solvation = -117.013159 kcal Electronic energy + Delta-G solvation = -25760.695505 eV Core-core repulsion = 22067.805092 eV Total energy + Delta-G solvation = -3692.890413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67949 -40.55959 -38.74519 -35.73812 -35.40089 -34.57521 -33.58365 -32.65232 -30.44576 -28.85504 -28.46650 -27.64333 -25.08595 -24.00212 -22.96712 -21.68151 -21.32308 -19.96311 -19.36806 -18.42769 -17.80570 -17.28013 -16.91103 -16.87018 -16.69785 -16.36797 -15.95216 -15.51276 -15.21095 -15.02509 -14.85145 -14.71827 -14.51187 -14.27203 -13.96406 -13.76395 -13.51814 -13.18193 -13.15994 -13.04268 -12.87596 -12.86560 -12.76010 -12.61511 -12.44961 -12.21841 -12.10356 -11.90842 -11.75005 -11.62223 -11.39423 -11.12319 -10.92364 -10.77638 -10.26950 -10.08542 -9.72940 -8.64984 -8.34010 -6.11491 1.27703 1.43975 1.47205 1.56329 1.62099 1.63805 1.93877 2.26045 2.30800 3.00010 3.32274 3.44651 3.67445 3.76712 3.92168 3.97259 4.00029 4.07835 4.10889 4.12674 4.31294 4.33914 4.40808 4.46423 4.53055 4.58013 4.59418 4.69240 4.70896 4.77529 4.84577 4.90757 4.93667 4.96898 5.07270 5.11033 5.24239 5.28258 5.33279 5.42344 5.45664 5.50419 5.57029 6.20190 6.38230 6.52814 7.07426 7.15527 7.26805 8.74736 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026675 B = 0.002073 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.428142 B =13506.049123 C =13897.199420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.137 4.137 4 C 0.511 3.489 5 O -0.586 6.586 6 N -0.606 5.606 7 C 0.111 3.889 8 C -0.142 4.142 9 C 0.145 3.855 10 H 0.075 0.925 11 N -0.711 5.711 12 C 0.538 3.462 13 O -0.560 6.560 14 C -0.132 4.132 15 S -0.147 6.147 16 C -0.548 4.548 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 0.997 3.003 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.124 4.124 25 C 0.141 3.859 26 H 0.093 0.907 27 C -0.161 4.161 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.414 0.586 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.271 0.729 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 -24.683 -4.290 26.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.177 4.177 4 C 0.302 3.698 5 O -0.466 6.466 6 N -0.339 5.339 7 C -0.011 4.011 8 C -0.181 4.181 9 C 0.040 3.960 10 H 0.093 0.907 11 N -0.364 5.364 12 C 0.323 3.677 13 O -0.438 6.438 14 C -0.283 4.283 15 S 0.080 5.920 16 C -0.696 4.696 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.818 3.182 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.163 4.163 25 C 0.037 3.963 26 H 0.111 0.889 27 C -0.219 4.219 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.251 0.749 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.703 -24.226 -6.065 26.446 hybrid contribution 1.138 0.167 2.146 2.434 sum -7.565 -24.059 -3.920 25.523 Atomic orbital electron populations 1.21765 0.93839 1.02344 1.02672 1.21247 0.96588 0.94773 1.02007 1.21834 0.89358 1.00249 1.06230 1.21355 0.91650 0.82473 0.74364 1.90667 1.71516 1.32402 1.52053 1.48356 1.06578 1.06331 1.72588 1.21841 0.98046 0.82707 0.98551 1.22269 0.95367 1.00534 0.99932 1.21018 0.93916 0.90370 0.90694 0.90673 1.45849 1.65937 1.04412 1.20167 1.19987 0.77084 0.83121 0.87475 1.90686 1.47815 1.74148 1.31156 1.23390 1.05488 0.98641 1.00771 1.85522 1.84650 0.96324 1.25533 1.23178 1.49175 0.94871 1.02343 0.90010 1.26108 0.95161 0.96893 1.00959 1.70173 1.45785 1.06059 1.32642 0.85028 0.79040 0.76806 0.77285 1.18764 1.20426 1.18674 1.22059 1.01786 0.93049 0.99399 1.20997 0.79783 1.00413 0.95106 0.88932 1.22146 1.02243 1.01168 0.96310 0.92375 0.91831 0.91752 0.92828 0.92853 0.86805 0.86836 0.90544 0.86604 0.91470 0.90238 0.74902 0.87368 0.87451 0.92008 0.88877 0.90069 0.92204 0.90348 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.11 -1.43 5.22 30.59 0.16 -1.27 16 3 C -0.14 -1.54 4.05 29.85 0.12 -1.42 16 4 C 0.51 9.38 7.70 87.66 0.67 10.05 16 5 O -0.59 -15.52 15.39 -3.02 -0.05 -15.57 16 6 N -0.61 -9.60 2.68 -795.75 -2.14 -11.74 16 7 C 0.11 1.46 5.93 86.36 0.51 1.97 16 8 C -0.14 -2.44 5.65 30.67 0.17 -2.27 16 9 C 0.14 2.84 2.21 45.02 0.10 2.94 16 10 H 0.08 1.82 5.93 -2.39 -0.01 1.81 16 11 N -0.71 -16.10 5.08 -442.39 -2.25 -18.35 16 12 C 0.54 18.40 7.81 87.66 0.68 19.08 16 13 O -0.56 -24.13 15.52 -3.02 -0.05 -24.18 16 14 C -0.13 -4.98 6.16 71.24 0.44 -4.55 16 15 S -0.15 -7.98 20.57 -56.49 -1.16 -9.14 16 16 C -0.55 -30.80 9.50 67.96 0.65 -30.15 16 17 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 18 C 0.01 0.77 5.49 84.86 0.47 1.24 16 19 N -0.91 -55.24 13.22 21.65 0.29 -54.95 16 20 Si 1.00 43.02 29.55 68.60 2.03 45.04 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 24 C -0.12 -1.86 5.00 30.54 0.15 -1.71 16 25 C 0.14 2.33 3.19 44.84 0.14 2.47 16 26 H 0.09 1.80 7.01 -2.39 -0.02 1.78 16 27 C -0.16 -2.54 9.02 71.98 0.65 -1.89 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 32 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.11 0.84 7.94 -2.39 -0.02 0.82 16 34 H 0.11 0.86 7.69 -2.39 -0.02 0.84 16 35 H 0.08 1.04 7.51 -2.39 -0.02 1.03 16 36 H 0.12 0.92 5.93 -2.39 -0.01 0.91 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.41 6.81 8.60 -92.71 -0.80 6.02 16 40 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 41 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 42 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 45 H 0.06 1.02 5.73 -2.39 -0.01 1.01 16 46 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -78.23 388.42 2.47 -75.76 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.16 Total: 19.22 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 5.63 Total: -6.10 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -4.09 Total: -85.04 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -0.09 Total: -39.74 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.14 kcal Total: -78.23 2.47 -75.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074840500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.254 kcal (2) G-P(sol) polarization free energy of solvation -78.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds