Wall clock time and date at job start Tue Mar 31 2020 15:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47297 * 2 1 4 4 C 1.50699 * 109.46890 * 119.99919 * 2 1 3 5 5 O 1.21288 * 119.99797 * 341.38637 * 4 2 1 6 6 N 1.34774 * 120.00174 * 161.37902 * 4 2 1 7 7 C 1.46956 * 120.65532 * 6.15401 * 6 4 2 8 8 C 1.53197 * 108.88805 * 126.46007 * 7 6 4 9 9 C 1.53039 * 109.31391 * 54.56228 * 8 7 6 10 10 C 1.53046 * 109.53499 * 298.63523 * 9 8 7 11 11 C 1.46929 * 120.63045 * 185.97028 * 6 4 2 12 12 H 1.09000 * 109.58615 * 113.68301 * 11 6 4 13 13 C 1.52998 * 109.58721 * 353.39734 * 11 6 4 14 14 N 1.46500 * 109.46971 * 68.52459 * 13 11 6 15 15 C 1.34775 * 120.00093 * 175.04591 * 14 13 11 16 16 O 1.21281 * 119.99931 * 0.28128 * 15 14 13 17 17 C 1.50693 * 120.00344 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47652 * 180.02562 * 17 15 14 19 19 C 1.76195 * 100.00528 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99498 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00332 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99503 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99966 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47202 * 60.00340 * 23 21 19 25 25 H 1.48497 * 109.47099 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47200 * 300.00423 * 23 21 19 27 27 H 1.08998 * 109.47274 * 300.00614 * 1 2 3 28 28 H 1.09006 * 109.46593 * 60.00178 * 1 2 3 29 29 H 1.08997 * 109.47755 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47274 * 239.99386 * 2 1 3 31 31 H 1.08998 * 109.47509 * 64.60033 * 3 2 1 32 32 H 1.09001 * 109.47034 * 184.59946 * 3 2 1 33 33 H 1.09002 * 109.47276 * 304.59553 * 3 2 1 34 34 H 1.09006 * 109.59427 * 6.60174 * 7 6 4 35 35 H 1.08996 * 109.47054 * 246.24741 * 7 6 4 36 36 H 1.09001 * 109.49407 * 294.60827 * 8 7 6 37 37 H 1.09006 * 109.49585 * 174.51155 * 8 7 6 38 38 H 1.08993 * 109.46167 * 178.61553 * 9 8 7 39 39 H 1.08998 * 109.45920 * 58.65190 * 9 8 7 40 40 H 1.09002 * 109.49462 * 301.41028 * 10 9 8 41 41 H 1.08993 * 109.49770 * 181.31636 * 10 9 8 42 42 H 1.08997 * 109.47231 * 308.52676 * 13 11 6 43 43 H 1.08998 * 109.47264 * 188.52362 * 13 11 6 44 44 H 0.96997 * 119.99818 * 355.05158 * 14 13 11 45 45 H 1.09000 * 109.47369 * 300.00838 * 17 15 14 46 46 H 1.09009 * 109.47019 * 60.00878 * 17 15 14 47 47 H 0.97001 * 119.99679 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2958 -0.8718 2.1806 6 7 3.2997 -1.1665 1.2751 7 6 4.2439 -0.8631 0.1907 8 6 5.5053 -0.2357 0.7924 9 6 6.0661 -1.1633 1.8727 10 6 5.0321 -1.3337 2.9881 11 6 3.7653 -1.9735 2.4113 12 1 3.9884 -2.9856 2.0735 13 6 2.6785 -2.0197 3.4871 14 7 1.5386 -2.7985 2.9967 15 6 0.4991 -3.0593 3.8138 16 8 0.5049 -2.6450 4.9537 17 6 -0.6737 -3.8598 3.3092 18 16 -1.8967 -4.0377 4.6316 19 6 -3.1209 -4.9859 3.7908 20 1 -2.9687 -5.2722 2.7606 21 6 -4.2803 -5.3657 4.4527 22 7 -4.4654 -5.0170 5.7084 23 14 -5.5777 -6.3714 3.5615 24 1 -4.9848 -7.6562 3.1107 25 1 -6.7108 -6.6446 4.4817 26 1 -6.0693 -5.6128 2.3834 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.7456 1.9320 0.9283 32 1 3.1269 1.4435 -0.0824 33 1 1.6110 1.9795 -0.8460 34 1 3.7854 -0.1633 -0.5081 35 1 4.5066 -1.7836 -0.3305 36 1 5.2563 0.7290 1.2346 37 1 6.2511 -0.0961 0.0097 38 1 6.9774 -0.7309 2.2854 39 1 6.2916 -2.1358 1.4350 40 1 4.7877 -0.3587 3.4096 41 1 5.4410 -1.9757 3.7683 42 1 2.3529 -1.0056 3.7186 43 1 3.0777 -2.4874 4.3871 44 1 1.5321 -3.1264 2.0838 45 1 -1.1273 -3.3454 2.4620 46 1 -0.3321 -4.8461 2.9949 47 1 -5.2758 -5.2821 6.1709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081890301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:37 Heat of formation + Delta-G solvation = -53.909081 kcal Electronic energy + Delta-G solvation = -27035.307723 eV Core-core repulsion = 23345.153708 eV Total energy + Delta-G solvation = -3690.154015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.11878 -38.55669 -37.77325 -35.45000 -33.80625 -32.97684 -32.33178 -31.71034 -29.16969 -27.39682 -26.71503 -25.39968 -24.64176 -23.82699 -21.90945 -21.01773 -20.01581 -18.86336 -17.81956 -17.29847 -16.37281 -15.94116 -15.82656 -15.26057 -15.07081 -15.00081 -14.75375 -14.72070 -14.23739 -13.89507 -13.87414 -13.46501 -13.16801 -12.94323 -12.80929 -12.72454 -12.44531 -12.38836 -12.33168 -12.04259 -11.61539 -11.48293 -11.42639 -11.31638 -11.24385 -11.07370 -10.97099 -10.95108 -10.92812 -10.67906 -9.70856 -9.22800 -9.02887 -8.96773 -8.92185 -8.17199 -8.08456 -6.36148 -6.11708 -3.80321 2.52760 2.68078 3.21962 3.29155 3.33476 3.43179 3.52225 3.95638 4.14202 4.30619 4.31953 4.45915 4.47621 4.61140 4.70036 4.76889 4.80734 4.86384 5.05082 5.10539 5.12919 5.22673 5.30527 5.36359 5.38592 5.44467 5.45848 5.50394 5.60677 5.62866 5.67741 5.70818 5.73133 5.85680 5.90669 5.93760 6.09649 6.13942 6.22898 6.33019 6.42273 6.99831 7.19721 7.68391 8.06264 8.12613 8.44749 9.00226 9.33012 10.95732 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.002938 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.380036 B = 9527.726581 C =10405.365763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.499 3.501 5 O -0.491 6.491 6 N -0.616 5.616 7 C 0.105 3.895 8 C -0.136 4.136 9 C -0.118 4.118 10 C -0.128 4.128 11 C 0.136 3.864 12 H 0.076 0.924 13 C 0.135 3.865 14 N -0.706 5.706 15 C 0.538 3.462 16 O -0.528 6.528 17 C -0.148 4.148 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.070 0.930 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.917 3.083 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.275 1.275 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.388 0.612 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.439 11.099 -16.656 30.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C -0.202 4.202 4 C 0.286 3.714 5 O -0.363 6.363 6 N -0.353 5.353 7 C -0.018 4.018 8 C -0.174 4.174 9 C -0.156 4.156 10 C -0.167 4.167 11 C 0.032 3.968 12 H 0.094 0.906 13 C 0.011 3.989 14 N -0.359 5.359 15 C 0.324 3.676 16 O -0.404 6.404 17 C -0.299 4.299 18 S 0.166 5.834 19 C -0.682 4.682 20 H 0.088 0.912 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.221 0.779 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.904 11.701 -14.050 29.307 hybrid contribution -0.684 -1.270 -2.540 2.921 sum 22.219 10.432 -16.590 29.627 Atomic orbital electron populations 1.21641 0.92132 1.03026 1.02480 1.21315 0.98505 0.97130 0.96475 1.21839 1.00894 0.94321 1.03135 1.20799 0.81168 0.79543 0.89865 1.90988 1.55995 1.53637 1.35714 1.48137 1.11009 1.54107 1.22040 1.21822 0.89989 1.00632 0.89379 1.21932 0.96988 0.99514 0.98998 1.21495 0.98123 0.99951 0.96004 1.21892 0.94420 1.02119 0.98262 1.21527 0.94354 0.94294 0.86594 0.90573 1.21352 0.84515 0.98667 0.94367 1.45738 1.19743 1.55469 1.14926 1.19987 0.82658 0.79554 0.85386 1.90657 1.79123 1.51792 1.18813 1.23475 0.99036 1.01321 1.06082 1.85359 1.14051 1.70556 1.13389 1.22851 1.05698 1.39064 1.00606 0.91167 1.24981 0.97600 0.96068 0.94981 1.70022 1.26896 1.43861 1.09628 0.86246 0.80107 0.80057 0.79199 1.20009 1.20855 1.20005 0.91297 0.92195 0.92069 0.89459 0.91878 0.92178 0.91461 0.89215 0.91482 0.91370 0.90703 0.91438 0.91658 0.91030 0.90296 0.89650 0.92147 0.77934 0.89659 0.89959 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.64 37.16 0.32 -1.07 16 2 C -0.11 -0.95 2.39 -91.77 -0.22 -1.17 16 3 C -0.14 -0.98 8.88 37.16 0.33 -0.65 16 4 C 0.50 5.49 6.23 -10.99 -0.07 5.43 16 5 O -0.49 -7.65 9.75 5.55 0.05 -7.60 16 6 N -0.62 -5.23 2.98 -165.19 -0.49 -5.73 16 7 C 0.10 0.55 5.81 -3.69 -0.02 0.53 16 8 C -0.14 -0.62 6.08 -26.61 -0.16 -0.78 16 9 C -0.12 -0.61 5.88 -26.69 -0.16 -0.77 16 10 C -0.13 -0.93 5.37 -26.61 -0.14 -1.07 16 11 C 0.14 1.25 2.93 -67.60 -0.20 1.06 16 12 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 13 C 0.14 1.88 4.28 -4.04 -0.02 1.86 16 14 N -0.71 -11.40 3.18 -60.30 -0.19 -11.59 16 15 C 0.54 11.57 7.52 -10.99 -0.08 11.49 16 16 O -0.53 -13.53 15.86 5.56 0.09 -13.44 16 17 C -0.15 -3.36 6.16 36.00 0.22 -3.14 16 18 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 19 C -0.53 -15.98 9.50 30.94 0.29 -15.68 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 22 N -0.87 -27.18 13.22 55.49 0.73 -26.44 16 23 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.07 0.86 7.91 -51.93 -0.41 0.45 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.56 7.20 -51.93 -0.37 0.19 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.32 6.24 -51.93 -0.32 -0.01 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.38 4.36 -51.93 -0.23 0.15 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.42 6.38 -51.93 -0.33 1.09 16 43 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 44 H 0.39 5.43 7.80 -40.82 -0.32 5.12 16 45 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 46 H 0.08 1.72 8.14 -51.91 -0.42 1.29 16 47 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -37.51 379.72 -9.19 -46.69 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.87 Total: 1.11 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 0.00 Total: -1.90 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.05 Total: -43.76 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: 0.14 Total: -21.04 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.51 -9.19 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081890301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.215 kcal (2) G-P(sol) polarization free energy of solvation -37.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds