Wall clock time and date at job start Tue Mar 31 2020 15:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47169 * 2 1 4 4 C 1.50706 * 109.47080 * 180.02562 * 3 2 1 5 5 O 1.21277 * 119.99739 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00050 * 180.02562 * 4 3 2 7 7 C 1.46968 * 120.65832 * 6.10103 * 6 4 3 8 8 C 1.53191 * 108.88707 * 126.46257 * 7 6 4 9 9 C 1.53043 * 109.30969 * 54.56379 * 8 7 6 10 10 C 1.53036 * 109.53931 * 298.63089 * 9 8 7 11 11 C 1.46924 * 120.63136 * 185.92165 * 6 4 3 12 12 H 1.09004 * 109.58989 * 113.67481 * 11 6 4 13 13 C 1.53004 * 109.58631 * 353.39434 * 11 6 4 14 14 N 1.46501 * 109.46733 * 69.71187 * 13 11 6 15 15 C 1.34782 * 119.99467 * 174.69982 * 14 13 11 16 16 O 1.21276 * 120.00319 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99541 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.46680 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99926 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99790 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00169 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00177 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99864 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46742 * 89.99997 * 23 21 19 25 25 H 1.48498 * 109.47000 * 209.99402 * 23 21 19 26 26 H 1.48495 * 109.46970 * 330.00116 * 23 21 19 27 27 H 1.08999 * 109.47015 * 59.99870 * 1 2 3 28 28 H 1.09001 * 109.47576 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47159 * 300.00093 * 1 2 3 30 30 H 1.09000 * 109.46733 * 239.99741 * 2 1 3 31 31 H 1.08999 * 109.47015 * 120.00130 * 2 1 3 32 32 H 1.09000 * 109.47505 * 60.00214 * 3 2 1 33 33 H 1.08999 * 109.47258 * 299.99981 * 3 2 1 34 34 H 1.09006 * 109.59052 * 6.60742 * 7 6 4 35 35 H 1.08995 * 109.58640 * 246.32487 * 7 6 4 36 36 H 1.08994 * 109.50254 * 294.60966 * 8 7 6 37 37 H 1.09000 * 109.49294 * 174.50999 * 8 7 6 38 38 H 1.09002 * 109.45627 * 178.60780 * 9 8 7 39 39 H 1.08995 * 109.44721 * 58.64708 * 9 8 7 40 40 H 1.09007 * 109.49745 * 301.41886 * 10 9 8 41 41 H 1.09000 * 109.52948 * 181.33615 * 10 9 8 42 42 H 1.08996 * 109.47273 * 189.70756 * 13 11 6 43 43 H 1.09002 * 109.46864 * 309.71221 * 13 11 6 44 44 H 0.96994 * 120.00247 * 354.68684 * 14 13 11 45 45 H 1.08994 * 109.47089 * 299.98894 * 17 15 14 46 46 H 1.08996 * 109.47196 * 59.99600 * 17 15 14 47 47 H 0.96995 * 120.00631 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2209 2.6096 -0.0002 7 6 3.5071 3.8870 0.1352 8 6 4.1227 4.6788 1.2932 9 6 5.6291 4.8218 1.0640 10 6 6.2755 3.4351 1.0296 11 6 5.6842 2.6292 -0.1313 12 1 5.9602 3.0949 -1.0774 13 6 6.2222 1.1975 -0.0882 14 7 5.8333 0.4927 -1.3123 15 6 6.2880 -0.7545 -1.5450 16 8 7.0194 -1.2932 -0.7415 17 6 5.8875 -1.4798 -2.8039 18 16 6.6543 -3.1192 -2.8256 19 6 6.0343 -3.7267 -4.3590 20 1 5.3843 -3.1093 -4.9612 21 6 6.3822 -4.9982 -4.7934 22 7 5.9195 -5.4519 -5.9391 23 14 7.5072 -6.0658 -3.7520 24 1 6.6904 -6.8792 -2.8157 25 1 8.2919 -6.9660 -4.6346 26 1 8.4332 -5.2008 -2.9778 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.4538 3.6970 0.3417 35 1 3.6010 4.4578 -0.7886 36 1 3.9458 4.1504 2.2299 37 1 3.6665 5.6676 1.3408 38 1 6.0657 5.4061 1.8740 39 1 5.8053 5.3283 0.1151 40 1 6.0782 2.9183 1.9689 41 1 7.3516 3.5381 0.8901 42 1 7.3093 1.2200 -0.0117 43 1 5.8077 0.6795 0.7767 44 1 5.2486 0.9236 -1.9550 45 1 4.8031 -1.5852 -2.8331 46 1 6.2209 -0.9116 -3.6723 47 1 6.1623 -6.3406 -6.2425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081837431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:32 Heat of formation + Delta-G solvation = -84.761983 kcal Electronic energy + Delta-G solvation = -26741.727179 eV Core-core repulsion = 23050.235282 eV Total energy + Delta-G solvation = -3691.491897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.88594 -40.17384 -38.46767 -36.18840 -34.98229 -34.69338 -33.83044 -32.82079 -30.79750 -28.95806 -27.91685 -27.21258 -25.32883 -23.73073 -22.38783 -21.94039 -21.36656 -20.08756 -19.74086 -18.16718 -17.55828 -17.29445 -17.09308 -17.00548 -16.69114 -16.41654 -15.76262 -15.47400 -15.27159 -15.20672 -14.96311 -14.69564 -14.68166 -14.22658 -14.07859 -13.83215 -13.67489 -13.39350 -13.33726 -13.15058 -13.02450 -12.86618 -12.65142 -12.57962 -12.18059 -12.02418 -11.90214 -11.84384 -11.65673 -11.60165 -11.45863 -11.19202 -10.93176 -10.55826 -10.11885 -9.97970 -9.39106 -9.01375 -8.53734 -6.24419 0.97447 1.29400 1.45432 1.54184 1.62712 1.80854 1.98614 2.23447 2.36593 2.72732 2.84133 3.44365 3.81623 3.85053 3.87687 4.00408 4.01686 4.10921 4.15491 4.19136 4.21554 4.28376 4.40622 4.49339 4.54593 4.66383 4.68907 4.71683 4.77824 4.83010 4.88549 4.96505 5.03394 5.09598 5.20193 5.24487 5.25214 5.27450 5.44111 5.47996 5.54895 5.66966 5.68780 6.08204 6.46823 6.54184 6.91322 7.30853 7.31895 8.59021 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.003111 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.146793 B = 8996.922490 C =10234.134754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.128 4.128 4 C 0.490 3.510 5 O -0.553 6.553 6 N -0.612 5.612 7 C 0.103 3.897 8 C -0.133 4.133 9 C -0.115 4.115 10 C -0.125 4.125 11 C 0.142 3.858 12 H 0.094 0.906 13 C 0.136 3.864 14 N -0.677 5.677 15 C 0.537 3.463 16 O -0.576 6.576 17 C -0.105 4.105 18 S -0.175 6.175 19 C -0.529 4.529 20 H 0.060 0.940 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.263 1.263 25 H -0.254 1.254 26 H -0.239 1.239 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.402 0.598 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.674 29.340 15.319 34.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.167 4.167 4 C 0.279 3.721 5 O -0.431 6.431 6 N -0.347 5.347 7 C -0.018 4.018 8 C -0.171 4.171 9 C -0.153 4.153 10 C -0.164 4.164 11 C 0.039 3.961 12 H 0.111 0.889 13 C 0.013 3.987 14 N -0.327 5.327 15 C 0.322 3.678 16 O -0.456 6.456 17 C -0.256 4.256 18 S 0.052 5.948 19 C -0.677 4.677 20 H 0.078 0.922 21 C -0.159 4.159 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.188 1.188 25 H -0.178 1.178 26 H -0.163 1.163 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.237 0.763 45 H 0.117 0.883 46 H 0.127 0.873 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.179 27.797 16.516 33.352 hybrid contribution -0.727 -0.357 -1.255 1.494 sum -8.906 27.440 15.261 32.637 Atomic orbital electron populations 1.21739 0.93728 1.01967 1.02886 1.21236 0.96744 0.95720 1.01261 1.21744 0.89936 0.98953 1.06089 1.21415 0.91540 0.83208 0.75926 1.90951 1.69532 1.33252 1.49349 1.48272 1.06245 1.07043 1.73140 1.22047 0.97193 0.82735 0.99858 1.21929 0.95847 1.01372 0.97987 1.21500 0.95443 0.95059 1.03255 1.21878 1.00931 0.96614 0.96942 1.21464 0.80284 0.93733 1.00634 0.88859 1.21436 0.97591 0.91300 0.88407 1.45481 1.49899 1.14500 1.22869 1.19740 0.79641 0.82122 0.86317 1.90631 1.38960 1.67358 1.48646 1.23193 1.04529 0.98158 0.99681 1.84682 1.66147 1.15230 1.28739 1.22451 1.35040 1.04641 1.05530 0.92190 1.25552 0.96622 0.97936 0.95756 1.70008 1.44924 1.19354 1.21179 0.85864 0.80570 0.80205 0.79708 1.18780 1.17820 1.16275 0.91489 0.93383 0.91148 0.94012 0.93733 0.86697 0.86730 0.87748 0.89572 0.92389 0.88346 0.90611 0.90557 0.92478 0.89855 0.92893 0.92128 0.76280 0.88303 0.87284 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.39 16 2 C -0.11 -2.20 5.22 30.59 0.16 -2.04 16 3 C -0.13 -1.68 4.13 29.85 0.12 -1.56 16 4 C 0.49 9.64 7.08 87.66 0.62 10.26 16 5 O -0.55 -16.87 9.80 -3.02 -0.03 -16.90 16 6 N -0.61 -8.32 2.98 -794.92 -2.37 -10.69 16 7 C 0.10 0.56 6.32 86.35 0.55 1.10 16 8 C -0.13 -0.62 6.08 30.67 0.19 -0.43 16 9 C -0.12 -0.73 5.88 30.62 0.18 -0.55 16 10 C -0.12 -1.48 5.36 30.67 0.16 -1.32 16 11 C 0.14 2.24 2.92 44.98 0.13 2.37 16 12 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 13 C 0.14 3.63 4.29 86.38 0.37 4.00 16 14 N -0.68 -20.78 3.22 -463.04 -1.49 -22.27 16 15 C 0.54 22.34 7.57 87.66 0.66 23.00 16 16 O -0.58 -28.88 15.86 -3.02 -0.05 -28.93 16 17 C -0.10 -4.60 6.16 71.24 0.44 -4.16 16 18 S -0.17 -9.66 18.55 -56.49 -1.05 -10.71 16 19 C -0.53 -32.67 10.04 67.95 0.68 -31.98 16 20 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 21 C 0.05 2.86 5.50 84.86 0.47 3.33 16 22 N -0.92 -57.68 13.97 21.65 0.30 -57.38 16 23 Si 0.91 47.22 27.74 68.60 1.90 49.12 16 24 H -0.26 -13.29 7.11 99.48 0.71 -12.59 16 25 H -0.25 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.24 -12.41 6.74 99.48 0.67 -11.74 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 32 H 0.11 0.91 7.44 -2.39 -0.02 0.89 16 33 H 0.11 0.98 8.13 -2.39 -0.02 0.96 16 34 H 0.10 0.22 5.97 -2.38 -0.01 0.21 16 35 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.05 1.49 8.11 -2.39 -0.02 1.47 16 43 H 0.06 2.02 6.28 -2.39 -0.01 2.00 16 44 H 0.40 10.29 7.88 -92.71 -0.73 9.56 16 45 H 0.10 4.21 8.14 -2.40 -0.02 4.19 16 46 H 0.11 4.36 8.14 -2.40 -0.02 4.34 16 47 H 0.28 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -84.11 381.73 2.85 -81.26 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.18 Total: 15.87 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 5.45 Total: 0.63 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -3.56 Total: -90.34 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -0.08 Total: -45.83 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.90 Total: 49.12 kcal Atomic # 16 Polarization: -9.66 SS G_CDS: -1.05 Total: -10.71 kcal Total: -84.11 2.85 -81.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081837431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.504 kcal (2) G-P(sol) polarization free energy of solvation -84.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds