Wall clock time and date at job start Tue Mar 31 2020 15:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47574 * 2 1 4 4 H 1.09005 * 109.47010 * 305.00023 * 3 2 1 5 5 C 1.52996 * 109.47109 * 64.99767 * 3 2 1 6 6 C 1.50701 * 109.47478 * 185.00289 * 3 2 1 7 7 O 1.21279 * 119.99609 * 328.41335 * 6 3 2 8 8 N 1.34769 * 120.00196 * 148.41891 * 6 3 2 9 9 C 1.47067 * 136.05928 * 175.94328 * 8 6 3 10 10 C 1.53489 * 87.98835 * 153.13510 * 9 8 6 11 11 N 1.46504 * 114.20572 * 139.65408 * 10 9 8 12 12 C 1.46492 * 119.99965 * 332.87060 * 11 10 9 13 13 C 1.53005 * 109.47203 * 90.00245 * 12 11 10 14 14 C 1.34773 * 119.99703 * 152.87471 * 11 10 9 15 15 O 1.21280 * 120.00419 * 4.29509 * 14 11 10 16 16 C 1.50701 * 119.99707 * 184.29609 * 14 11 10 17 17 S 1.81001 * 109.47225 * 179.97438 * 16 14 11 18 18 C 1.76199 * 100.00239 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99903 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00218 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99705 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47296 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47305 * 120.00309 * 22 20 18 25 25 H 1.48511 * 109.46757 * 239.99781 * 22 20 18 26 26 C 1.47066 * 136.05600 * 356.31289 * 8 6 3 27 27 H 1.08997 * 109.47774 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47209 * 300.00465 * 1 2 3 29 29 H 1.09002 * 109.47200 * 59.99913 * 1 2 3 30 30 H 1.09004 * 109.47209 * 239.99535 * 2 1 3 31 31 H 1.09002 * 109.47200 * 120.00087 * 2 1 3 32 32 H 1.09001 * 109.47022 * 173.79818 * 5 3 2 33 33 H 1.09004 * 109.47241 * 293.79846 * 5 3 2 34 34 H 1.09000 * 109.47073 * 53.79741 * 5 3 2 35 35 H 1.08997 * 113.46551 * 267.92027 * 9 8 6 36 36 H 1.08999 * 113.46743 * 38.35218 * 9 8 6 37 37 H 1.09003 * 114.38821 * 272.46674 * 10 9 8 38 38 H 1.09007 * 109.47017 * 210.00045 * 12 11 10 39 39 H 1.08997 * 109.47533 * 330.00070 * 12 11 10 40 40 H 1.08997 * 109.47019 * 59.99510 * 13 12 11 41 41 H 1.08998 * 109.47334 * 179.97438 * 13 12 11 42 42 H 1.09005 * 109.46957 * 300.00377 * 13 12 11 43 43 H 1.08997 * 109.47492 * 299.99438 * 16 14 11 44 44 H 1.09000 * 109.47427 * 59.99919 * 16 14 11 45 45 H 0.97001 * 120.00020 * 179.97438 * 21 20 18 46 46 H 1.09005 * 113.47211 * 321.64054 * 26 8 6 47 47 H 1.09002 * 113.46648 * 92.08555 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5420 1.4442 -0.1239 7 8 4.1904 0.5346 0.3483 8 7 4.1645 2.4566 -0.7593 9 6 5.5588 2.8480 -1.0157 10 6 5.0670 3.5712 -2.2771 11 7 5.7109 4.8650 -2.5174 12 6 6.2413 5.6393 -1.3926 13 6 7.6999 5.2478 -1.1466 14 6 5.8152 5.3428 -3.7732 15 8 5.3080 4.7403 -4.6955 16 6 6.5623 6.6259 -4.0315 17 16 6.5262 6.9991 -5.8023 18 6 7.4454 8.5022 -5.8171 19 1 7.8317 8.9080 -4.8938 20 6 7.6720 9.1654 -7.0151 21 7 7.2007 8.6710 -8.1404 22 14 8.6471 10.7586 -7.0308 23 1 9.0628 11.0982 -5.6463 24 1 9.8516 10.5935 -7.8834 25 1 7.8012 11.8512 -7.5752 26 6 3.7486 3.6597 -1.4958 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0909 3.1156 1.3560 33 1 0.5503 2.2240 1.3456 34 1 1.9763 1.5274 2.1516 35 1 5.9666 3.5204 -0.2610 36 1 6.2147 2.0036 -1.2274 37 1 5.0182 2.9425 -3.1662 38 1 6.1848 6.7028 -1.6248 39 1 5.6535 5.4309 -0.4987 40 1 8.2876 5.4562 -2.0405 41 1 8.0947 5.8242 -0.3100 42 1 7.7564 4.1843 -0.9145 43 1 6.0907 7.4385 -3.4790 44 1 7.5964 6.5164 -3.7047 45 1 7.3588 9.1347 -8.9777 46 1 2.8654 3.5056 -2.1158 47 1 3.6744 4.5484 -0.8690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079342744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:10 Heat of formation + Delta-G solvation = -41.675943 kcal Electronic energy + Delta-G solvation = -25831.084769 eV Core-core repulsion = 22141.461223 eV Total energy + Delta-G solvation = -3689.623546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17357 -39.55256 -38.10709 -35.68081 -35.41639 -32.46477 -31.14042 -30.36446 -29.72265 -28.22652 -26.42265 -25.57326 -25.42321 -23.70732 -22.60432 -21.01259 -19.20338 -19.10548 -17.76648 -17.57293 -17.21747 -16.37741 -16.17319 -15.43139 -15.14792 -14.99933 -14.83785 -14.37117 -14.05682 -13.84578 -13.77987 -13.55842 -13.38219 -13.08384 -13.00489 -12.82022 -12.58429 -12.55389 -12.40003 -12.12331 -12.08631 -11.94623 -11.69167 -11.33973 -11.19298 -11.13435 -11.08504 -11.05291 -11.03779 -10.78864 -10.00841 -9.83760 -9.48366 -9.10870 -9.03839 -8.71133 -8.27099 -6.54624 -6.25463 -3.96385 2.31555 2.32789 2.87751 2.93757 3.18865 3.23166 3.28317 3.53012 3.94385 4.15999 4.17734 4.35531 4.52575 4.55802 4.66680 4.75499 4.86209 4.96577 5.00465 5.02972 5.08347 5.09591 5.10793 5.15463 5.17113 5.24363 5.30922 5.37953 5.45654 5.48627 5.54466 5.57327 5.60388 5.68517 5.70011 5.79789 5.86512 5.88684 5.98076 5.98792 6.17335 6.49360 7.32281 7.43867 7.56353 7.86431 8.31629 8.41729 9.20136 10.81963 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.002225 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.210950 B =12580.377937 C =13080.967586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.104 4.104 4 H 0.090 0.910 5 C -0.139 4.139 6 C 0.550 3.450 7 O -0.539 6.539 8 N -0.644 5.644 9 C 0.089 3.911 10 C 0.119 3.881 11 N -0.609 5.609 12 C 0.102 3.898 13 C -0.178 4.178 14 C 0.538 3.462 15 O -0.510 6.510 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.083 3.917 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.268 0.732 46 H 0.086 0.914 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.189 -10.546 20.019 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.125 4.125 4 H 0.109 0.891 5 C -0.197 4.197 6 C 0.341 3.659 7 O -0.415 6.415 8 N -0.380 5.380 9 C -0.034 4.034 10 C 0.014 3.986 11 N -0.345 5.345 12 C -0.021 4.021 13 C -0.236 4.236 14 C 0.326 3.674 15 O -0.383 6.383 16 C -0.301 4.301 17 S 0.164 5.836 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.042 4.042 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.150 0.850 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.723 -12.095 18.813 24.387 hybrid contribution 1.286 1.892 1.103 2.540 sum -8.437 -10.203 19.916 23.915 Atomic orbital electron populations 1.21822 0.95125 1.02033 1.02026 1.21405 0.95829 0.93947 1.03410 1.21286 0.90969 0.99447 1.00820 0.89142 1.21739 1.02163 1.00252 0.95532 1.20292 0.89933 0.79885 0.75831 1.90705 1.67799 1.35241 1.47792 1.49399 1.09669 1.23625 1.55301 1.23531 0.85367 0.98747 0.95742 1.22681 0.91900 0.86118 0.97934 1.47896 1.59832 1.19578 1.07173 1.21587 0.94594 0.96731 0.89169 1.22330 0.96467 1.01983 1.02806 1.20403 0.79253 0.86422 0.81297 1.90709 1.45853 1.59329 1.42449 1.23599 1.02202 0.96357 1.07912 1.85424 1.72108 1.30488 0.95534 1.22882 1.39770 1.09178 0.96407 0.90860 1.24999 0.95764 0.98230 0.94627 1.70027 1.43117 1.38813 0.98255 0.86118 0.79369 0.81718 0.78296 1.19605 1.20568 1.20568 1.23614 0.99948 0.87415 0.93184 0.92344 0.92360 0.92557 0.91604 0.90788 0.92371 0.91000 0.91805 0.88914 0.89738 0.84966 0.89393 0.90576 0.91517 0.91375 0.92239 0.89166 0.88993 0.92212 0.89547 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.15 0.36 -0.56 16 2 C -0.11 -0.87 4.93 -26.73 -0.13 -1.01 16 3 C -0.10 -0.86 2.62 -91.77 -0.24 -1.10 16 4 H 0.09 0.65 7.72 -51.93 -0.40 0.25 16 5 C -0.14 -0.94 8.77 37.16 0.33 -0.61 16 6 C 0.55 6.31 7.11 -10.99 -0.08 6.24 16 7 O -0.54 -8.16 17.08 5.56 0.09 -8.06 16 8 N -0.64 -6.58 3.69 -185.24 -0.68 -7.26 16 9 C 0.09 0.87 7.14 -8.51 -0.06 0.80 16 10 C 0.12 1.30 4.48 -67.81 -0.30 1.00 16 11 N -0.61 -7.41 2.70 -165.89 -0.45 -7.86 16 12 C 0.10 0.92 5.06 -4.04 -0.02 0.90 16 13 C -0.18 -1.53 9.93 37.16 0.37 -1.16 16 14 C 0.54 9.30 7.68 -10.99 -0.08 9.21 16 15 O -0.51 -10.82 15.46 5.56 0.09 -10.73 16 16 C -0.15 -2.84 4.81 36.01 0.17 -2.66 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.53 -14.75 9.50 30.94 0.29 -14.45 16 19 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 21 N -0.87 -25.64 13.22 55.49 0.73 -24.91 16 22 Si 0.92 20.94 29.55 -169.99 -5.02 15.91 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.08 0.73 7.81 -8.51 -0.07 0.66 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.31 6.71 -51.93 -0.35 -0.04 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.67 8.02 -51.93 -0.42 0.25 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.37 6.88 -51.93 -0.36 0.01 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.76 5.33 -51.93 -0.28 0.48 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.13 1.69 7.45 -51.93 -0.39 1.30 16 38 H 0.09 0.81 6.47 -51.93 -0.34 0.47 16 39 H 0.08 0.51 6.23 -51.93 -0.32 0.19 16 40 H 0.07 0.70 6.98 -51.93 -0.36 0.34 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.49 6.49 -51.93 -0.34 0.15 16 43 H 0.09 1.56 7.27 -51.92 -0.38 1.18 16 44 H 0.09 1.62 6.97 -51.92 -0.36 1.26 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.09 0.72 7.99 -51.93 -0.41 0.30 16 47 H 0.09 0.66 7.43 -51.93 -0.39 0.27 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -34.90 389.63 -8.73 -43.63 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.59 Total: -1.95 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 0.44 Total: -0.79 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.40 Total: -40.03 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.18 Total: -18.80 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.90 -8.73 -43.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.955 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds