Wall clock time and date at job start Tue Mar 31 2020 15:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47574 * 2 1 4 4 H 1.09005 * 109.47010 * 305.00023 * 3 2 1 5 5 C 1.52996 * 109.47109 * 64.99767 * 3 2 1 6 6 C 1.50701 * 109.47478 * 185.00289 * 3 2 1 7 7 O 1.21279 * 119.99609 * 328.41335 * 6 3 2 8 8 N 1.34769 * 120.00196 * 148.41891 * 6 3 2 9 9 C 1.47067 * 136.05928 * 175.94328 * 8 6 3 10 10 C 1.53489 * 87.98835 * 153.13510 * 9 8 6 11 11 N 1.46504 * 114.20572 * 139.65408 * 10 9 8 12 12 C 1.46492 * 119.99965 * 332.87060 * 11 10 9 13 13 C 1.53005 * 109.47203 * 90.00245 * 12 11 10 14 14 C 1.34773 * 119.99703 * 152.87471 * 11 10 9 15 15 O 1.21280 * 120.00419 * 4.29509 * 14 11 10 16 16 C 1.50701 * 119.99707 * 184.29609 * 14 11 10 17 17 S 1.81001 * 109.47225 * 179.97438 * 16 14 11 18 18 C 1.76199 * 100.00239 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99903 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00218 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99705 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47296 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47305 * 120.00309 * 22 20 18 25 25 H 1.48511 * 109.46757 * 239.99781 * 22 20 18 26 26 C 1.47066 * 136.05600 * 356.31289 * 8 6 3 27 27 H 1.08997 * 109.47774 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47209 * 300.00465 * 1 2 3 29 29 H 1.09002 * 109.47200 * 59.99913 * 1 2 3 30 30 H 1.09004 * 109.47209 * 239.99535 * 2 1 3 31 31 H 1.09002 * 109.47200 * 120.00087 * 2 1 3 32 32 H 1.09001 * 109.47022 * 173.79818 * 5 3 2 33 33 H 1.09004 * 109.47241 * 293.79846 * 5 3 2 34 34 H 1.09000 * 109.47073 * 53.79741 * 5 3 2 35 35 H 1.08997 * 113.46551 * 267.92027 * 9 8 6 36 36 H 1.08999 * 113.46743 * 38.35218 * 9 8 6 37 37 H 1.09003 * 114.38821 * 272.46674 * 10 9 8 38 38 H 1.09007 * 109.47017 * 210.00045 * 12 11 10 39 39 H 1.08997 * 109.47533 * 330.00070 * 12 11 10 40 40 H 1.08997 * 109.47019 * 59.99510 * 13 12 11 41 41 H 1.08998 * 109.47334 * 179.97438 * 13 12 11 42 42 H 1.09005 * 109.46957 * 300.00377 * 13 12 11 43 43 H 1.08997 * 109.47492 * 299.99438 * 16 14 11 44 44 H 1.09000 * 109.47427 * 59.99919 * 16 14 11 45 45 H 0.97001 * 120.00020 * 179.97438 * 21 20 18 46 46 H 1.09005 * 113.47211 * 321.64054 * 26 8 6 47 47 H 1.09002 * 113.46648 * 92.08555 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5420 1.4442 -0.1239 7 8 4.1904 0.5346 0.3483 8 7 4.1645 2.4566 -0.7593 9 6 5.5588 2.8480 -1.0157 10 6 5.0670 3.5712 -2.2771 11 7 5.7109 4.8650 -2.5174 12 6 6.2413 5.6393 -1.3926 13 6 7.6999 5.2478 -1.1466 14 6 5.8152 5.3428 -3.7732 15 8 5.3080 4.7403 -4.6955 16 6 6.5623 6.6259 -4.0315 17 16 6.5262 6.9991 -5.8023 18 6 7.4454 8.5022 -5.8171 19 1 7.8317 8.9080 -4.8938 20 6 7.6720 9.1654 -7.0151 21 7 7.2007 8.6710 -8.1404 22 14 8.6471 10.7586 -7.0308 23 1 9.0628 11.0982 -5.6463 24 1 9.8516 10.5935 -7.8834 25 1 7.8012 11.8512 -7.5752 26 6 3.7486 3.6597 -1.4958 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0909 3.1156 1.3560 33 1 0.5503 2.2240 1.3456 34 1 1.9763 1.5274 2.1516 35 1 5.9666 3.5204 -0.2610 36 1 6.2147 2.0036 -1.2274 37 1 5.0182 2.9425 -3.1662 38 1 6.1848 6.7028 -1.6248 39 1 5.6535 5.4309 -0.4987 40 1 8.2876 5.4562 -2.0405 41 1 8.0947 5.8242 -0.3100 42 1 7.7564 4.1843 -0.9145 43 1 6.0907 7.4385 -3.4790 44 1 7.5964 6.5164 -3.7047 45 1 7.3588 9.1347 -8.9777 46 1 2.8654 3.5056 -2.1158 47 1 3.6744 4.5484 -0.8690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079342744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:09 Heat of formation + Delta-G solvation = -64.254426 kcal Electronic energy + Delta-G solvation = -25832.063846 eV Core-core repulsion = 22141.461223 eV Total energy + Delta-G solvation = -3690.602623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.09505 -40.63800 -39.17901 -36.50974 -36.36613 -34.56460 -32.01566 -31.26753 -30.75407 -29.23057 -27.64421 -27.17978 -26.08681 -24.51057 -23.56473 -21.80661 -20.37037 -19.89806 -19.53765 -18.53940 -18.25439 -17.43577 -17.10904 -16.86331 -16.47175 -16.31060 -15.98348 -15.58020 -15.02947 -14.83607 -14.80507 -14.50974 -14.37496 -14.23729 -13.98288 -13.70580 -13.55275 -13.41842 -13.22980 -13.13548 -13.05901 -12.91301 -12.66260 -12.63635 -12.57890 -12.50551 -12.12916 -11.95648 -11.75305 -11.67997 -11.65371 -11.14074 -11.00683 -10.77018 -10.23102 -9.91925 -9.73742 -8.64477 -8.33113 -6.10541 1.21194 1.41128 1.42523 1.47814 1.53442 1.55095 1.68222 2.18785 2.29207 3.01388 3.12018 3.28534 3.37558 3.65848 3.70984 3.79081 3.92756 4.02348 4.06843 4.21418 4.22666 4.31334 4.39356 4.44833 4.48405 4.50060 4.52594 4.56585 4.58371 4.65243 4.71153 4.79004 4.92197 4.94622 4.99238 5.03523 5.08536 5.15324 5.31349 5.39543 5.44420 5.44720 5.54043 6.20564 6.22763 6.56474 6.99505 7.08722 7.11307 8.76164 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.002225 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.210950 B =12580.377937 C =13080.967586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.100 4.100 4 H 0.105 0.895 5 C -0.135 4.135 6 C 0.545 3.455 7 O -0.584 6.584 8 N -0.645 5.645 9 C 0.095 3.905 10 C 0.110 3.890 11 N -0.591 5.591 12 C 0.093 3.907 13 C -0.176 4.176 14 C 0.539 3.461 15 O -0.560 6.560 16 C -0.123 4.123 17 S -0.155 6.155 18 C -0.541 4.541 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.275 1.275 26 C 0.095 3.905 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.270 0.730 46 H 0.094 0.906 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 -8.853 22.877 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.121 4.121 4 H 0.124 0.876 5 C -0.193 4.193 6 C 0.336 3.664 7 O -0.464 6.464 8 N -0.380 5.380 9 C -0.029 4.029 10 C 0.005 3.995 11 N -0.324 5.324 12 C -0.028 4.028 13 C -0.234 4.234 14 C 0.327 3.673 15 O -0.437 6.437 16 C -0.274 4.274 17 S 0.073 5.927 18 C -0.689 4.689 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.178 1.178 24 H -0.202 1.202 25 H -0.200 1.200 26 C -0.029 4.029 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.079 0.921 46 H 0.112 0.888 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.114 -10.392 21.725 26.120 hybrid contribution 1.418 1.268 0.316 1.929 sum -8.696 -9.123 22.042 25.391 Atomic orbital electron populations 1.21792 0.93213 1.02580 1.02891 1.21390 0.97414 0.93785 1.02005 1.21359 0.88562 0.99797 1.02398 0.87638 1.21742 1.03499 1.00022 0.93989 1.20925 0.91164 0.79216 0.75066 1.90682 1.68935 1.36865 1.49887 1.49438 1.10004 1.23812 1.54736 1.23571 0.85291 0.98560 0.95436 1.22657 0.93886 0.85237 0.97712 1.47771 1.58600 1.19832 1.06211 1.21952 0.95376 0.96481 0.88980 1.22316 0.95736 1.02703 1.02659 1.20129 0.78925 0.85748 0.82499 1.90697 1.48104 1.60485 1.44449 1.23416 1.03786 0.98143 1.02049 1.85610 1.72588 1.31280 1.03260 1.23213 1.39519 1.09137 0.97027 0.89794 1.26117 0.96819 1.02205 0.94111 1.70192 1.44822 1.40741 0.99062 0.84925 0.77508 0.76601 0.79049 1.17838 1.20211 1.20018 1.23656 0.98697 0.87685 0.92860 0.92070 0.91128 0.91953 0.93153 0.92168 0.91757 0.88938 0.92765 0.86453 0.90848 0.87530 0.88977 0.87030 0.93786 0.89005 0.91871 0.86952 0.87492 0.92082 0.88805 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.67 71.98 0.70 -0.83 16 2 C -0.11 -1.68 4.93 30.59 0.15 -1.53 16 3 C -0.10 -1.49 2.62 -11.54 -0.03 -1.52 16 4 H 0.11 1.25 7.72 -2.38 -0.02 1.23 16 5 C -0.14 -1.47 8.77 71.98 0.63 -0.84 16 6 C 0.54 11.99 7.11 87.66 0.62 12.62 16 7 O -0.58 -17.81 17.08 -3.03 -0.05 -17.86 16 8 N -0.65 -12.04 3.69 -858.38 -3.17 -15.21 16 9 C 0.09 1.66 7.14 83.17 0.59 2.25 16 10 C 0.11 2.27 4.48 45.46 0.20 2.47 16 11 N -0.59 -13.32 2.70 -797.14 -2.15 -15.47 16 12 C 0.09 1.35 5.06 86.38 0.44 1.78 16 13 C -0.18 -2.50 9.93 71.98 0.71 -1.79 16 14 C 0.54 18.47 7.68 87.66 0.67 19.15 16 15 O -0.56 -24.50 15.46 -3.03 -0.05 -24.55 16 16 C -0.12 -4.57 4.81 71.24 0.34 -4.22 16 17 S -0.15 -8.31 20.57 -56.49 -1.16 -9.48 16 18 C -0.54 -29.96 9.50 67.95 0.65 -29.32 16 19 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 20 C 0.01 0.68 5.49 84.86 0.47 1.14 16 21 N -0.91 -55.16 13.22 21.65 0.29 -54.87 16 22 Si 1.00 42.64 29.55 68.60 2.03 44.67 16 23 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 C 0.09 1.41 7.81 83.18 0.65 2.06 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.56 6.71 -2.38 -0.02 0.55 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.06 1.09 8.02 -2.39 -0.02 1.08 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.64 6.88 -2.38 -0.02 0.62 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.12 1.50 5.33 -2.39 -0.01 1.49 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.11 2.81 7.45 -2.39 -0.02 2.79 16 38 H 0.09 1.33 6.47 -2.38 -0.02 1.31 16 39 H 0.11 0.91 6.23 -2.39 -0.01 0.89 16 40 H 0.04 0.84 6.98 -2.39 -0.02 0.82 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.86 6.49 -2.38 -0.02 0.84 16 43 H 0.11 3.66 7.27 -2.40 -0.02 3.64 16 44 H 0.11 3.65 6.97 -2.40 -0.02 3.63 16 45 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.09 1.33 7.99 -2.38 -0.02 1.31 16 47 H 0.12 1.18 7.43 -2.39 -0.02 1.16 16 Total: -1.00 -80.06 389.63 3.49 -76.57 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.96 Total: 14.77 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 6.80 Total: 1.42 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -5.03 Total: -85.55 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -0.10 Total: -42.41 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.48 kcal Total: -80.06 3.49 -76.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.315 kcal (2) G-P(sol) polarization free energy of solvation -80.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds