Wall clock time and date at job start Tue Mar 31 2020 15:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 H 1.09004 * 109.47066 * 54.99931 * 3 2 1 5 5 C 1.53000 * 109.47166 * 294.99927 * 3 2 1 6 6 C 1.50702 * 109.47159 * 174.99728 * 3 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 3 2 9 9 C 1.47067 * 136.05683 * 359.91428 * 8 6 3 10 10 C 1.53760 * 87.88814 * 152.96026 * 9 8 6 11 11 N 1.46504 * 114.39090 * 272.67121 * 10 9 8 12 12 C 1.46494 * 119.99979 * 213.58924 * 11 10 9 13 13 C 1.52991 * 109.47521 * 89.99916 * 12 11 10 14 14 C 1.34781 * 119.99706 * 33.58816 * 11 10 9 15 15 O 1.21277 * 120.00440 * 359.97438 * 14 11 10 16 16 C 1.50704 * 119.99723 * 180.02562 * 14 11 10 17 17 S 1.80990 * 109.46923 * 180.02562 * 16 14 11 18 18 C 1.76206 * 99.99872 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99991 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00031 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99885 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00023 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46881 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46885 * 120.00225 * 22 20 18 25 25 H 1.48498 * 109.47206 * 240.00141 * 22 20 18 26 26 C 1.47072 * 136.05745 * 180.27198 * 8 6 3 27 27 H 1.09001 * 109.47091 * 60.00619 * 1 2 3 28 28 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47103 * 299.99907 * 1 2 3 30 30 H 1.09005 * 109.47761 * 239.99871 * 2 1 3 31 31 H 1.09000 * 109.47436 * 120.00075 * 2 1 3 32 32 H 1.08994 * 109.47175 * 59.99981 * 5 3 2 33 33 H 1.09001 * 109.46739 * 179.97438 * 5 3 2 34 34 H 1.08996 * 109.46783 * 299.99412 * 5 3 2 35 35 H 1.09008 * 113.46643 * 267.68579 * 9 8 6 36 36 H 1.09001 * 113.47129 * 38.12710 * 9 8 6 37 37 H 1.09003 * 114.26490 * 139.79414 * 10 9 8 38 38 H 1.09002 * 109.47135 * 210.00621 * 12 11 10 39 39 H 1.09004 * 109.47451 * 329.99638 * 12 11 10 40 40 H 1.09009 * 109.47007 * 59.99918 * 13 12 11 41 41 H 1.08997 * 109.47345 * 179.97438 * 13 12 11 42 42 H 1.09002 * 109.47478 * 299.99929 * 13 12 11 43 43 H 1.09005 * 109.46728 * 300.00077 * 16 14 11 44 44 H 1.09000 * 109.47146 * 59.99606 * 16 14 11 45 45 H 0.97002 * 119.99408 * 179.97438 * 21 20 18 46 46 H 1.08997 * 113.46835 * 321.87192 * 26 8 6 47 47 H 1.09005 * 113.45986 * 92.31101 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 8 4.1451 0.3951 0.2038 8 7 4.2153 2.6116 0.1398 9 6 3.8645 4.0377 0.0608 10 6 5.1439 4.3382 0.8590 11 7 4.9748 4.2901 2.3134 12 6 5.7485 5.1913 3.1709 13 6 4.9686 6.4908 3.3801 14 6 4.1075 3.4167 2.8625 15 8 3.4667 2.6709 2.1526 16 6 3.9332 3.3676 4.3586 17 16 2.7100 2.1027 4.7823 18 6 2.7055 2.2571 6.5375 19 1 3.3458 2.9824 7.0174 20 6 1.8789 1.4467 7.3034 21 7 1.0981 0.5631 6.7184 22 14 1.8747 1.6100 9.1643 23 1 2.8349 2.6674 9.5705 24 1 0.5112 1.9747 9.6260 25 1 2.2750 0.3172 9.7755 26 6 5.6249 3.0197 0.2374 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.5490 2.1252 -1.3969 33 1 1.9982 3.1543 -1.3071 34 1 2.0699 1.5875 -2.1491 35 1 3.8835 4.4337 -0.9546 36 1 2.9485 4.2896 0.5950 37 1 5.6886 5.2184 0.5174 38 1 5.9243 4.7138 4.1349 39 1 6.7041 5.4135 2.6960 40 1 4.0130 6.2686 3.8551 41 1 5.5441 7.1612 4.0185 42 1 4.7929 6.9684 2.4162 43 1 4.8862 3.1225 4.8276 44 1 3.5912 4.3387 4.7166 45 1 0.5207 -0.0035 7.2538 46 1 6.2085 2.4045 0.9221 47 1 6.1078 3.1474 -0.7315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079342745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:15 Heat of formation + Delta-G solvation = -38.913526 kcal Electronic energy + Delta-G solvation = -27626.656659 eV Core-core repulsion = 23937.152901 eV Total energy + Delta-G solvation = -3689.503759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.19957 -40.12293 -38.43188 -36.60433 -36.25505 -34.61284 -31.85469 -31.02515 -30.62250 -28.99603 -27.69571 -26.90354 -26.08106 -24.25353 -23.74746 -21.85446 -20.43239 -19.73968 -19.10074 -18.15254 -17.80729 -17.41556 -16.94127 -16.91255 -16.47136 -16.31642 -15.93095 -15.51059 -14.77240 -14.70413 -14.66491 -14.51231 -14.38468 -14.12569 -14.10990 -13.45516 -13.42402 -13.20485 -13.13015 -12.98491 -12.91529 -12.89961 -12.64342 -12.57058 -12.56223 -12.41324 -11.97563 -11.88245 -11.71956 -11.66579 -11.61444 -11.18310 -10.67536 -10.49139 -10.25870 -9.69529 -9.17351 -8.66863 -8.37345 -6.14353 1.24655 1.37585 1.44002 1.54571 1.62722 1.95764 2.09205 2.14974 2.25667 2.96679 3.24453 3.38697 3.54542 3.77497 3.89139 4.01407 4.05652 4.15985 4.21612 4.35600 4.40622 4.43078 4.47878 4.50284 4.54752 4.59700 4.62205 4.63499 4.68182 4.77979 4.79888 4.97702 4.98884 5.03488 5.05674 5.07003 5.17098 5.20869 5.37975 5.39183 5.43706 5.47528 5.76622 6.16426 6.33946 6.99387 7.03938 7.30548 7.44923 8.71884 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.004805 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.508625 B = 5826.088410 C = 7910.488960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 C -0.095 4.095 4 H 0.080 0.920 5 C -0.130 4.130 6 C 0.572 3.428 7 O -0.620 6.620 8 N -0.623 5.623 9 C 0.098 3.902 10 C 0.123 3.877 11 N -0.593 5.593 12 C 0.103 3.897 13 C -0.165 4.165 14 C 0.524 3.476 15 O -0.525 6.525 16 C -0.123 4.123 17 S -0.147 6.147 18 C -0.545 4.545 19 H 0.078 0.922 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.256 1.256 24 H -0.271 1.271 25 H -0.276 1.276 26 C 0.078 3.922 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.133 0.867 36 H 0.063 0.937 37 H 0.178 0.822 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.032 0.968 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.270 0.730 46 H 0.040 0.960 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.197 16.441 -15.820 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 C -0.116 4.116 4 H 0.099 0.901 5 C -0.187 4.187 6 C 0.364 3.636 7 O -0.503 6.503 8 N -0.356 5.356 9 C -0.025 4.025 10 C 0.019 3.981 11 N -0.327 5.327 12 C -0.019 4.019 13 C -0.224 4.224 14 C 0.311 3.689 15 O -0.401 6.401 16 C -0.274 4.274 17 S 0.080 5.920 18 C -0.693 4.693 19 H 0.097 0.903 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.180 1.180 24 H -0.196 1.196 25 H -0.201 1.201 26 C -0.046 4.046 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.151 0.849 36 H 0.082 0.918 37 H 0.195 0.805 38 H 0.086 0.914 39 H 0.136 0.864 40 H 0.051 0.949 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.079 0.921 46 H 0.058 0.942 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.327 14.492 -16.803 23.368 hybrid contribution 0.508 0.042 2.522 2.573 sum 7.835 14.534 -14.281 21.831 Atomic orbital electron populations 1.21766 0.93611 1.02307 1.02306 1.21249 0.96982 0.94961 1.00726 1.21109 0.90815 0.98368 1.01315 0.90148 1.21768 1.02955 1.00359 0.93627 1.20067 0.89882 0.80972 0.72644 1.90584 1.71745 1.33062 1.54940 1.49210 1.09296 1.05790 1.71264 1.23569 0.98910 0.78601 1.01431 1.22683 0.97509 0.98879 0.79075 1.47710 1.41376 1.37194 1.06389 1.21843 0.95521 0.89740 0.94762 1.22173 1.00051 0.96944 1.03186 1.20030 0.80041 0.79957 0.88894 1.90714 1.46312 1.41030 1.62020 1.23402 1.03413 1.04012 0.96561 1.85553 1.51794 1.47502 1.07134 1.23209 1.29089 1.25251 0.91766 0.90349 1.26113 0.93899 0.93820 1.05261 1.70200 1.24666 1.21794 1.38124 0.84936 0.78651 0.78562 0.75996 1.17995 1.19638 1.20114 1.23719 0.84857 0.94358 1.01674 0.89956 0.92031 0.93922 0.91824 0.95744 0.90015 0.90932 0.92277 0.84902 0.91837 0.80487 0.91442 0.86425 0.94882 0.89766 0.90563 0.89244 0.88092 0.92068 0.94165 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.67 71.98 0.70 -3.45 16 2 C -0.10 -3.63 4.75 30.59 0.15 -3.49 16 3 C -0.09 -3.26 2.45 -11.54 -0.03 -3.29 16 4 H 0.08 3.19 7.17 -2.38 -0.02 3.18 16 5 C -0.13 -2.99 8.83 71.98 0.64 -2.36 16 6 C 0.57 22.44 5.22 87.66 0.46 22.90 16 7 O -0.62 -30.58 16.70 -3.04 -0.05 -30.63 16 8 N -0.62 -18.39 2.04 -857.72 -1.75 -20.14 16 9 C 0.10 1.82 5.64 83.27 0.47 2.29 16 10 C 0.12 1.90 4.88 45.55 0.22 2.12 16 11 N -0.59 -13.28 2.74 -796.65 -2.19 -15.47 16 12 C 0.10 1.56 5.95 86.38 0.51 2.07 16 13 C -0.17 -2.19 10.24 71.98 0.74 -1.45 16 14 C 0.52 18.62 7.25 87.66 0.64 19.26 16 15 O -0.53 -22.16 8.34 -3.02 -0.03 -22.18 16 16 C -0.12 -4.99 4.71 71.24 0.34 -4.65 16 17 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 18 C -0.55 -31.90 9.50 67.95 0.65 -31.26 16 19 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 20 C 0.01 0.80 5.49 84.86 0.47 1.27 16 21 N -0.91 -57.35 13.22 21.65 0.29 -57.07 16 22 Si 1.00 44.61 29.55 68.60 2.03 46.64 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.08 1.70 8.18 83.18 0.68 2.38 16 27 H 0.08 1.85 6.57 -2.39 -0.02 1.84 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.02 1.08 7.96 -2.39 -0.02 1.06 16 32 H 0.08 1.61 6.56 -2.39 -0.02 1.59 16 33 H 0.07 1.39 6.31 -2.39 -0.02 1.38 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.13 1.27 8.10 -2.38 -0.02 1.25 16 36 H 0.06 1.49 7.36 -2.39 -0.02 1.48 16 37 H 0.18 0.70 8.10 -2.39 -0.02 0.68 16 38 H 0.07 1.26 6.44 -2.39 -0.02 1.24 16 39 H 0.12 0.92 8.07 -2.39 -0.02 0.90 16 40 H 0.03 0.63 7.22 -2.38 -0.02 0.62 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.09 3.50 7.40 -2.39 -0.02 3.48 16 44 H 0.10 3.77 7.18 -2.39 -0.02 3.75 16 45 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 46 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -90.46 382.93 4.70 -85.76 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.95 Total: 20.25 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 6.61 Total: 2.34 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -3.65 Total: -92.68 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -0.08 Total: -52.81 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -90.46 4.70 -85.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.844 kcal (2) G-P(sol) polarization free energy of solvation -90.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds