Wall clock time and date at job start Tue Mar 31 2020 15:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47413 * 2 1 4 4 H 1.08995 * 109.47228 * 305.00586 * 3 2 1 5 5 C 1.53006 * 109.47040 * 65.00316 * 3 2 1 6 6 C 1.50697 * 109.47306 * 184.99772 * 3 2 1 7 7 O 1.21273 * 120.00149 * 343.11866 * 6 3 2 8 8 N 1.34786 * 119.99733 * 163.11713 * 6 3 2 9 9 C 1.46498 * 119.99508 * 185.87735 * 8 6 3 10 10 C 1.52999 * 109.47098 * 275.25348 * 9 8 6 11 11 C 1.46490 * 120.00207 * 5.87477 * 8 6 3 12 12 C 1.53491 * 114.20858 * 115.18769 * 11 8 6 13 13 N 1.47066 * 87.98457 * 87.52126 * 12 11 8 14 14 C 1.34782 * 136.05274 * 207.08518 * 13 12 11 15 15 O 1.21271 * 120.00375 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99534 * 179.97438 * 14 13 12 17 17 S 1.80999 * 109.46976 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99775 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00262 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99519 * 179.72632 * 18 17 16 21 21 N 1.31636 * 119.99666 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00521 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47390 * 89.99803 * 22 20 18 24 24 H 1.48499 * 109.47369 * 210.00160 * 22 20 18 25 25 H 1.48502 * 109.46524 * 329.99880 * 22 20 18 26 26 C 1.47066 * 87.88627 * 27.34659 * 13 12 11 27 27 H 1.09004 * 109.46749 * 299.99651 * 1 2 3 28 28 H 1.08992 * 109.47301 * 59.99311 * 1 2 3 29 29 H 1.09001 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47163 * 240.00005 * 2 1 3 31 31 H 1.09004 * 109.47305 * 120.00280 * 2 1 3 32 32 H 1.08997 * 109.47342 * 64.89671 * 5 3 2 33 33 H 1.08997 * 109.47363 * 184.90009 * 5 3 2 34 34 H 1.09002 * 109.46825 * 304.89756 * 5 3 2 35 35 H 1.08999 * 109.47550 * 35.25826 * 9 8 6 36 36 H 1.09007 * 109.47092 * 155.25563 * 9 8 6 37 37 H 1.09006 * 109.46854 * 300.00150 * 10 9 8 38 38 H 1.08997 * 109.47337 * 60.00525 * 10 9 8 39 39 H 1.09004 * 109.47450 * 180.02562 * 10 9 8 40 40 H 1.09004 * 113.28213 * 342.11685 * 11 8 6 41 41 H 1.09005 * 113.46780 * 332.73968 * 12 11 8 42 42 H 1.09008 * 113.46949 * 202.29837 * 12 11 8 43 43 H 1.09004 * 109.46631 * 60.00197 * 16 14 13 44 44 H 1.09004 * 109.47341 * 300.00408 * 16 14 13 45 45 H 0.97005 * 119.99755 * 179.97438 * 21 20 18 46 46 H 1.08991 * 113.46763 * 87.43806 * 26 13 12 47 47 H 1.08998 * 113.46658 * 217.88093 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4442 -0.1238 7 8 4.1700 0.4315 0.1011 8 7 4.1870 2.5714 -0.4844 9 6 5.6309 2.5422 -0.7300 10 6 6.3772 2.7072 0.5954 11 6 3.4443 3.8255 -0.6307 12 6 3.8417 4.9136 0.3763 13 7 4.8894 5.3314 -0.5674 14 6 6.0907 5.9361 -0.4784 15 8 6.5244 6.2667 0.6048 16 6 6.8954 6.2004 -1.7249 17 16 8.4480 7.0168 -1.2788 18 6 9.1666 7.2016 -2.8770 19 1 8.6396 6.8467 -3.7504 20 6 10.4077 7.8078 -3.0139 21 7 10.9448 7.9454 -4.2078 22 14 11.3158 8.4285 -1.5041 23 1 12.1801 7.3470 -0.9669 24 1 12.1561 9.5948 -1.8765 25 1 10.3329 8.8370 -0.4686 26 6 4.0466 4.8050 -1.6516 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.1394 1.6407 2.1429 33 1 1.9220 3.1775 1.2715 34 1 0.5561 2.0486 1.4393 35 1 5.9031 1.5893 -1.1841 36 1 5.9015 3.3558 -1.4031 37 1 6.1050 3.6601 1.0493 38 1 6.1067 1.8936 1.2684 39 1 7.4516 2.6859 0.4126 40 1 2.3686 3.6801 -0.7304 41 1 4.2341 4.5162 1.3124 42 1 3.0691 5.6673 0.5286 43 1 6.3257 6.8438 -2.3954 44 1 7.1122 5.2562 -2.2244 45 1 11.8120 8.3694 -4.3036 46 1 3.3281 5.5299 -2.0338 47 1 4.6135 4.3150 -2.4432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079323241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:01 Heat of formation + Delta-G solvation = -57.486333 kcal Electronic energy + Delta-G solvation = -26793.506176 eV Core-core repulsion = 23103.197040 eV Total energy + Delta-G solvation = -3690.309136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.26710 -40.60244 -38.98848 -36.53934 -35.79021 -34.69269 -32.70167 -31.63228 -30.25013 -28.99368 -27.86351 -27.09245 -26.25168 -24.48178 -23.57546 -21.86037 -20.80757 -19.78025 -19.10002 -18.60578 -18.15730 -17.20234 -17.05278 -16.89696 -16.82300 -16.31670 -15.80705 -15.66581 -15.46670 -14.93649 -14.86101 -14.65233 -14.39339 -14.25563 -14.12042 -13.59304 -13.51638 -13.43398 -13.31793 -13.23004 -13.04368 -12.86972 -12.78375 -12.61729 -12.54135 -12.36844 -12.20329 -11.90022 -11.87904 -11.63512 -11.54101 -11.19436 -10.97081 -10.69277 -10.56357 -9.87790 -9.72170 -9.02603 -8.53710 -6.24652 0.93032 1.29134 1.41450 1.49227 1.54475 1.54981 1.83569 1.96101 2.22464 2.65179 2.84609 3.22032 3.37570 3.43421 3.85443 3.86350 3.94309 4.02444 4.11623 4.18545 4.23958 4.33426 4.39280 4.41571 4.48486 4.55894 4.57947 4.64853 4.67663 4.72321 4.77049 4.81240 4.85254 4.94736 5.00921 5.08986 5.14279 5.19204 5.26599 5.39953 5.45945 5.56813 5.68705 6.09208 6.35519 6.57392 6.91586 7.07330 7.12143 8.58614 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.002661 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.803605 B =10519.385267 C =10663.029913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.103 4.103 4 H 0.131 0.869 5 C -0.146 4.146 6 C 0.516 3.484 7 O -0.581 6.581 8 N -0.590 5.590 9 C 0.118 3.882 10 C -0.157 4.157 11 C 0.108 3.892 12 C 0.086 3.914 13 N -0.650 5.650 14 C 0.565 3.435 15 O -0.563 6.563 16 C -0.102 4.102 17 S -0.175 6.175 18 C -0.526 4.526 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.912 3.088 23 H -0.264 1.264 24 H -0.258 1.258 25 H -0.237 1.237 26 C 0.088 3.912 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.177 0.823 41 H 0.061 0.939 42 H 0.133 0.867 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.277 0.723 46 H 0.144 0.856 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.892 -11.509 6.734 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.124 4.124 4 H 0.149 0.851 5 C -0.203 4.203 6 C 0.307 3.693 7 O -0.460 6.460 8 N -0.321 5.321 9 C -0.005 4.005 10 C -0.216 4.216 11 C 0.003 3.997 12 C -0.037 4.037 13 N -0.387 5.387 14 C 0.353 3.647 15 O -0.442 6.442 16 C -0.253 4.253 17 S 0.051 5.949 18 C -0.674 4.674 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.553 5.553 22 Si 0.734 3.266 23 H -0.189 1.189 24 H -0.182 1.182 25 H -0.161 1.161 26 C -0.035 4.035 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.194 0.806 41 H 0.080 0.920 42 H 0.150 0.850 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.086 0.914 46 H 0.162 0.838 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -26.554 -11.404 8.330 30.076 hybrid contribution 1.152 -0.108 -1.055 1.566 sum -25.402 -11.512 7.276 28.822 Atomic orbital electron populations 1.21812 0.93186 1.02323 1.03168 1.21327 0.97216 0.94285 1.01644 1.21478 0.88432 0.99741 1.02764 0.85132 1.21921 1.03683 1.00743 0.93973 1.21531 0.91775 0.81585 0.74432 1.90690 1.70216 1.34420 1.50654 1.47770 1.07680 1.08807 1.67827 1.21275 0.80148 1.02157 0.96919 1.22021 1.00126 1.01059 0.98356 1.22806 0.98886 0.82087 0.95921 1.23861 0.88913 0.96044 0.94843 1.49630 1.15667 1.59294 1.14077 1.19345 0.80448 0.75694 0.89166 1.90699 1.70448 1.52435 1.30618 1.23178 0.97882 1.04791 0.99403 1.84752 1.19336 1.77773 1.12994 1.22424 1.07483 1.45408 0.92096 0.91920 1.25539 0.97037 0.94487 0.98852 1.70014 1.18405 1.43138 1.23785 0.85896 0.80492 0.79631 0.80539 1.18915 1.18208 1.16087 1.23888 0.92725 0.95017 0.91835 0.91194 0.91121 0.92743 0.93078 0.93354 0.94209 0.90384 0.88574 0.91500 0.89986 0.93093 0.93437 0.92833 0.80616 0.92024 0.84975 0.87106 0.87824 0.91350 0.83830 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 71.98 0.70 -0.29 16 2 C -0.11 -1.33 4.75 30.59 0.15 -1.19 16 3 C -0.10 -1.02 1.87 -11.54 -0.02 -1.04 16 4 H 0.13 0.38 6.87 -2.39 -0.02 0.37 16 5 C -0.15 -1.02 8.80 71.98 0.63 -0.39 16 6 C 0.52 9.96 6.83 87.65 0.60 10.56 16 7 O -0.58 -17.08 15.72 -3.01 -0.05 -17.13 16 8 N -0.59 -10.17 2.72 -796.67 -2.17 -12.33 16 9 C 0.12 2.82 5.23 86.38 0.45 3.27 16 10 C -0.16 -4.49 10.12 71.98 0.73 -3.76 16 11 C 0.11 0.96 3.49 45.55 0.16 1.12 16 12 C 0.09 1.19 7.34 83.18 0.61 1.80 16 13 N -0.65 -13.85 2.11 -857.83 -1.81 -15.66 16 14 C 0.56 18.98 7.15 87.66 0.63 19.61 16 15 O -0.56 -24.09 16.50 -3.00 -0.05 -24.13 16 16 C -0.10 -3.80 5.98 71.24 0.43 -3.37 16 17 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 18 C -0.53 -30.51 10.04 67.95 0.68 -29.83 16 19 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 20 C 0.05 2.72 5.50 84.86 0.47 3.19 16 21 N -0.92 -55.61 13.97 21.65 0.30 -55.31 16 22 Si 0.91 45.14 27.74 68.60 1.90 47.04 16 23 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 26 C 0.09 0.94 7.43 83.27 0.62 1.56 16 27 H 0.07 0.32 6.46 -2.38 -0.02 0.30 16 28 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.82 8.08 -2.38 -0.02 0.80 16 32 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 0.32 6.14 -2.39 -0.01 0.31 16 34 H 0.10 0.27 6.35 -2.39 -0.02 0.26 16 35 H 0.07 1.75 7.68 -2.39 -0.02 1.73 16 36 H 0.08 1.93 5.19 -2.38 -0.01 1.92 16 37 H 0.05 1.57 5.42 -2.38 -0.01 1.56 16 38 H 0.05 1.41 8.03 -2.39 -0.02 1.39 16 39 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.18 -0.09 5.52 -2.38 -0.01 -0.10 16 41 H 0.06 1.17 7.15 -2.38 -0.02 1.16 16 42 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 44 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 45 H 0.28 15.57 8.31 -92.70 -0.77 14.80 16 46 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.08 1.04 7.06 -2.39 -0.02 1.03 16 Total: -1.00 -83.80 381.99 4.83 -78.97 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.92 Total: 7.22 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 6.82 Total: 1.23 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -3.67 Total: -83.30 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -0.10 Total: -41.26 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -83.80 4.83 -78.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079323241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.479 kcal (2) G-P(sol) polarization free energy of solvation -83.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds