Wall clock time and date at job start Tue Mar 31 2020 15:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08999 * 115.55057 * 29.32912 * 3 2 1 5 5 C 1.53000 * 117.49595 * 243.62173 * 3 2 1 6 6 C 1.53001 * 117.49909 * 174.99848 * 3 2 1 7 7 H 1.09006 * 117.49931 * 359.97438 * 6 3 2 8 8 C 1.50695 * 117.50118 * 215.00090 * 6 3 2 9 9 O 1.21289 * 119.99566 * 359.97438 * 8 6 3 10 10 N 1.34772 * 120.00228 * 180.02562 * 8 6 3 11 11 C 1.46502 * 119.99855 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47225 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47643 * 179.97438 * 12 11 10 14 14 H 1.09010 * 109.46852 * 304.99697 * 13 12 11 15 15 C 1.52999 * 109.47429 * 185.00029 * 13 12 11 16 16 N 1.46494 * 109.47293 * 64.99284 * 13 12 11 17 17 C 1.34777 * 120.00522 * 205.00393 * 16 13 12 18 18 O 1.21276 * 119.99414 * 0.02562 * 17 16 13 19 19 C 1.50695 * 120.00231 * 180.02562 * 17 16 13 20 20 S 1.80993 * 109.47287 * 179.97438 * 19 17 16 21 21 C 1.76201 * 100.00356 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99819 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00240 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99959 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99855 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47409 * 60.00029 * 25 23 21 27 27 H 1.48504 * 109.46868 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46948 * 299.99572 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.08997 * 117.50123 * 359.97438 * 5 3 2 35 35 H 1.09001 * 117.49715 * 145.02400 * 5 3 2 36 36 H 0.96992 * 120.00317 * 359.97438 * 10 8 6 37 37 H 1.09003 * 109.46742 * 299.99182 * 11 10 8 38 38 H 1.08997 * 109.48013 * 59.99520 * 11 10 8 39 39 H 1.08999 * 109.46948 * 300.00045 * 12 11 10 40 40 H 1.09006 * 109.47402 * 59.99307 * 12 11 10 41 41 H 1.08998 * 109.46915 * 179.97438 * 15 13 12 42 42 H 1.08993 * 109.46678 * 299.99560 * 15 13 12 43 43 H 1.08998 * 109.47358 * 59.99498 * 15 13 12 44 44 H 0.97003 * 119.99901 * 25.00534 * 16 13 12 45 45 H 1.09004 * 109.47197 * 300.00145 * 19 17 16 46 46 H 1.09007 * 109.47400 * 59.99793 * 19 17 16 47 47 H 0.97002 * 119.99906 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3884 2.1716 0.4817 5 6 2.8440 1.9075 -1.2159 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1966 8 6 4.0228 2.8617 0.8918 9 8 3.2157 3.6165 1.3918 10 7 5.3424 3.1002 1.0272 11 6 5.8019 4.2702 1.7797 12 6 7.3314 4.3069 1.7817 13 6 7.8114 5.5291 2.5670 14 1 7.3556 6.4287 2.1531 15 6 9.3342 5.6354 2.4645 16 7 7.4251 5.3886 3.9731 17 6 7.2710 6.4845 4.7424 18 8 7.4517 7.5869 4.2704 19 6 6.8742 6.3399 6.1890 20 16 6.7502 7.9786 6.9473 21 6 6.2860 7.5237 8.5850 22 1 6.1657 6.4817 8.8424 23 6 6.0748 8.5044 9.5443 24 7 6.2219 9.7743 9.2307 25 14 5.5833 8.0220 11.2807 26 1 6.6391 7.1620 11.8732 27 1 5.4204 9.2451 12.1069 28 1 4.3003 7.2753 11.2426 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.0099 1.1857 -2.0155 35 1 2.7213 2.9427 -1.5344 36 1 5.9878 2.4969 0.6271 37 1 5.4170 5.1767 1.3124 38 1 5.4389 4.2081 2.8056 39 1 7.7159 3.4003 2.2491 40 1 7.6948 4.3689 0.7559 41 1 9.6760 6.5065 3.0236 42 1 9.7898 4.7359 2.8783 43 1 9.6216 5.7400 1.4183 44 1 7.2803 4.5069 4.3505 45 1 5.9099 5.8358 6.2526 46 1 7.6267 5.7524 6.7152 47 1 6.0739 10.4597 9.9010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078647766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:59 Heat of formation + Delta-G solvation = -76.388724 kcal Electronic energy + Delta-G solvation = -24573.430486 eV Core-core repulsion = 20882.301681 eV Total energy + Delta-G solvation = -3691.128805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.34778 -39.43139 -37.64210 -36.47469 -34.63139 -32.49470 -32.40313 -31.79687 -29.51648 -28.46360 -25.47508 -25.34935 -24.19522 -22.93118 -21.60710 -20.95239 -20.36726 -20.21270 -17.87375 -17.56185 -16.59977 -16.41662 -16.00134 -15.51250 -15.19164 -15.02315 -14.84229 -14.77805 -14.43386 -14.21422 -13.75956 -13.61726 -13.22842 -12.96292 -12.89596 -12.84829 -12.62487 -12.52993 -12.14451 -11.93509 -11.76572 -11.75690 -11.53834 -11.44074 -11.09024 -11.01922 -11.01283 -10.74457 -10.70834 -10.46404 -10.05255 -9.79921 -9.37668 -9.36276 -9.03954 -8.90193 -8.21375 -6.47053 -6.18984 -3.89351 2.21971 2.77657 3.05067 3.11680 3.25615 3.29368 3.33109 3.41903 3.72988 4.16206 4.23069 4.32776 4.36693 4.45941 4.61973 4.73895 4.75477 4.78208 4.91792 5.01349 5.15971 5.17201 5.22303 5.22668 5.31186 5.32873 5.38290 5.47910 5.55852 5.57452 5.61824 5.68053 5.68369 5.74583 5.76699 5.91632 5.97075 6.00541 6.12575 6.16029 6.18022 6.66322 7.18559 7.61780 7.71569 7.96576 8.37593 8.63506 9.26159 10.88375 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.002122 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.404006 B =13190.457913 C =15124.380215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.117 4.117 4 H 0.119 0.881 5 C -0.149 4.149 6 C -0.193 4.193 7 H 0.123 0.877 8 C 0.539 3.461 9 O -0.534 6.534 10 N -0.728 5.728 11 C 0.116 3.884 12 C -0.137 4.137 13 C 0.147 3.853 14 H 0.091 0.909 15 C -0.162 4.162 16 N -0.736 5.736 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.400 0.600 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.397 0.603 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.513 -22.454 -22.592 31.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.136 4.136 4 H 0.137 0.863 5 C -0.186 4.186 6 C -0.214 4.214 7 H 0.141 0.859 8 C 0.325 3.675 9 O -0.410 6.410 10 N -0.380 5.380 11 C -0.007 4.007 12 C -0.175 4.175 13 C 0.041 3.959 14 H 0.109 0.891 15 C -0.221 4.221 16 N -0.391 5.391 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.234 0.766 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.231 0.769 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.799 -19.834 -22.948 30.384 hybrid contribution -0.080 -2.325 1.713 2.890 sum -1.879 -22.159 -21.234 30.748 Atomic orbital electron populations 1.21747 0.95047 1.01720 1.02303 1.21158 0.96445 0.93501 1.02109 1.22510 0.91270 0.98886 1.00934 0.86299 1.23113 1.02025 1.03240 0.90232 1.22303 0.98008 0.98844 1.02232 0.85949 1.19699 0.82227 0.85661 0.79907 1.90753 1.53854 1.48436 1.47992 1.45928 1.07044 1.28838 1.56157 1.21428 0.93850 0.88262 0.97184 1.22101 0.94535 0.99142 1.01712 1.20775 0.95246 0.98271 0.81621 0.89076 1.22170 0.95094 1.02792 1.02042 1.46127 1.72845 1.09358 1.10741 1.20294 0.75876 0.84031 0.87787 1.90697 1.48758 1.25473 1.74109 1.23539 1.04120 1.08325 0.94518 1.85377 1.90310 0.99542 1.08056 1.22829 1.54293 0.95537 0.95743 0.91004 1.24991 0.94902 0.94474 0.99229 1.70009 1.46047 0.99451 1.34787 0.86226 0.79099 0.77980 0.82206 1.19965 1.20816 1.19931 0.92567 0.92486 0.92351 0.91371 0.91685 0.87772 0.88243 0.76624 0.91112 0.90857 0.90635 0.89759 0.91418 0.92543 0.91884 0.76939 0.89245 0.89284 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.87 37.16 0.37 -0.47 16 2 C -0.09 -0.53 6.22 -26.73 -0.17 -0.70 16 3 C -0.12 -0.88 5.25 -90.62 -0.48 -1.35 16 4 H 0.12 1.16 7.60 -51.93 -0.39 0.76 16 5 C -0.15 -0.92 9.88 -26.73 -0.26 -1.19 16 6 C -0.19 -1.38 5.91 -91.77 -0.54 -1.92 16 7 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 8 C 0.54 5.66 7.61 -10.99 -0.08 5.57 16 9 O -0.53 -8.23 16.26 5.55 0.09 -8.14 16 10 N -0.73 -5.73 5.56 -60.29 -0.33 -6.07 16 11 C 0.12 1.10 5.56 -4.04 -0.02 1.07 16 12 C -0.14 -0.95 4.87 -26.73 -0.13 -1.08 16 13 C 0.15 1.56 2.57 -67.94 -0.17 1.39 16 14 H 0.09 1.18 7.58 -51.92 -0.39 0.79 16 15 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 16 N -0.74 -9.42 4.53 -53.81 -0.24 -9.66 16 17 C 0.53 9.89 7.81 -10.99 -0.09 9.81 16 18 O -0.52 -11.64 15.52 5.56 0.09 -11.55 16 19 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.54 -15.49 9.50 30.94 0.29 -15.19 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 25 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.29 7.87 -51.93 -0.41 -0.12 16 34 H 0.10 0.43 8.03 -51.93 -0.42 0.02 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 1.81 8.47 -40.82 -0.35 1.46 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.40 4.01 8.60 -40.82 -0.35 3.66 16 45 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 46 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 47 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 408.74 15.07 6.16 6.16 Total: -1.00 -37.20 408.74 -9.73 -46.92 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -8.18 Total: 1.48 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -0.81 Total: -6.24 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.16 Total: -41.48 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.18 Total: -19.69 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.20 -9.73 -46.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078647766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.466 kcal (2) G-P(sol) polarization free energy of solvation -37.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds