Wall clock time and date at job start Tue Mar 31 2020 15:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08999 * 115.55057 * 29.32912 * 3 2 1 5 5 C 1.53000 * 117.49595 * 243.62173 * 3 2 1 6 6 C 1.53001 * 117.49909 * 174.99848 * 3 2 1 7 7 H 1.09006 * 117.49931 * 359.97438 * 6 3 2 8 8 C 1.50695 * 117.50118 * 215.00090 * 6 3 2 9 9 O 1.21289 * 119.99566 * 359.97438 * 8 6 3 10 10 N 1.34772 * 120.00228 * 180.02562 * 8 6 3 11 11 C 1.46502 * 119.99855 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47225 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47643 * 179.97438 * 12 11 10 14 14 H 1.09010 * 109.46852 * 304.99697 * 13 12 11 15 15 C 1.52999 * 109.47429 * 185.00029 * 13 12 11 16 16 N 1.46494 * 109.47293 * 64.99284 * 13 12 11 17 17 C 1.34777 * 120.00522 * 205.00393 * 16 13 12 18 18 O 1.21276 * 119.99414 * 0.02562 * 17 16 13 19 19 C 1.50695 * 120.00231 * 180.02562 * 17 16 13 20 20 S 1.80993 * 109.47287 * 179.97438 * 19 17 16 21 21 C 1.76201 * 100.00356 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99819 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00240 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99959 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99855 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47409 * 60.00029 * 25 23 21 27 27 H 1.48504 * 109.46868 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46948 * 299.99572 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.08997 * 117.50123 * 359.97438 * 5 3 2 35 35 H 1.09001 * 117.49715 * 145.02400 * 5 3 2 36 36 H 0.96992 * 120.00317 * 359.97438 * 10 8 6 37 37 H 1.09003 * 109.46742 * 299.99182 * 11 10 8 38 38 H 1.08997 * 109.48013 * 59.99520 * 11 10 8 39 39 H 1.08999 * 109.46948 * 300.00045 * 12 11 10 40 40 H 1.09006 * 109.47402 * 59.99307 * 12 11 10 41 41 H 1.08998 * 109.46915 * 179.97438 * 15 13 12 42 42 H 1.08993 * 109.46678 * 299.99560 * 15 13 12 43 43 H 1.08998 * 109.47358 * 59.99498 * 15 13 12 44 44 H 0.97003 * 119.99901 * 25.00534 * 16 13 12 45 45 H 1.09004 * 109.47197 * 300.00145 * 19 17 16 46 46 H 1.09007 * 109.47400 * 59.99793 * 19 17 16 47 47 H 0.97002 * 119.99906 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3884 2.1716 0.4817 5 6 2.8440 1.9075 -1.2159 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1966 8 6 4.0228 2.8617 0.8918 9 8 3.2157 3.6165 1.3918 10 7 5.3424 3.1002 1.0272 11 6 5.8019 4.2702 1.7797 12 6 7.3314 4.3069 1.7817 13 6 7.8114 5.5291 2.5670 14 1 7.3556 6.4287 2.1531 15 6 9.3342 5.6354 2.4645 16 7 7.4251 5.3886 3.9731 17 6 7.2710 6.4845 4.7424 18 8 7.4517 7.5869 4.2704 19 6 6.8742 6.3399 6.1890 20 16 6.7502 7.9786 6.9473 21 6 6.2860 7.5237 8.5850 22 1 6.1657 6.4817 8.8424 23 6 6.0748 8.5044 9.5443 24 7 6.2219 9.7743 9.2307 25 14 5.5833 8.0220 11.2807 26 1 6.6391 7.1620 11.8732 27 1 5.4204 9.2451 12.1069 28 1 4.3003 7.2753 11.2426 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.0099 1.1857 -2.0155 35 1 2.7213 2.9427 -1.5344 36 1 5.9878 2.4969 0.6271 37 1 5.4170 5.1767 1.3124 38 1 5.4389 4.2081 2.8056 39 1 7.7159 3.4003 2.2491 40 1 7.6948 4.3689 0.7559 41 1 9.6760 6.5065 3.0236 42 1 9.7898 4.7359 2.8783 43 1 9.6216 5.7400 1.4183 44 1 7.2803 4.5069 4.3505 45 1 5.9099 5.8358 6.2526 46 1 7.6267 5.7524 6.7152 47 1 6.0739 10.4597 9.9010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078647766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:58 Heat of formation + Delta-G solvation = -103.087004 kcal Electronic energy + Delta-G solvation = -24574.588210 eV Core-core repulsion = 20882.301681 eV Total energy + Delta-G solvation = -3692.286530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16078 -40.73797 -38.32800 -37.48882 -35.61860 -34.60022 -33.15118 -32.83397 -30.55236 -29.72966 -27.67293 -26.04918 -24.68393 -23.69831 -22.56622 -21.68591 -21.46921 -20.96035 -19.84580 -18.34711 -17.93712 -17.42189 -16.99442 -16.89133 -16.49551 -16.38664 -15.93716 -15.73658 -15.47301 -15.09390 -14.82976 -14.80006 -14.47504 -14.40373 -13.99244 -13.54661 -13.39126 -13.32496 -13.18926 -13.03501 -12.99467 -12.88029 -12.62922 -12.47910 -12.42930 -12.19082 -11.93828 -11.92611 -11.74959 -11.27177 -11.14464 -11.06630 -10.92630 -10.79193 -10.30072 -10.21826 -10.07179 -8.68311 -8.35929 -6.14269 1.25605 1.42505 1.44569 1.45397 1.55541 1.62041 2.07805 2.25299 2.30716 2.84828 2.97810 3.30852 3.59508 3.72945 3.75569 3.84198 3.90128 4.00349 4.07809 4.19525 4.27182 4.28028 4.41831 4.46933 4.48280 4.48940 4.56242 4.62758 4.77925 4.81516 4.87743 4.93471 4.98688 5.03382 5.13362 5.14973 5.22331 5.29079 5.33131 5.38942 5.39667 5.49307 5.55462 6.17962 6.50728 6.54055 7.04887 7.24375 7.26235 8.73072 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.002122 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.404006 B =13190.457913 C =15124.380215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 C -0.133 4.133 4 H 0.084 0.916 5 C -0.134 4.134 6 C -0.188 4.188 7 H 0.158 0.842 8 C 0.529 3.471 9 O -0.595 6.595 10 N -0.708 5.708 11 C 0.117 3.883 12 C -0.116 4.116 13 C 0.141 3.859 14 H 0.062 0.938 15 C -0.156 4.156 16 N -0.710 5.710 17 C 0.534 3.466 18 O -0.565 6.565 19 C -0.131 4.131 20 S -0.151 6.151 21 C -0.548 4.548 22 H 0.082 0.918 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.260 1.260 27 H -0.278 1.278 28 H -0.264 1.264 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.421 0.579 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.029 0.971 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.414 0.586 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 -26.666 -23.570 35.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 C -0.151 4.151 4 H 0.103 0.897 5 C -0.172 4.172 6 C -0.209 4.209 7 H 0.175 0.825 8 C 0.318 3.682 9 O -0.476 6.476 10 N -0.360 5.360 11 C -0.007 4.007 12 C -0.154 4.154 13 C 0.036 3.964 14 H 0.081 0.919 15 C -0.215 4.215 16 N -0.364 5.364 17 C 0.320 3.680 18 O -0.443 6.443 19 C -0.283 4.283 20 S 0.076 5.924 21 C -0.696 4.696 22 H 0.100 0.900 23 C -0.193 4.193 24 N -0.547 5.547 25 Si 0.821 3.179 26 H -0.185 1.185 27 H -0.203 1.203 28 H -0.188 1.188 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.102 0.898 36 H 0.259 0.741 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.049 0.951 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.251 0.749 45 H 0.122 0.878 46 H 0.129 0.871 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.651 -24.136 -23.971 34.023 hybrid contribution -0.415 -1.058 1.891 2.206 sum -1.066 -25.194 -22.080 33.517 Atomic orbital electron populations 1.21765 0.95452 1.02222 1.01594 1.21143 0.96087 0.92137 1.03154 1.22483 0.91222 0.99442 1.02001 0.89739 1.23194 1.00394 1.03205 0.90363 1.22376 0.98047 0.98309 1.02165 0.82497 1.20407 0.82444 0.86021 0.79378 1.90732 1.55507 1.50709 1.50644 1.45742 1.06797 1.28369 1.55116 1.21295 0.95690 0.87922 0.95835 1.21990 0.92145 0.98247 1.03006 1.20993 0.96068 0.99224 0.80085 0.91943 1.22115 0.93893 1.02099 1.03365 1.45911 1.70618 1.08563 1.11337 1.20009 0.75907 0.84660 0.87410 1.90685 1.51316 1.27570 1.74716 1.23388 1.05699 1.03555 0.95609 1.85550 1.90688 1.06537 1.09650 1.23172 1.54347 0.96160 0.95910 0.90005 1.26153 0.94530 0.94268 1.04307 1.70180 1.47191 1.00843 1.36493 0.84995 0.79206 0.77932 0.75805 1.18473 1.20277 1.18829 0.91379 0.92499 0.93866 0.91257 0.89533 0.84636 0.89786 0.74085 0.93799 0.93101 0.87506 0.86740 0.95129 0.90382 0.89287 0.74873 0.87835 0.87109 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.87 71.98 0.71 -0.88 16 2 C -0.09 -0.82 6.22 30.60 0.19 -0.63 16 3 C -0.13 -1.89 5.25 -10.79 -0.06 -1.95 16 4 H 0.08 1.80 7.60 -2.39 -0.02 1.78 16 5 C -0.13 -1.41 9.88 30.60 0.30 -1.10 16 6 C -0.19 -2.30 5.91 -11.54 -0.07 -2.37 16 7 H 0.16 0.82 8.14 -2.38 -0.02 0.80 16 8 C 0.53 10.79 7.61 87.66 0.67 11.46 16 9 O -0.60 -19.27 16.26 -3.06 -0.05 -19.32 16 10 N -0.71 -9.67 5.56 -463.06 -2.57 -12.24 16 11 C 0.12 2.08 5.56 86.38 0.48 2.56 16 12 C -0.12 -1.22 4.87 30.59 0.15 -1.07 16 13 C 0.14 2.80 2.57 44.99 0.12 2.91 16 14 H 0.06 1.65 7.58 -2.38 -0.02 1.63 16 15 C -0.16 -2.77 9.48 71.98 0.68 -2.09 16 16 N -0.71 -17.36 4.53 -442.55 -2.00 -19.37 16 17 C 0.53 20.06 7.81 87.66 0.68 20.75 16 18 O -0.56 -26.63 15.52 -3.02 -0.05 -26.68 16 19 C -0.13 -5.38 6.16 71.23 0.44 -4.94 16 20 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 21 C -0.55 -32.11 9.50 67.95 0.65 -31.46 16 22 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 23 C 0.01 0.71 5.49 84.86 0.47 1.18 16 24 N -0.91 -57.08 13.22 21.65 0.29 -56.80 16 25 Si 1.00 44.55 29.55 68.60 2.03 46.58 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 28 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.46 7.87 -2.39 -0.02 0.44 16 34 H 0.14 0.59 8.03 -2.39 -0.02 0.57 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.42 2.12 8.47 -92.71 -0.79 1.33 16 37 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.15 7.75 -2.39 -0.02 1.13 16 39 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.41 7.33 8.60 -92.71 -0.80 6.53 16 45 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 46 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 47 H 0.27 15.80 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -88.50 408.74 1.27 -87.23 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -0.62 Total: 18.04 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.41 Total: -7.64 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -4.29 Total: -88.40 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.10 Total: -46.00 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -88.50 1.27 -87.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078647766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.852 kcal (2) G-P(sol) polarization free energy of solvation -88.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds