Wall clock time and date at job start Tue Mar 31 2020 15:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46906 * 2 1 4 4 C 1.50703 * 109.46873 * 180.02562 * 3 2 1 5 5 O 1.21277 * 119.99839 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99567 * 180.02562 * 4 3 2 7 7 C 1.46502 * 119.99517 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46976 * 174.98292 * 7 6 4 9 9 H 1.08998 * 109.58181 * 59.66805 * 8 7 6 10 10 C 1.53190 * 109.58317 * 299.24415 * 8 7 6 11 11 C 1.53047 * 109.30934 * 185.57709 * 10 8 7 12 12 C 1.53043 * 109.53773 * 61.36505 * 11 10 8 13 13 C 1.53188 * 109.30999 * 298.63423 * 12 11 10 14 14 N 1.46922 * 109.58599 * 179.97438 * 8 7 6 15 15 C 1.34777 * 120.63292 * 353.41862 * 14 8 7 16 16 O 1.21279 * 119.99857 * 5.43027 * 15 14 8 17 17 C 1.50700 * 120.00178 * 185.42849 * 15 14 8 18 18 S 1.80998 * 109.47286 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00212 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99928 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00410 * 179.97438 * 19 18 17 22 22 N 1.31637 * 119.99422 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00311 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47229 * 60.00160 * 23 21 19 25 25 H 1.48503 * 109.47144 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47040 * 299.99974 * 23 21 19 27 27 H 1.08999 * 109.46968 * 299.99678 * 1 2 3 28 28 H 1.08994 * 109.47160 * 60.00211 * 1 2 3 29 29 H 1.08998 * 109.46884 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46968 * 240.00322 * 2 1 3 31 31 H 1.09004 * 109.47164 * 119.99787 * 2 1 3 32 32 H 1.08999 * 109.47044 * 60.00369 * 3 2 1 33 33 H 1.08994 * 109.47039 * 299.99863 * 3 2 1 34 34 H 0.96998 * 120.00254 * 359.97438 * 6 4 3 35 35 H 1.09000 * 109.47106 * 294.98187 * 7 6 4 36 36 H 1.08997 * 109.47539 * 54.98188 * 7 6 4 37 37 H 1.09001 * 109.50292 * 305.52856 * 10 8 7 38 38 H 1.09001 * 109.49842 * 65.62797 * 10 8 7 39 39 H 1.09004 * 109.46116 * 301.34236 * 11 10 8 40 40 H 1.09000 * 109.44999 * 181.38041 * 11 10 8 41 41 H 1.08998 * 109.49288 * 178.68222 * 12 11 10 42 42 H 1.09001 * 109.52123 * 58.60191 * 12 11 10 43 43 H 1.09000 * 109.59021 * 294.84564 * 13 12 11 44 44 H 1.09008 * 109.70141 * 174.48891 * 13 12 11 45 45 H 1.08999 * 109.47248 * 300.00154 * 17 15 14 46 46 H 1.09002 * 109.46812 * 60.00054 * 17 15 14 47 47 H 0.97003 * 119.99262 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 5.6858 2.6098 -0.0003 8 6 6.1958 4.0468 -0.1259 9 1 5.8287 4.6393 0.7121 10 6 5.7022 4.6536 -1.4431 11 6 6.3279 6.0379 -1.6285 12 6 7.8511 5.9059 -1.6984 13 6 8.3690 5.3133 -0.3841 14 7 7.6651 4.0498 -0.1256 15 6 8.3541 2.9152 0.1074 16 8 7.7655 1.8610 0.2217 17 6 9.8558 2.9564 0.2260 18 16 10.4825 1.2872 0.5374 19 6 12.2101 1.6212 0.6300 20 1 12.5724 2.6309 0.5040 21 6 13.1053 0.5871 0.8659 22 7 12.6636 -0.6434 1.0199 23 14 14.9367 0.9414 0.9648 24 1 15.1966 1.8996 2.0690 25 1 15.6722 -0.3228 1.2223 26 1 15.3973 1.5287 -0.3190 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.7358 3.4498 0.0001 35 1 6.0492 2.1754 0.9311 36 1 6.0492 2.0204 -0.8421 37 1 5.9931 4.0088 -2.2724 38 1 4.6164 4.7457 -1.4168 39 1 6.0569 6.6748 -0.7865 40 1 5.9591 6.4820 -2.5531 41 1 8.2946 6.8893 -1.8539 42 1 8.1222 5.2495 -2.5253 43 1 8.1791 6.0112 0.4313 44 1 9.4399 5.1254 -0.4625 45 1 10.2832 3.3382 -0.7012 46 1 10.1373 3.6097 1.0519 47 1 13.2893 -1.3660 1.1851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081896424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:49 Heat of formation + Delta-G solvation = -105.607231 kcal Electronic energy + Delta-G solvation = -26092.066968 eV Core-core repulsion = 22399.671153 eV Total energy + Delta-G solvation = -3692.395815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.76816 -40.54418 -38.44884 -36.23183 -35.25500 -34.60607 -33.99258 -32.74146 -30.49798 -29.30040 -27.74772 -27.11208 -25.52336 -23.46913 -22.54273 -22.08685 -21.31444 -20.34758 -19.45158 -18.39806 -17.79291 -17.29797 -16.94853 -16.89553 -16.70449 -16.30467 -15.85485 -15.61675 -15.35790 -15.05050 -14.89876 -14.73691 -14.49601 -14.27988 -14.22343 -13.97684 -13.57926 -13.46298 -13.18040 -12.99360 -12.87973 -12.75826 -12.66341 -12.63363 -12.19213 -12.02808 -11.95247 -11.75130 -11.65690 -11.63394 -11.53438 -11.14486 -10.95109 -10.36762 -10.27059 -10.12213 -9.57864 -8.69984 -8.35849 -6.15161 1.22615 1.42523 1.42981 1.52702 1.53219 1.70479 1.88575 2.25802 2.42464 2.97935 3.23050 3.49432 3.71517 3.82992 3.84875 3.93451 4.03351 4.06839 4.12354 4.15898 4.23435 4.26637 4.41395 4.49311 4.57794 4.64854 4.72268 4.74332 4.74915 4.88161 4.92114 4.98892 5.05333 5.07549 5.16689 5.23946 5.24641 5.27781 5.38986 5.41299 5.47070 5.48825 5.62253 6.17468 6.24542 6.61157 7.04564 7.12755 7.37359 8.73241 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012561 B = 0.002939 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.506044 B = 9524.089415 C =11595.177799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.496 3.504 5 O -0.598 6.598 6 N -0.718 5.718 7 C 0.140 3.860 8 C 0.141 3.859 9 H 0.106 0.894 10 C -0.126 4.126 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.099 3.901 14 N -0.603 5.603 15 C 0.525 3.475 16 O -0.550 6.550 17 C -0.121 4.121 18 S -0.158 6.158 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.913 5.913 23 Si 1.001 2.999 24 H -0.260 1.260 25 H -0.280 1.280 26 H -0.261 1.261 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.416 0.584 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.049 0.951 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.052 20.771 -4.666 30.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.165 4.165 4 C 0.284 3.716 5 O -0.478 6.478 6 N -0.374 5.374 7 C 0.016 3.984 8 C 0.038 3.962 9 H 0.123 0.877 10 C -0.165 4.165 11 C -0.149 4.149 12 C -0.173 4.173 13 C -0.022 4.022 14 N -0.339 5.339 15 C 0.313 3.687 16 O -0.428 6.428 17 C -0.272 4.272 18 S 0.069 5.931 19 C -0.692 4.692 20 H 0.102 0.898 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.822 3.178 24 H -0.184 1.184 25 H -0.205 1.205 26 H -0.185 1.185 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.254 0.746 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.068 0.932 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.430 18.332 -4.469 29.311 hybrid contribution 2.010 0.684 -0.017 2.123 sum -20.420 19.016 -4.486 28.261 Atomic orbital electron populations 1.21734 0.92977 1.02342 1.03047 1.21296 0.97225 0.95356 1.01516 1.21756 0.87741 0.99929 1.07044 1.21734 0.92224 0.82973 0.74681 1.90763 1.72126 1.33717 1.51230 1.46126 1.06953 1.09222 1.75096 1.21643 0.79058 0.96089 1.01608 1.21574 0.79110 0.94908 1.00571 0.87671 1.22024 1.02034 0.97526 0.94877 1.21516 0.94072 0.95467 1.03885 1.21948 0.97302 1.02096 0.95906 1.22107 0.97207 0.83637 0.99269 1.48119 1.06140 1.08832 1.70779 1.20249 0.88981 0.83746 0.75736 1.90807 1.69464 1.31813 1.50668 1.23378 0.94842 1.03063 1.05959 1.85729 1.05917 1.07422 1.94014 1.23156 0.91446 0.97609 1.57038 0.89767 1.26192 1.05427 0.93986 0.93771 1.70206 1.37365 1.00814 1.46583 0.84974 0.75394 0.77908 0.79532 1.18429 1.20485 1.18507 0.91301 0.91182 0.92701 0.93539 0.93690 0.85960 0.85761 0.74626 0.93372 0.94242 0.93637 0.87989 0.89476 0.89905 0.87943 0.93165 0.88502 0.89714 0.87664 0.87439 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.91 71.98 0.71 -1.01 16 2 C -0.12 -2.23 5.22 30.60 0.16 -2.07 16 3 C -0.13 -1.89 5.70 29.85 0.17 -1.72 16 4 C 0.50 13.44 7.83 87.66 0.69 14.13 16 5 O -0.60 -24.83 15.98 -3.02 -0.05 -24.88 16 6 N -0.72 -15.75 5.24 -463.05 -2.43 -18.17 16 7 C 0.14 4.34 3.52 86.38 0.30 4.65 16 8 C 0.14 3.00 3.04 44.98 0.14 3.14 16 9 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 10 C -0.13 -1.84 5.12 30.67 0.16 -1.68 16 11 C -0.11 -1.09 5.88 30.62 0.18 -0.91 16 12 C -0.13 -1.75 6.08 30.67 0.19 -1.56 16 13 C 0.10 1.74 6.33 86.36 0.55 2.28 16 14 N -0.60 -15.85 2.97 -795.04 -2.36 -18.21 16 15 C 0.53 20.35 7.63 87.66 0.67 21.02 16 16 O -0.55 -26.71 11.27 -3.03 -0.03 -26.74 16 17 C -0.12 -5.00 4.56 71.24 0.32 -4.68 16 18 S -0.16 -9.15 20.57 -56.49 -1.16 -10.31 16 19 C -0.54 -31.81 9.50 67.95 0.65 -31.17 16 20 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 21 C 0.01 0.63 5.49 84.86 0.47 1.09 16 22 N -0.91 -57.90 13.22 21.65 0.29 -57.62 16 23 Si 1.00 44.39 29.55 68.60 2.03 46.41 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 31 H 0.04 1.07 8.10 -2.38 -0.02 1.05 16 32 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.42 4.68 7.59 -92.71 -0.70 3.97 16 35 H 0.05 1.96 6.45 -2.39 -0.02 1.95 16 36 H 0.04 1.60 7.03 -2.39 -0.02 1.59 16 37 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.88 7.19 -2.39 -0.02 0.86 16 39 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 43 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.62 5.96 -2.38 -0.01 1.61 16 45 H 0.11 3.94 7.47 -2.40 -0.02 3.92 16 46 H 0.11 3.99 8.12 -2.39 -0.02 3.97 16 47 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -91.36 385.76 1.88 -89.48 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.25 Total: 18.52 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 5.35 Total: 1.51 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -4.50 Total: -94.00 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.08 Total: -51.62 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -1.16 Total: -10.31 kcal Total: -91.36 1.88 -89.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081896424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.124 kcal (2) G-P(sol) polarization free energy of solvation -91.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds