Wall clock time and date at job start Tue Mar 31 2020 15:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47297 * 2 1 4 4 C 1.50699 * 109.46890 * 119.99919 * 2 1 3 5 5 O 1.21288 * 119.99797 * 341.38637 * 4 2 1 6 6 N 1.34774 * 120.00174 * 161.37902 * 4 2 1 7 7 C 1.46956 * 120.65532 * 6.15401 * 6 4 2 8 8 C 1.53197 * 108.88805 * 126.46007 * 7 6 4 9 9 C 1.53039 * 109.31391 * 54.56228 * 8 7 6 10 10 C 1.53046 * 109.53499 * 298.63523 * 9 8 7 11 11 C 1.46929 * 120.63045 * 185.97028 * 6 4 2 12 12 H 1.09000 * 109.58615 * 113.68301 * 11 6 4 13 13 C 1.52998 * 109.58721 * 353.39734 * 11 6 4 14 14 N 1.46500 * 109.46971 * 68.52459 * 13 11 6 15 15 C 1.34775 * 120.00093 * 175.04591 * 14 13 11 16 16 O 1.21281 * 119.99931 * 0.28128 * 15 14 13 17 17 C 1.50693 * 120.00344 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47652 * 180.02562 * 17 15 14 19 19 C 1.76195 * 100.00528 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99498 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00332 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99503 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99966 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47202 * 60.00340 * 23 21 19 25 25 H 1.48497 * 109.47099 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47200 * 300.00423 * 23 21 19 27 27 H 1.08998 * 109.47274 * 300.00614 * 1 2 3 28 28 H 1.09006 * 109.46593 * 60.00178 * 1 2 3 29 29 H 1.08997 * 109.47755 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47274 * 239.99386 * 2 1 3 31 31 H 1.08998 * 109.47509 * 64.60033 * 3 2 1 32 32 H 1.09001 * 109.47034 * 184.59946 * 3 2 1 33 33 H 1.09002 * 109.47276 * 304.59553 * 3 2 1 34 34 H 1.09006 * 109.59427 * 6.60174 * 7 6 4 35 35 H 1.08996 * 109.47054 * 246.24741 * 7 6 4 36 36 H 1.09001 * 109.49407 * 294.60827 * 8 7 6 37 37 H 1.09006 * 109.49585 * 174.51155 * 8 7 6 38 38 H 1.08993 * 109.46167 * 178.61553 * 9 8 7 39 39 H 1.08998 * 109.45920 * 58.65190 * 9 8 7 40 40 H 1.09002 * 109.49462 * 301.41028 * 10 9 8 41 41 H 1.08993 * 109.49770 * 181.31636 * 10 9 8 42 42 H 1.08997 * 109.47231 * 308.52676 * 13 11 6 43 43 H 1.08998 * 109.47264 * 188.52362 * 13 11 6 44 44 H 0.96997 * 119.99818 * 355.05158 * 14 13 11 45 45 H 1.09000 * 109.47369 * 300.00838 * 17 15 14 46 46 H 1.09009 * 109.47019 * 60.00878 * 17 15 14 47 47 H 0.97001 * 119.99679 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2958 -0.8718 2.1806 6 7 3.2997 -1.1665 1.2751 7 6 4.2439 -0.8631 0.1907 8 6 5.5053 -0.2357 0.7924 9 6 6.0661 -1.1633 1.8727 10 6 5.0321 -1.3337 2.9881 11 6 3.7653 -1.9735 2.4113 12 1 3.9884 -2.9856 2.0735 13 6 2.6785 -2.0197 3.4871 14 7 1.5386 -2.7985 2.9967 15 6 0.4991 -3.0593 3.8138 16 8 0.5049 -2.6450 4.9537 17 6 -0.6737 -3.8598 3.3092 18 16 -1.8967 -4.0377 4.6316 19 6 -3.1209 -4.9859 3.7908 20 1 -2.9687 -5.2722 2.7606 21 6 -4.2803 -5.3657 4.4527 22 7 -4.4654 -5.0170 5.7084 23 14 -5.5777 -6.3714 3.5615 24 1 -4.9848 -7.6562 3.1107 25 1 -6.7108 -6.6446 4.4817 26 1 -6.0693 -5.6128 2.3834 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.7456 1.9320 0.9283 32 1 3.1269 1.4435 -0.0824 33 1 1.6110 1.9795 -0.8460 34 1 3.7854 -0.1633 -0.5081 35 1 4.5066 -1.7836 -0.3305 36 1 5.2563 0.7290 1.2346 37 1 6.2511 -0.0961 0.0097 38 1 6.9774 -0.7309 2.2854 39 1 6.2916 -2.1358 1.4350 40 1 4.7877 -0.3587 3.4096 41 1 5.4410 -1.9757 3.7683 42 1 2.3529 -1.0056 3.7186 43 1 3.0777 -2.4874 4.3871 44 1 1.5321 -3.1264 2.0838 45 1 -1.1273 -3.3454 2.4620 46 1 -0.3321 -4.8461 2.9949 47 1 -5.2758 -5.2821 6.1709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081890301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:36 Heat of formation + Delta-G solvation = -79.501067 kcal Electronic energy + Delta-G solvation = -27036.417475 eV Core-core repulsion = 23345.153708 eV Total energy + Delta-G solvation = -3691.263767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.98864 -40.16544 -38.48722 -36.45787 -34.92705 -34.59725 -33.62634 -32.70178 -30.74138 -28.09571 -27.83781 -27.44810 -25.50816 -24.48137 -22.68941 -21.92126 -21.30781 -19.94517 -19.51512 -18.32265 -17.53774 -17.23114 -17.06907 -16.89258 -16.43669 -16.16851 -15.75521 -15.58939 -15.38556 -15.18479 -14.72409 -14.54152 -14.43785 -14.25013 -13.92301 -13.71484 -13.61378 -13.28816 -13.18496 -13.07690 -13.03451 -12.87217 -12.77069 -12.62488 -12.17796 -12.09177 -11.96161 -11.86711 -11.75320 -11.59093 -11.44678 -11.14131 -10.87730 -10.29750 -10.05028 -9.98186 -9.36140 -8.68345 -8.35224 -6.14268 1.25929 1.42944 1.45552 1.55863 1.63763 1.83558 1.97905 2.26631 2.42674 2.97989 3.32735 3.41335 3.74470 3.85825 3.91097 3.96362 4.05159 4.10166 4.14892 4.20424 4.24399 4.28928 4.44628 4.46010 4.51793 4.65495 4.68477 4.72056 4.79741 4.88819 4.92552 4.94925 5.01274 5.02082 5.11333 5.20363 5.23792 5.32211 5.33845 5.38925 5.48735 5.56858 5.67548 6.18212 6.46463 6.58114 7.04613 7.30853 7.37568 8.74220 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.002938 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.380036 B = 9527.726581 C =10405.365763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C -0.139 4.139 4 C 0.493 3.507 5 O -0.550 6.550 6 N -0.610 5.610 7 C 0.098 3.902 8 C -0.133 4.133 9 C -0.114 4.114 10 C -0.125 4.125 11 C 0.143 3.857 12 H 0.095 0.905 13 C 0.137 3.863 14 N -0.676 5.676 15 C 0.535 3.465 16 O -0.579 6.579 17 C -0.122 4.122 18 S -0.150 6.150 19 C -0.549 4.549 20 H 0.080 0.920 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.002 2.998 24 H -0.260 1.260 25 H -0.276 1.276 26 H -0.262 1.262 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.120 0.880 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.401 0.599 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.442 10.502 -20.703 34.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.197 4.197 4 C 0.282 3.718 5 O -0.427 6.427 6 N -0.345 5.345 7 C -0.023 4.023 8 C -0.171 4.171 9 C -0.152 4.152 10 C -0.164 4.164 11 C 0.039 3.961 12 H 0.113 0.887 13 C 0.014 3.986 14 N -0.327 5.327 15 C 0.321 3.679 16 O -0.460 6.460 17 C -0.273 4.273 18 S 0.077 5.923 19 C -0.697 4.697 20 H 0.098 0.902 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.823 3.177 24 H -0.184 1.184 25 H -0.201 1.201 26 H -0.187 1.187 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.138 0.862 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.236 0.764 45 H 0.113 0.887 46 H 0.123 0.877 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 24.997 11.114 -18.177 32.845 hybrid contribution -1.168 -0.994 -1.322 2.025 sum 23.829 10.120 -19.499 32.410 Atomic orbital electron populations 1.21619 0.93929 1.01671 1.01970 1.21334 0.96934 0.98232 0.96237 1.21824 1.02287 0.92954 1.02608 1.21366 0.81511 0.78984 0.89954 1.90978 1.57651 1.56325 1.37790 1.48245 1.10834 1.52938 1.22442 1.22156 0.89503 1.02139 0.88480 1.21937 0.97120 0.98676 0.99378 1.21494 0.97473 1.00904 0.95282 1.21883 0.94018 1.01125 0.99366 1.21469 0.93126 0.95785 0.85681 0.88716 1.21388 0.84683 0.96384 0.96159 1.45490 1.18694 1.53802 1.14667 1.19842 0.83444 0.79450 0.85194 1.90633 1.80235 1.54077 1.21007 1.23284 0.97672 1.02940 1.03421 1.85558 1.17261 1.71291 1.18211 1.23170 1.06108 1.39338 1.01039 0.90154 1.26193 1.00138 0.97112 0.95811 1.70195 1.27846 1.45160 1.11641 0.84958 0.76443 0.78361 0.77917 1.18449 1.20108 1.18675 0.94612 0.89814 0.93841 0.86180 0.94409 0.90077 0.89620 0.87646 0.89508 0.92340 0.88172 0.90533 0.90470 0.92580 0.89869 0.92615 0.93050 0.76354 0.88708 0.87750 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.64 71.98 0.62 -2.11 16 2 C -0.11 -1.59 2.39 -11.54 -0.03 -1.61 16 3 C -0.14 -1.59 8.88 71.98 0.64 -0.95 16 4 C 0.49 10.51 6.23 87.66 0.55 11.05 16 5 O -0.55 -17.89 9.75 -3.05 -0.03 -17.92 16 6 N -0.61 -9.07 2.98 -794.93 -2.37 -11.44 16 7 C 0.10 0.63 5.81 86.36 0.50 1.13 16 8 C -0.13 -0.69 6.08 30.67 0.19 -0.50 16 9 C -0.11 -0.79 5.88 30.62 0.18 -0.61 16 10 C -0.13 -1.62 5.37 30.67 0.16 -1.46 16 11 C 0.14 2.44 2.93 44.97 0.13 2.57 16 12 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 13 C 0.14 3.95 4.28 86.38 0.37 4.32 16 14 N -0.68 -22.20 3.18 -463.08 -1.47 -23.67 16 15 C 0.54 23.93 7.52 87.65 0.66 24.59 16 16 O -0.58 -31.50 15.86 -3.03 -0.05 -31.55 16 17 C -0.12 -5.65 6.16 71.23 0.44 -5.21 16 18 S -0.15 -9.13 20.57 -56.49 -1.16 -10.29 16 19 C -0.55 -33.37 9.50 67.96 0.65 -32.73 16 20 H 0.08 4.55 7.80 -2.91 -0.02 4.52 16 21 C 0.01 0.72 5.49 84.86 0.47 1.18 16 22 N -0.91 -58.51 13.22 21.65 0.29 -58.23 16 23 Si 1.00 45.38 29.55 68.60 2.03 47.40 16 24 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 27 H 0.03 0.95 7.91 -2.39 -0.02 0.93 16 28 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.12 1.05 7.20 -2.39 -0.02 1.03 16 31 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.58 6.24 -2.39 -0.01 0.57 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 0.38 4.36 -2.38 -0.01 0.37 16 35 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.10 0.11 8.14 -2.38 -0.02 0.09 16 38 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.99 6.38 -2.39 -0.02 1.97 16 43 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 44 H 0.40 10.96 7.80 -92.71 -0.72 10.24 16 45 H 0.09 4.19 8.14 -2.40 -0.02 4.17 16 46 H 0.10 4.33 8.14 -2.39 -0.02 4.31 16 47 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -87.99 379.72 2.99 -84.99 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.24 Total: 21.04 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 5.52 Total: -0.35 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -3.55 Total: -93.33 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -0.08 Total: -49.47 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.16 Total: -10.29 kcal Total: -87.99 2.99 -84.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081890301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.492 kcal (2) G-P(sol) polarization free energy of solvation -87.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds