Wall clock time and date at job start Tue Mar 31 2020 15:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46839 * 2 1 4 4 H 1.08998 * 115.56304 * 29.31003 * 3 2 1 5 5 C 1.53072 * 117.48982 * 243.59609 * 3 2 1 6 6 C 1.52992 * 59.98609 * 252.51227 * 5 3 2 7 7 H 1.09005 * 117.49643 * 107.50322 * 6 5 3 8 8 C 1.50696 * 117.50416 * 252.49830 * 6 5 3 9 9 O 1.21287 * 120.00121 * 68.74652 * 8 6 5 10 10 N 1.34777 * 120.00198 * 248.74999 * 8 6 5 11 11 C 1.46506 * 120.00033 * 180.02562 * 10 8 6 12 12 H 1.08998 * 109.46566 * 324.99334 * 11 10 8 13 13 C 1.52997 * 109.47289 * 84.99600 * 11 10 8 14 14 C 1.52992 * 109.46999 * 205.00067 * 11 10 8 15 15 C 1.52997 * 109.47448 * 64.99463 * 14 11 10 16 16 N 1.46500 * 109.47442 * 179.97438 * 15 14 11 17 17 C 1.34776 * 120.00522 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99731 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00242 * 180.02562 * 17 16 15 20 20 S 1.81000 * 109.47057 * 180.02562 * 19 17 16 21 21 C 1.76202 * 100.00029 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00089 * 359.97438 * 21 20 19 23 23 C 1.38797 * 119.99969 * 180.02562 * 21 20 19 24 24 N 1.31629 * 119.99902 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99942 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46849 * 59.99840 * 25 23 21 27 27 H 1.48497 * 109.47065 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47290 * 299.99902 * 25 23 21 29 29 H 1.09002 * 109.47534 * 300.00284 * 1 2 3 30 30 H 1.09001 * 109.47126 * 60.00766 * 1 2 3 31 31 H 1.09002 * 109.46976 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47369 * 239.99349 * 2 1 3 33 33 H 1.09001 * 109.47126 * 119.99234 * 2 1 3 34 34 H 1.09006 * 117.51117 * 145.03890 * 5 3 2 35 35 H 1.08998 * 117.51934 * 359.97438 * 5 3 2 36 36 H 0.96992 * 119.99904 * 359.97438 * 10 8 6 37 37 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.46832 * 60.00146 * 13 11 10 39 39 H 1.09004 * 109.47261 * 300.00128 * 13 11 10 40 40 H 1.09001 * 109.47563 * 184.99987 * 14 11 10 41 41 H 1.09004 * 109.47313 * 304.99643 * 14 11 10 42 42 H 1.09000 * 109.47346 * 300.00002 * 15 14 11 43 43 H 1.09007 * 109.46964 * 60.00529 * 15 14 11 44 44 H 0.97002 * 119.99959 * 0.02562 * 16 15 14 45 45 H 1.09000 * 109.46835 * 299.99911 * 19 17 16 46 46 H 1.08994 * 109.47068 * 59.99868 * 19 17 16 47 47 H 0.96999 * 119.99657 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1717 0.4814 5 6 2.8448 1.9074 -1.2162 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7721 0.1966 8 6 4.0227 2.8621 0.8914 9 8 3.2156 3.6160 1.3927 10 7 5.3423 3.1014 1.0257 11 6 5.8017 4.2717 1.7777 12 1 5.1086 5.0984 1.6223 13 6 5.8614 3.9293 3.2677 14 6 7.1947 4.6759 1.2911 15 6 7.1123 5.1374 -0.1653 16 7 8.4460 5.5250 -0.6311 17 6 8.6171 5.9680 -1.8924 18 8 7.6667 6.0462 -2.6417 19 6 9.9893 6.3662 -2.3717 20 16 9.8914 6.9137 -4.0941 21 6 11.5837 7.3077 -4.3865 22 1 12.3121 7.1784 -3.5996 23 6 11.9806 7.7852 -5.6279 24 7 11.0928 7.9432 -6.5868 25 14 13.7746 8.2036 -5.9377 26 1 14.6075 6.9906 -5.7367 27 1 13.9360 8.6890 -7.3318 28 1 14.2064 9.2630 -4.9911 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.7226 2.9426 -1.5351 35 1 3.0112 1.1856 -2.0159 36 1 5.9877 2.4983 0.6250 37 1 6.2036 4.7999 3.8272 38 1 6.5545 3.1025 3.4230 39 1 4.8689 3.6413 3.6144 40 1 7.5736 5.4898 1.9092 41 1 7.8672 3.8211 1.3638 42 1 6.7335 4.3235 -0.7835 43 1 6.4398 5.9923 -0.2380 44 1 9.2062 5.4628 -0.0317 45 1 10.3682 7.1798 -1.7531 46 1 10.6616 5.5114 -2.2994 47 1 11.3701 8.2773 -7.4542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075678285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:14 Heat of formation + Delta-G solvation = -102.565537 kcal Electronic energy + Delta-G solvation = -24582.551397 eV Core-core repulsion = 20890.287480 eV Total energy + Delta-G solvation = -3692.263917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.22737 -40.58124 -38.56233 -37.32958 -35.58523 -34.57877 -33.18204 -32.52048 -31.28981 -29.22024 -27.64610 -25.92275 -24.67962 -24.16853 -22.20137 -21.65511 -21.47603 -21.03095 -19.82737 -18.37244 -17.79415 -17.42511 -17.20085 -16.87140 -16.64418 -16.13706 -15.85438 -15.72267 -15.37815 -15.18906 -14.96352 -14.78167 -14.46469 -14.43357 -13.69331 -13.55912 -13.54165 -13.34387 -13.16501 -13.03396 -13.00595 -12.86104 -12.66244 -12.45577 -12.41146 -12.19689 -11.95576 -11.94145 -11.73543 -11.26208 -11.12298 -11.05549 -10.97554 -10.76023 -10.27154 -10.20668 -10.06050 -8.66640 -8.33921 -6.12425 1.27530 1.44647 1.46610 1.47744 1.57262 1.61197 2.12531 2.25720 2.29723 2.84744 3.00211 3.32371 3.60716 3.72836 3.77371 3.81638 3.85409 4.03132 4.06779 4.17516 4.26560 4.31247 4.41251 4.47017 4.47252 4.52012 4.55659 4.60858 4.77393 4.80114 4.87218 4.91663 4.96822 5.02834 5.12076 5.14113 5.20231 5.28720 5.29364 5.41872 5.42669 5.47564 5.53653 6.20122 6.51386 6.53912 7.07205 7.23845 7.25842 8.75023 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.001879 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.068332 B =14895.340752 C =16116.276804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.120 4.120 4 H 0.093 0.907 5 C -0.148 4.148 6 C -0.191 4.191 7 H 0.152 0.848 8 C 0.538 3.462 9 O -0.586 6.586 10 N -0.712 5.712 11 C 0.144 3.856 12 H 0.064 0.936 13 C -0.154 4.154 14 C -0.121 4.121 15 C 0.120 3.880 16 N -0.710 5.710 17 C 0.531 3.469 18 O -0.569 6.569 19 C -0.129 4.129 20 S -0.156 6.156 21 C -0.547 4.547 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.261 1.261 27 H -0.280 1.280 28 H -0.262 1.262 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.415 0.585 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.419 0.581 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.633 -17.392 21.549 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.127 4.127 3 C -0.139 4.139 4 H 0.111 0.889 5 C -0.186 4.186 6 C -0.212 4.212 7 H 0.169 0.831 8 C 0.325 3.675 9 O -0.467 6.467 10 N -0.363 5.363 11 C 0.039 3.961 12 H 0.082 0.918 13 C -0.212 4.212 14 C -0.159 4.159 15 C -0.003 4.003 16 N -0.364 5.364 17 C 0.317 3.683 18 O -0.448 6.448 19 C -0.280 4.280 20 S 0.071 5.929 21 C -0.695 4.695 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.185 1.185 27 H -0.205 1.205 28 H -0.187 1.187 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.144 0.856 36 H 0.252 0.748 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.257 0.743 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.799 -16.674 20.528 29.381 hybrid contribution 2.264 0.359 0.304 2.313 sum -10.535 -16.315 20.832 28.480 Atomic orbital electron populations 1.21754 0.95126 1.02277 1.01709 1.21154 0.96335 0.92138 1.03045 1.22479 0.90979 0.99472 1.00998 0.88923 1.23168 1.01723 1.02916 0.90768 1.22415 0.98201 0.98768 1.01831 0.83070 1.20145 0.82526 0.85738 0.79054 1.90676 1.55185 1.50196 1.50612 1.46011 1.06731 1.28536 1.55062 1.20896 0.95190 0.87935 0.92119 0.91793 1.22086 1.01855 1.03377 0.93895 1.22032 0.96445 1.04240 0.93188 1.21356 0.83564 0.99313 0.96111 1.45692 1.11806 1.66812 1.12114 1.20128 0.89660 0.76240 0.82313 1.90703 1.43460 1.54414 1.56194 1.23370 0.97564 1.05643 1.01401 1.85626 1.13994 1.84825 1.08427 1.23183 0.93519 1.51008 1.01759 0.89756 1.26141 1.04006 0.94442 0.94600 1.70183 1.36514 1.43946 1.04182 0.84997 0.76312 0.79127 0.77515 1.18542 1.20516 1.18661 0.93231 0.92826 0.91368 0.90288 0.90797 0.90194 0.85617 0.74847 0.90053 0.90494 0.94144 0.87467 0.87632 0.92452 0.93820 0.74300 0.87144 0.86886 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.87 71.98 0.71 -0.94 16 2 C -0.09 -0.98 6.22 30.59 0.19 -0.79 16 3 C -0.12 -1.92 5.25 -10.77 -0.06 -1.98 16 4 H 0.09 1.95 7.60 -2.39 -0.02 1.94 16 5 C -0.15 -2.35 9.88 30.62 0.30 -2.05 16 6 C -0.19 -2.89 5.91 -11.54 -0.07 -2.96 16 7 H 0.15 1.36 8.14 -2.38 -0.02 1.34 16 8 C 0.54 11.09 7.58 87.66 0.66 11.75 16 9 O -0.59 -17.26 15.92 -3.05 -0.05 -17.31 16 10 N -0.71 -10.47 4.53 -442.54 -2.00 -12.48 16 11 C 0.14 2.07 2.57 44.99 0.12 2.19 16 12 H 0.06 1.32 7.58 -2.39 -0.02 1.30 16 13 C -0.15 -1.81 9.48 71.98 0.68 -1.12 16 14 C -0.12 -1.28 4.87 30.59 0.15 -1.13 16 15 C 0.12 2.45 5.56 86.38 0.48 2.93 16 16 N -0.71 -16.08 5.56 -463.05 -2.57 -18.65 16 17 C 0.53 19.01 7.85 87.66 0.69 19.70 16 18 O -0.57 -26.46 15.86 -3.04 -0.05 -26.51 16 19 C -0.13 -4.92 6.16 71.24 0.44 -4.49 16 20 S -0.16 -8.61 20.57 -56.49 -1.16 -9.77 16 21 C -0.55 -30.93 9.50 67.95 0.65 -30.29 16 22 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 23 C 0.01 0.73 5.49 84.86 0.47 1.19 16 24 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 25 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 26 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 27 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 28 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.68 7.88 -2.39 -0.02 0.66 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.13 1.46 8.03 -2.39 -0.02 1.44 16 36 H 0.41 3.90 8.60 -92.71 -0.80 3.10 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.06 1.31 7.75 -2.39 -0.02 1.29 16 43 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.42 6.05 8.47 -92.71 -0.79 5.27 16 45 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 46 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 47 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -84.08 408.74 1.27 -82.82 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.62 Total: 20.40 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 5.41 Total: -7.97 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -4.29 Total: -86.79 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.10 Total: -43.82 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -84.08 1.27 -82.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.747 kcal (2) G-P(sol) polarization free energy of solvation -84.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds