Wall clock time and date at job start Tue Mar 31 2020 15:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46839 * 2 1 4 4 H 1.08998 * 115.56304 * 29.31003 * 3 2 1 5 5 C 1.53072 * 117.48982 * 243.59609 * 3 2 1 6 6 C 1.52992 * 59.98609 * 252.51227 * 5 3 2 7 7 H 1.09005 * 117.49643 * 107.50322 * 6 5 3 8 8 C 1.50696 * 117.50416 * 252.49830 * 6 5 3 9 9 O 1.21287 * 120.00121 * 68.74652 * 8 6 5 10 10 N 1.34777 * 120.00198 * 248.74999 * 8 6 5 11 11 C 1.46506 * 120.00033 * 180.02562 * 10 8 6 12 12 H 1.08998 * 109.46566 * 324.99334 * 11 10 8 13 13 C 1.52997 * 109.47289 * 84.99600 * 11 10 8 14 14 C 1.52992 * 109.46999 * 205.00067 * 11 10 8 15 15 C 1.52997 * 109.47448 * 64.99463 * 14 11 10 16 16 N 1.46500 * 109.47442 * 179.97438 * 15 14 11 17 17 C 1.34776 * 120.00522 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99731 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00242 * 180.02562 * 17 16 15 20 20 S 1.81000 * 109.47057 * 180.02562 * 19 17 16 21 21 C 1.76202 * 100.00029 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00089 * 359.97438 * 21 20 19 23 23 C 1.38797 * 119.99969 * 180.02562 * 21 20 19 24 24 N 1.31629 * 119.99902 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99942 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46849 * 59.99840 * 25 23 21 27 27 H 1.48497 * 109.47065 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47290 * 299.99902 * 25 23 21 29 29 H 1.09002 * 109.47534 * 300.00284 * 1 2 3 30 30 H 1.09001 * 109.47126 * 60.00766 * 1 2 3 31 31 H 1.09002 * 109.46976 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47369 * 239.99349 * 2 1 3 33 33 H 1.09001 * 109.47126 * 119.99234 * 2 1 3 34 34 H 1.09006 * 117.51117 * 145.03890 * 5 3 2 35 35 H 1.08998 * 117.51934 * 359.97438 * 5 3 2 36 36 H 0.96992 * 119.99904 * 359.97438 * 10 8 6 37 37 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.46832 * 60.00146 * 13 11 10 39 39 H 1.09004 * 109.47261 * 300.00128 * 13 11 10 40 40 H 1.09001 * 109.47563 * 184.99987 * 14 11 10 41 41 H 1.09004 * 109.47313 * 304.99643 * 14 11 10 42 42 H 1.09000 * 109.47346 * 300.00002 * 15 14 11 43 43 H 1.09007 * 109.46964 * 60.00529 * 15 14 11 44 44 H 0.97002 * 119.99959 * 0.02562 * 16 15 14 45 45 H 1.09000 * 109.46835 * 299.99911 * 19 17 16 46 46 H 1.08994 * 109.47068 * 59.99868 * 19 17 16 47 47 H 0.96999 * 119.99657 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1717 0.4814 5 6 2.8448 1.9074 -1.2162 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7721 0.1966 8 6 4.0227 2.8621 0.8914 9 8 3.2156 3.6160 1.3927 10 7 5.3423 3.1014 1.0257 11 6 5.8017 4.2717 1.7777 12 1 5.1086 5.0984 1.6223 13 6 5.8614 3.9293 3.2677 14 6 7.1947 4.6759 1.2911 15 6 7.1123 5.1374 -0.1653 16 7 8.4460 5.5250 -0.6311 17 6 8.6171 5.9680 -1.8924 18 8 7.6667 6.0462 -2.6417 19 6 9.9893 6.3662 -2.3717 20 16 9.8914 6.9137 -4.0941 21 6 11.5837 7.3077 -4.3865 22 1 12.3121 7.1784 -3.5996 23 6 11.9806 7.7852 -5.6279 24 7 11.0928 7.9432 -6.5868 25 14 13.7746 8.2036 -5.9377 26 1 14.6075 6.9906 -5.7367 27 1 13.9360 8.6890 -7.3318 28 1 14.2064 9.2630 -4.9911 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.7226 2.9426 -1.5351 35 1 3.0112 1.1856 -2.0159 36 1 5.9877 2.4983 0.6250 37 1 6.2036 4.7999 3.8272 38 1 6.5545 3.1025 3.4230 39 1 4.8689 3.6413 3.6144 40 1 7.5736 5.4898 1.9092 41 1 7.8672 3.8211 1.3638 42 1 6.7335 4.3235 -0.7835 43 1 6.4398 5.9923 -0.2380 44 1 9.2062 5.4628 -0.0317 45 1 10.3682 7.1798 -1.7531 46 1 10.6616 5.5114 -2.2994 47 1 11.3701 8.2773 -7.4542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075678285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:15 Heat of formation + Delta-G solvation = -77.171757 kcal Electronic energy + Delta-G solvation = -24581.450240 eV Core-core repulsion = 20890.287480 eV Total energy + Delta-G solvation = -3691.162760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44690 -39.21092 -37.86576 -36.46914 -34.43641 -32.55649 -32.43860 -31.73057 -30.08786 -28.14707 -25.51287 -25.23399 -24.10676 -23.30142 -21.42605 -20.88302 -20.44989 -20.20362 -17.89210 -17.58400 -16.74004 -16.22917 -15.99242 -15.43943 -15.36130 -15.11534 -14.81383 -14.61607 -14.53628 -14.06764 -13.96403 -13.76649 -13.24319 -13.03699 -12.88201 -12.74334 -12.59067 -12.46280 -12.37875 -12.19089 -11.69006 -11.65569 -11.55297 -11.39434 -11.27582 -11.05630 -11.04706 -10.77678 -10.63249 -10.40311 -10.01308 -9.83704 -9.47911 -9.35909 -9.07419 -8.90985 -8.25158 -6.51261 -6.22426 -3.93331 2.24520 2.79015 3.00780 3.08216 3.22604 3.26648 3.29871 3.49552 3.67305 4.19583 4.21876 4.39383 4.42918 4.49374 4.52730 4.71952 4.77893 4.82919 4.95801 5.05427 5.06552 5.07616 5.12596 5.21329 5.29461 5.34869 5.36873 5.44064 5.55155 5.59207 5.61682 5.63796 5.72233 5.75061 5.78391 5.84048 5.87916 5.92088 6.01769 6.11863 6.20685 6.57692 7.20643 7.58119 7.67704 7.97033 8.33943 8.59425 9.22638 10.84936 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.001879 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.068332 B =14895.340752 C =16116.276804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.146 4.146 6 C -0.195 4.195 7 H 0.122 0.878 8 C 0.546 3.454 9 O -0.540 6.540 10 N -0.722 5.722 11 C 0.145 3.855 12 H 0.092 0.908 13 C -0.162 4.162 14 C -0.139 4.139 15 C 0.121 3.879 16 N -0.740 5.740 17 C 0.530 3.470 18 O -0.517 6.517 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.402 0.598 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.250 -15.743 19.593 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.137 4.137 4 H 0.136 0.864 5 C -0.184 4.184 6 C -0.216 4.216 7 H 0.140 0.860 8 C 0.333 3.667 9 O -0.417 6.417 10 N -0.374 5.374 11 C 0.040 3.960 12 H 0.110 0.890 13 C -0.220 4.220 14 C -0.178 4.178 15 C -0.003 4.003 16 N -0.395 5.395 17 C 0.316 3.684 18 O -0.391 6.391 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.236 0.764 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.231 0.769 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.465 -14.992 18.507 28.398 hybrid contribution 3.154 -0.143 0.800 3.257 sum -12.311 -15.135 19.307 27.448 Atomic orbital electron populations 1.21742 0.95121 1.01661 1.02223 1.21157 0.96351 0.93605 1.02122 1.22498 0.91135 0.98731 1.01306 0.86439 1.23151 1.01466 1.03562 0.90184 1.22308 0.97857 0.98842 1.02562 0.85975 1.19673 0.82169 0.85512 0.79371 1.90697 1.53930 1.48522 1.48566 1.46043 1.07127 1.28525 1.55719 1.20891 0.95262 0.88738 0.91088 0.88962 1.22162 1.02603 1.02121 0.95128 1.22123 0.96705 1.02568 0.96354 1.21255 0.85162 1.00413 0.93483 1.46003 1.10193 1.69314 1.14009 1.20326 0.90970 0.76126 0.80933 1.90710 1.42276 1.51801 1.54281 1.23531 0.95850 1.04297 1.06731 1.85412 1.12732 1.83849 1.01362 1.22829 0.93508 1.51097 1.01080 0.90977 1.24992 0.98704 0.94871 0.94991 1.70008 1.33857 1.42801 1.03598 0.86221 0.82910 0.78843 0.77505 1.19950 1.20797 1.19937 0.92529 0.92406 0.92612 0.91568 0.91518 0.88035 0.87618 0.76386 0.91396 0.92369 0.91930 0.89423 0.90534 0.91592 0.91590 0.76856 0.89229 0.89246 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.87 37.16 0.37 -0.49 16 2 C -0.09 -0.57 6.22 -26.73 -0.17 -0.74 16 3 C -0.12 -0.93 5.25 -90.58 -0.48 -1.41 16 4 H 0.12 1.13 7.60 -51.93 -0.39 0.74 16 5 C -0.15 -1.16 9.88 -26.70 -0.26 -1.42 16 6 C -0.19 -1.54 5.91 -91.78 -0.54 -2.08 16 7 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 8 C 0.55 5.57 7.58 -10.99 -0.08 5.49 16 9 O -0.54 -7.51 15.92 5.55 0.09 -7.42 16 10 N -0.72 -5.71 4.53 -53.81 -0.24 -5.96 16 11 C 0.15 1.14 2.57 -67.93 -0.17 0.97 16 12 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 13 C -0.16 -1.11 9.48 37.16 0.35 -0.76 16 14 C -0.14 -0.95 4.87 -26.74 -0.13 -1.08 16 15 C 0.12 1.33 5.56 -4.04 -0.02 1.30 16 16 N -0.74 -9.32 5.56 -60.29 -0.33 -9.66 16 17 C 0.53 9.76 7.85 -10.99 -0.09 9.68 16 18 O -0.52 -11.77 15.86 5.56 0.09 -11.68 16 19 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 25 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.36 7.88 -51.93 -0.41 -0.05 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.11 0.68 8.03 -51.93 -0.42 0.26 16 36 H 0.40 2.36 8.60 -40.82 -0.35 2.00 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.79 7.75 -51.93 -0.40 0.38 16 43 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 44 H 0.40 3.71 8.47 -40.82 -0.35 3.37 16 45 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 46 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 47 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 408.74 15.07 6.16 6.16 Total: -1.00 -36.39 408.74 -9.73 -46.12 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.18 Total: 1.71 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.81 Total: -6.31 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.16 Total: -41.00 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.18 Total: -19.10 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.39 -9.73 -46.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.052 kcal (2) G-P(sol) polarization free energy of solvation -36.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds