Wall clock time and date at job start Tue Mar 31 2020 15:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47169 * 2 1 4 4 C 1.50706 * 109.47080 * 180.02562 * 3 2 1 5 5 O 1.21277 * 119.99739 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00050 * 180.02562 * 4 3 2 7 7 C 1.46968 * 120.65832 * 6.10103 * 6 4 3 8 8 C 1.53191 * 108.88707 * 126.46257 * 7 6 4 9 9 C 1.53043 * 109.30969 * 54.56379 * 8 7 6 10 10 C 1.53036 * 109.53931 * 298.63089 * 9 8 7 11 11 C 1.46924 * 120.63136 * 185.92165 * 6 4 3 12 12 H 1.09004 * 109.58989 * 113.67481 * 11 6 4 13 13 C 1.53004 * 109.58631 * 353.39434 * 11 6 4 14 14 N 1.46501 * 109.46733 * 69.71187 * 13 11 6 15 15 C 1.34782 * 119.99467 * 174.69982 * 14 13 11 16 16 O 1.21276 * 120.00319 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99541 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.46680 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99926 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99790 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00169 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00177 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99864 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46742 * 89.99997 * 23 21 19 25 25 H 1.48498 * 109.47000 * 209.99402 * 23 21 19 26 26 H 1.48495 * 109.46970 * 330.00116 * 23 21 19 27 27 H 1.08999 * 109.47015 * 59.99870 * 1 2 3 28 28 H 1.09001 * 109.47576 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47159 * 300.00093 * 1 2 3 30 30 H 1.09000 * 109.46733 * 239.99741 * 2 1 3 31 31 H 1.08999 * 109.47015 * 120.00130 * 2 1 3 32 32 H 1.09000 * 109.47505 * 60.00214 * 3 2 1 33 33 H 1.08999 * 109.47258 * 299.99981 * 3 2 1 34 34 H 1.09006 * 109.59052 * 6.60742 * 7 6 4 35 35 H 1.08995 * 109.58640 * 246.32487 * 7 6 4 36 36 H 1.08994 * 109.50254 * 294.60966 * 8 7 6 37 37 H 1.09000 * 109.49294 * 174.50999 * 8 7 6 38 38 H 1.09002 * 109.45627 * 178.60780 * 9 8 7 39 39 H 1.08995 * 109.44721 * 58.64708 * 9 8 7 40 40 H 1.09007 * 109.49745 * 301.41886 * 10 9 8 41 41 H 1.09000 * 109.52948 * 181.33615 * 10 9 8 42 42 H 1.08996 * 109.47273 * 189.70756 * 13 11 6 43 43 H 1.09002 * 109.46864 * 309.71221 * 13 11 6 44 44 H 0.96994 * 120.00247 * 354.68684 * 14 13 11 45 45 H 1.08994 * 109.47089 * 299.98894 * 17 15 14 46 46 H 1.08996 * 109.47196 * 59.99600 * 17 15 14 47 47 H 0.96995 * 120.00631 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2209 2.6096 -0.0002 7 6 3.5071 3.8870 0.1352 8 6 4.1227 4.6788 1.2932 9 6 5.6291 4.8218 1.0640 10 6 6.2755 3.4351 1.0296 11 6 5.6842 2.6292 -0.1313 12 1 5.9602 3.0949 -1.0774 13 6 6.2222 1.1975 -0.0882 14 7 5.8333 0.4927 -1.3123 15 6 6.2880 -0.7545 -1.5450 16 8 7.0194 -1.2932 -0.7415 17 6 5.8875 -1.4798 -2.8039 18 16 6.6543 -3.1192 -2.8256 19 6 6.0343 -3.7267 -4.3590 20 1 5.3843 -3.1093 -4.9612 21 6 6.3822 -4.9982 -4.7934 22 7 5.9195 -5.4519 -5.9391 23 14 7.5072 -6.0658 -3.7520 24 1 6.6904 -6.8792 -2.8157 25 1 8.2919 -6.9660 -4.6346 26 1 8.4332 -5.2008 -2.9778 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.4538 3.6970 0.3417 35 1 3.6010 4.4578 -0.7886 36 1 3.9458 4.1504 2.2299 37 1 3.6665 5.6676 1.3408 38 1 6.0657 5.4061 1.8740 39 1 5.8053 5.3283 0.1151 40 1 6.0782 2.9183 1.9689 41 1 7.3516 3.5381 0.8901 42 1 7.3093 1.2200 -0.0117 43 1 5.8077 0.6795 0.7767 44 1 5.2486 0.9236 -1.9550 45 1 4.8031 -1.5852 -2.8331 46 1 6.2209 -0.9116 -3.6723 47 1 6.1623 -6.3406 -6.2425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081837431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:33 Heat of formation + Delta-G solvation = -59.961236 kcal Electronic energy + Delta-G solvation = -26740.651738 eV Core-core repulsion = 23050.235282 eV Total energy + Delta-G solvation = -3690.416456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05372 -38.64965 -37.79285 -35.17396 -33.97955 -33.23367 -32.35232 -31.84718 -29.31022 -28.27904 -26.40780 -25.51140 -24.64819 -23.01190 -21.69029 -21.04366 -20.15207 -19.20103 -17.80964 -17.14020 -16.40048 -16.20036 -15.99329 -15.67459 -15.09100 -14.88012 -14.86952 -14.76482 -14.31003 -14.08786 -13.76633 -13.51436 -13.27440 -13.17138 -12.99522 -12.77338 -12.71208 -12.48858 -12.26668 -11.88625 -11.67577 -11.58597 -11.43113 -11.30805 -11.17876 -11.11767 -11.01400 -10.92676 -10.88756 -10.46239 -9.76783 -9.33260 -9.13132 -8.99980 -8.91391 -8.36072 -8.29244 -6.78682 -6.20635 -3.90094 2.48194 2.63534 2.95198 3.36823 3.40209 3.49859 3.58919 3.86885 4.13124 4.28764 4.41721 4.42507 4.50381 4.64975 4.67458 4.78285 4.80105 4.83422 4.91786 5.01894 5.09719 5.18577 5.21325 5.26440 5.31145 5.38139 5.42088 5.43300 5.51607 5.55606 5.60014 5.61247 5.73189 5.86170 5.91215 5.96646 6.00611 6.08462 6.19509 6.21762 6.37372 6.89587 7.14671 7.94819 8.02948 8.07132 8.50064 8.86377 9.26263 10.88811 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.003111 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.146793 B = 8996.922490 C =10234.134754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.137 4.137 4 C 0.496 3.504 5 O -0.496 6.496 6 N -0.618 5.618 7 C 0.109 3.891 8 C -0.136 4.136 9 C -0.118 4.118 10 C -0.128 4.128 11 C 0.136 3.864 12 H 0.077 0.923 13 C 0.134 3.866 14 N -0.705 5.705 15 C 0.537 3.463 16 O -0.530 6.530 17 C -0.119 4.119 18 S -0.143 6.143 19 C -0.518 4.518 20 H 0.086 0.914 21 C 0.094 3.906 22 N -0.884 5.884 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.389 0.611 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 26.202 14.614 31.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.177 4.177 4 C 0.284 3.716 5 O -0.369 6.369 6 N -0.355 5.355 7 C -0.014 4.014 8 C -0.175 4.175 9 C -0.156 4.156 10 C -0.167 4.167 11 C 0.032 3.968 12 H 0.095 0.905 13 C 0.010 3.990 14 N -0.358 5.358 15 C 0.323 3.677 16 O -0.406 6.406 17 C -0.270 4.270 18 S 0.084 5.916 19 C -0.666 4.666 20 H 0.104 0.896 21 C -0.114 4.114 22 N -0.521 5.521 23 Si 0.682 3.318 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.159 1.159 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.222 0.778 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.261 24.563 15.825 30.108 hybrid contribution -0.905 0.452 -1.062 1.467 sum -8.166 25.015 14.762 30.172 Atomic orbital electron populations 1.21779 0.95584 1.02143 1.01378 1.21299 0.95186 0.94455 1.04008 1.21764 0.92079 1.00247 1.03647 1.20873 0.90342 0.83423 0.76981 1.90963 1.68342 1.31235 1.46351 1.48171 1.06561 1.06259 1.74510 1.21718 0.96542 0.84424 0.98704 1.21930 0.96310 1.00416 0.98804 1.21498 0.95081 0.96717 1.02314 1.21891 1.00454 0.95667 0.98685 1.21522 0.79558 0.96797 0.98882 0.90533 1.21397 0.98034 0.89022 0.90579 1.45690 1.51550 1.16303 1.22240 1.19969 0.79662 0.80836 0.87259 1.90654 1.36500 1.65972 1.47449 1.23229 1.04725 1.01175 0.97866 1.84748 1.65302 1.11119 1.30472 1.22355 1.35236 1.04422 1.04567 0.89556 1.24711 0.95294 0.96751 0.94620 1.69943 1.43809 1.18449 1.19878 0.86723 0.82281 0.81780 0.81010 1.19252 1.20067 1.15882 0.92775 0.92247 0.93006 0.90852 0.91239 0.89473 0.89265 0.89615 0.91338 0.91394 0.90652 0.91417 0.91622 0.91040 0.90289 0.92138 0.89384 0.77760 0.88930 0.89142 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.83 16 2 C -0.11 -1.10 5.22 -26.73 -0.14 -1.24 16 3 C -0.14 -1.06 4.13 -27.88 -0.12 -1.17 16 4 C 0.50 5.15 7.08 -10.98 -0.08 5.08 16 5 O -0.50 -7.37 9.80 5.56 0.05 -7.32 16 6 N -0.62 -4.93 2.98 -165.18 -0.49 -5.42 16 7 C 0.11 0.52 6.32 -3.69 -0.02 0.50 16 8 C -0.14 -0.58 6.08 -26.61 -0.16 -0.74 16 9 C -0.12 -0.58 5.88 -26.69 -0.16 -0.73 16 10 C -0.13 -0.87 5.36 -26.61 -0.14 -1.02 16 11 C 0.14 1.18 2.92 -67.60 -0.20 0.99 16 12 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 13 C 0.13 1.77 4.29 -4.04 -0.02 1.75 16 14 N -0.71 -10.82 3.22 -60.29 -0.19 -11.02 16 15 C 0.54 10.97 7.57 -10.98 -0.08 10.89 16 16 O -0.53 -12.88 15.86 5.56 0.09 -12.80 16 17 C -0.12 -2.58 6.16 36.01 0.22 -2.36 16 18 S -0.14 -3.88 18.55 -107.50 -1.99 -5.88 16 19 C -0.52 -15.64 10.04 30.94 0.31 -15.33 16 20 H 0.09 2.71 8.03 -52.48 -0.42 2.29 16 21 C 0.09 2.87 5.50 -17.43 -0.10 2.77 16 22 N -0.88 -27.52 13.97 55.49 0.78 -26.75 16 23 Si 0.86 22.71 27.74 -169.99 -4.72 18.00 16 24 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.23 -6.24 6.74 56.52 0.38 -5.86 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.07 0.80 8.10 -51.93 -0.42 0.37 16 32 H 0.09 0.51 7.44 -51.93 -0.39 0.12 16 33 H 0.09 0.55 8.13 -51.93 -0.42 0.13 16 34 H 0.09 0.30 5.97 -51.93 -0.31 -0.01 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 43 H 0.09 1.40 6.28 -51.93 -0.33 1.07 16 44 H 0.39 5.16 7.88 -40.82 -0.32 4.84 16 45 H 0.09 1.94 8.14 -51.92 -0.42 1.52 16 46 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 47 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -37.04 381.73 -9.14 -46.18 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.10 Total: 0.69 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.31 Total: -1.46 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.09 Total: -43.18 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.14 Total: -20.11 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.72 Total: 18.00 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -1.99 Total: -5.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.04 -9.14 -46.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081837431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.783 kcal (2) G-P(sol) polarization free energy of solvation -37.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds