Wall clock time and date at job start Tue Mar 31 2020 15:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47413 * 2 1 4 4 H 1.08995 * 109.47228 * 305.00586 * 3 2 1 5 5 C 1.53006 * 109.47040 * 65.00316 * 3 2 1 6 6 C 1.50697 * 109.47306 * 184.99772 * 3 2 1 7 7 O 1.21273 * 120.00149 * 343.11866 * 6 3 2 8 8 N 1.34786 * 119.99733 * 163.11713 * 6 3 2 9 9 C 1.46498 * 119.99508 * 185.87735 * 8 6 3 10 10 C 1.52999 * 109.47098 * 275.25348 * 9 8 6 11 11 C 1.46490 * 120.00207 * 5.87477 * 8 6 3 12 12 C 1.53491 * 114.20858 * 115.18769 * 11 8 6 13 13 N 1.47066 * 87.98457 * 87.52126 * 12 11 8 14 14 C 1.34782 * 136.05274 * 207.08518 * 13 12 11 15 15 O 1.21271 * 120.00375 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99534 * 179.97438 * 14 13 12 17 17 S 1.80999 * 109.46976 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99775 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00262 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99519 * 179.72632 * 18 17 16 21 21 N 1.31636 * 119.99666 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00521 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47390 * 89.99803 * 22 20 18 24 24 H 1.48499 * 109.47369 * 210.00160 * 22 20 18 25 25 H 1.48502 * 109.46524 * 329.99880 * 22 20 18 26 26 C 1.47066 * 87.88627 * 27.34659 * 13 12 11 27 27 H 1.09004 * 109.46749 * 299.99651 * 1 2 3 28 28 H 1.08992 * 109.47301 * 59.99311 * 1 2 3 29 29 H 1.09001 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47163 * 240.00005 * 2 1 3 31 31 H 1.09004 * 109.47305 * 120.00280 * 2 1 3 32 32 H 1.08997 * 109.47342 * 64.89671 * 5 3 2 33 33 H 1.08997 * 109.47363 * 184.90009 * 5 3 2 34 34 H 1.09002 * 109.46825 * 304.89756 * 5 3 2 35 35 H 1.08999 * 109.47550 * 35.25826 * 9 8 6 36 36 H 1.09007 * 109.47092 * 155.25563 * 9 8 6 37 37 H 1.09006 * 109.46854 * 300.00150 * 10 9 8 38 38 H 1.08997 * 109.47337 * 60.00525 * 10 9 8 39 39 H 1.09004 * 109.47450 * 180.02562 * 10 9 8 40 40 H 1.09004 * 113.28213 * 342.11685 * 11 8 6 41 41 H 1.09005 * 113.46780 * 332.73968 * 12 11 8 42 42 H 1.09008 * 113.46949 * 202.29837 * 12 11 8 43 43 H 1.09004 * 109.46631 * 60.00197 * 16 14 13 44 44 H 1.09004 * 109.47341 * 300.00408 * 16 14 13 45 45 H 0.97005 * 119.99755 * 179.97438 * 21 20 18 46 46 H 1.08991 * 113.46763 * 87.43806 * 26 13 12 47 47 H 1.08998 * 113.46658 * 217.88093 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4442 -0.1238 7 8 4.1700 0.4315 0.1011 8 7 4.1870 2.5714 -0.4844 9 6 5.6309 2.5422 -0.7300 10 6 6.3772 2.7072 0.5954 11 6 3.4443 3.8255 -0.6307 12 6 3.8417 4.9136 0.3763 13 7 4.8894 5.3314 -0.5674 14 6 6.0907 5.9361 -0.4784 15 8 6.5244 6.2667 0.6048 16 6 6.8954 6.2004 -1.7249 17 16 8.4480 7.0168 -1.2788 18 6 9.1666 7.2016 -2.8770 19 1 8.6396 6.8467 -3.7504 20 6 10.4077 7.8078 -3.0139 21 7 10.9448 7.9454 -4.2078 22 14 11.3158 8.4285 -1.5041 23 1 12.1801 7.3470 -0.9669 24 1 12.1561 9.5948 -1.8765 25 1 10.3329 8.8370 -0.4686 26 6 4.0466 4.8050 -1.6516 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.1394 1.6407 2.1429 33 1 1.9220 3.1775 1.2715 34 1 0.5561 2.0486 1.4393 35 1 5.9031 1.5893 -1.1841 36 1 5.9015 3.3558 -1.4031 37 1 6.1050 3.6601 1.0493 38 1 6.1067 1.8936 1.2684 39 1 7.4516 2.6859 0.4126 40 1 2.3686 3.6801 -0.7304 41 1 4.2341 4.5162 1.3124 42 1 3.0691 5.6673 0.5286 43 1 6.3257 6.8438 -2.3954 44 1 7.1122 5.2562 -2.2244 45 1 11.8120 8.3694 -4.3036 46 1 3.3281 5.5299 -2.0338 47 1 4.6135 4.3150 -2.4432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079323241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:03 Heat of formation + Delta-G solvation = -34.038410 kcal Electronic energy + Delta-G solvation = -26792.489398 eV Core-core repulsion = 23103.197040 eV Total energy + Delta-G solvation = -3689.292358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43100 -39.65510 -37.79611 -35.93532 -34.83965 -32.47501 -31.70687 -30.44783 -29.60570 -27.89694 -26.38665 -25.71562 -25.62108 -23.61532 -22.71701 -21.16763 -19.73000 -18.43181 -17.97117 -17.70163 -16.96078 -16.11929 -15.93866 -15.73675 -15.45400 -15.08507 -14.92976 -14.49299 -14.03343 -13.96676 -13.83697 -13.52791 -13.36728 -13.17368 -12.85816 -12.83299 -12.61944 -12.48982 -12.27925 -12.09668 -12.07084 -11.97181 -11.63209 -11.38436 -11.28924 -11.19253 -11.05481 -11.03911 -10.85915 -10.65758 -9.92461 -9.87967 -9.57857 -9.03874 -8.98315 -8.77129 -8.55228 -6.96956 -6.32393 -4.04854 2.33666 2.48547 2.59011 2.86469 3.05893 3.30625 3.47416 3.52581 3.89046 4.02733 4.25908 4.31260 4.35105 4.51537 4.61507 4.63416 4.87122 4.95796 4.98105 5.02497 5.06729 5.09811 5.10269 5.15849 5.20539 5.28893 5.36059 5.39215 5.42641 5.48892 5.51255 5.60319 5.66727 5.69306 5.77755 5.78277 5.89451 5.93428 5.96837 5.99626 6.30738 6.34377 7.12181 7.64456 7.90552 7.92083 8.33505 8.37784 9.13609 10.76752 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.002661 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.803605 B =10519.385267 C =10663.029913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.112 4.112 4 H 0.094 0.906 5 C -0.148 4.148 6 C 0.521 3.479 7 O -0.531 6.531 8 N -0.590 5.590 9 C 0.113 3.887 10 C -0.167 4.167 11 C 0.096 3.904 12 C 0.090 3.910 13 N -0.649 5.649 14 C 0.563 3.437 15 O -0.512 6.512 16 C -0.117 4.117 17 S -0.139 6.139 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.879 5.879 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.090 3.910 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.271 0.729 46 H 0.101 0.899 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.188 -12.057 6.654 27.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.133 4.133 4 H 0.112 0.888 5 C -0.205 4.205 6 C 0.310 3.690 7 O -0.407 6.407 8 N -0.322 5.322 9 C -0.009 4.009 10 C -0.226 4.226 11 C -0.010 4.010 12 C -0.035 4.035 13 N -0.388 5.388 14 C 0.352 3.648 15 O -0.385 6.385 16 C -0.267 4.267 17 S 0.087 5.913 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.034 4.034 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.142 0.858 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.774 -11.943 8.283 27.017 hybrid contribution 0.160 0.203 -0.992 1.026 sum -22.614 -11.740 7.290 26.502 Atomic orbital electron populations 1.21845 0.95370 1.01966 1.01902 1.21347 0.95446 0.94127 1.03481 1.21396 0.91773 0.99479 1.00641 0.88752 1.21889 1.02434 1.00463 0.95761 1.20706 0.90116 0.82392 0.75813 1.90707 1.68881 1.32518 1.48581 1.47689 1.08692 1.07514 1.68316 1.21493 0.78292 1.02790 0.98281 1.22138 1.00668 1.02253 0.97492 1.22539 0.96865 0.84158 0.97432 1.23474 0.89622 0.94586 0.95821 1.49644 1.16640 1.61884 1.10664 1.19850 0.78889 0.75114 0.90923 1.90724 1.68708 1.49595 1.29496 1.23234 1.00802 1.04907 0.97782 1.84820 1.15275 1.76450 1.14766 1.22287 1.07327 1.46072 0.91210 0.89391 1.24709 0.96133 0.94170 0.96260 1.69939 1.17622 1.42015 1.21986 0.86744 0.81641 0.79662 0.83869 1.19167 1.19886 1.15943 1.23438 0.93043 0.94259 0.92706 0.92339 0.92666 0.92461 0.91503 0.91009 0.91943 0.91855 0.90935 0.90373 0.90069 0.91913 0.92517 0.91447 0.85806 0.89933 0.88848 0.88585 0.88775 0.91898 0.88090 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.67 37.15 0.36 -0.39 16 2 C -0.11 -0.75 4.75 -26.74 -0.13 -0.88 16 3 C -0.11 -0.74 1.87 -91.77 -0.17 -0.91 16 4 H 0.09 0.43 6.87 -51.93 -0.36 0.07 16 5 C -0.15 -0.80 8.80 37.16 0.33 -0.47 16 6 C 0.52 5.42 6.83 -10.98 -0.08 5.34 16 7 O -0.53 -7.66 15.72 5.56 0.09 -7.57 16 8 N -0.59 -5.70 2.72 -165.74 -0.45 -6.15 16 9 C 0.11 1.36 5.23 -4.04 -0.02 1.34 16 10 C -0.17 -2.30 10.12 37.16 0.38 -1.92 16 11 C 0.10 0.65 3.49 -67.68 -0.24 0.41 16 12 C 0.09 0.79 7.34 -8.51 -0.06 0.72 16 13 N -0.65 -7.78 2.11 -185.07 -0.39 -8.17 16 14 C 0.56 9.71 7.15 -10.98 -0.08 9.64 16 15 O -0.51 -10.87 16.50 5.57 0.09 -10.78 16 16 C -0.12 -2.21 5.98 36.01 0.22 -2.00 16 17 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 18 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 19 H 0.09 2.61 8.03 -52.49 -0.42 2.18 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.33 13.97 55.49 0.78 -25.55 16 22 Si 0.86 21.66 27.74 -169.99 -4.71 16.95 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.24 -5.95 6.74 56.52 0.38 -5.56 16 26 C 0.09 0.69 7.43 -8.37 -0.06 0.63 16 27 H 0.06 0.25 6.46 -51.93 -0.34 -0.09 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.29 6.14 -51.93 -0.32 -0.03 16 34 H 0.07 0.28 6.35 -51.93 -0.33 -0.05 16 35 H 0.08 0.99 7.68 -51.93 -0.40 0.59 16 36 H 0.08 0.98 5.19 -51.92 -0.27 0.71 16 37 H 0.06 0.94 5.42 -51.93 -0.28 0.66 16 38 H 0.06 0.80 8.03 -51.93 -0.42 0.38 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.12 0.43 5.52 -51.93 -0.29 0.14 16 41 H 0.08 0.87 7.15 -51.93 -0.37 0.50 16 42 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 44 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.70 7.06 -51.93 -0.37 0.33 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -35.75 381.99 -7.71 -43.46 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.53 Total: -2.15 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 0.66 Total: -0.31 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.07 Total: -39.87 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.18 Total: -18.35 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.75 -7.71 -43.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079323241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.425 kcal (2) G-P(sol) polarization free energy of solvation -35.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds