Wall clock time and date at job start Tue Mar 31 2020 15:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46979 * 2 1 4 4 H 1.09004 * 109.99988 * 305.03066 * 3 2 1 5 5 C 1.54334 * 109.99095 * 183.99643 * 3 2 1 6 6 H 1.09003 * 110.51446 * 336.97533 * 5 3 2 7 7 N 1.46503 * 111.00462 * 100.12280 * 5 3 2 8 8 C 1.34774 * 119.99565 * 200.23363 * 7 5 3 9 9 O 1.21570 * 120.00546 * 0.02562 * 8 7 5 10 10 C 1.47699 * 119.99567 * 180.02562 * 8 7 5 11 11 C 1.40106 * 120.02698 * 359.72559 * 10 8 7 12 12 C 1.36435 * 120.68852 * 179.74094 * 11 10 8 13 13 C 1.39163 * 120.27224 * 0.55183 * 12 11 10 14 14 O 1.34747 * 133.25239 * 179.75460 * 13 12 11 15 15 C 1.34444 * 110.95072 * 179.97438 * 14 13 12 16 16 C 1.33951 * 110.20238 * 359.97438 * 15 14 13 17 17 C 1.40672 * 119.53848 * 359.70884 * 13 12 11 18 18 C 1.39080 * 120.20572 * 0.02562 * 17 13 12 19 19 C 1.55153 * 103.02023 * 218.66505 * 5 3 2 20 20 C 1.54912 * 101.58360 * 35.30104 * 19 5 3 21 21 N 1.47015 * 109.88624 * 66.12381 * 3 2 1 22 22 C 1.36933 * 125.64947 * 298.39962 * 21 3 2 23 23 H 1.08001 * 120.00046 * 332.38152 * 22 21 3 24 24 C 1.38816 * 120.00403 * 152.38038 * 22 21 3 25 25 N 1.31613 * 120.00274 * 170.70025 * 24 22 21 26 26 Si 1.86804 * 119.99842 * 350.71034 * 24 22 21 27 27 H 1.48495 * 109.47208 * 185.76343 * 26 24 22 28 28 H 1.48500 * 109.46689 * 305.76579 * 26 24 22 29 29 H 1.48506 * 109.47238 * 65.76003 * 26 24 22 30 30 H 1.09001 * 109.47258 * 52.49654 * 1 2 3 31 31 H 1.08997 * 109.47298 * 172.49588 * 1 2 3 32 32 H 1.09002 * 109.47248 * 292.50042 * 1 2 3 33 33 H 1.09002 * 109.47037 * 239.99793 * 2 1 3 34 34 H 1.08993 * 109.46731 * 119.99702 * 2 1 3 35 35 H 0.96995 * 119.99578 * 20.23605 * 7 5 3 36 36 H 1.08005 * 119.65343 * 0.02562 * 11 10 8 37 37 H 1.08001 * 119.86132 * 180.23474 * 12 11 10 38 38 H 1.07998 * 124.89432 * 180.02562 * 15 14 13 39 39 H 1.07999 * 126.92596 * 180.02562 * 16 15 14 40 40 H 1.08009 * 120.32395 * 180.02562 * 18 17 13 41 41 H 1.09002 * 111.00582 * 277.23180 * 19 5 3 42 42 H 1.08995 * 111.00809 * 153.37892 * 19 5 3 43 43 H 1.08999 * 110.37030 * 204.15360 * 20 19 5 44 44 H 1.09001 * 110.36222 * 81.83137 * 20 19 5 45 45 H 0.97006 * 120.00278 * 5.62658 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6099 1.9900 -0.8387 5 6 3.5799 1.4577 -0.1011 6 1 3.9951 0.5129 0.2498 7 7 4.0134 1.7345 -1.4729 8 6 5.2576 1.3983 -1.8671 9 8 6.0199 0.8649 -1.0846 10 6 5.6948 1.6778 -3.2499 11 6 4.8147 2.2872 -4.1539 12 6 5.2062 2.5564 -5.4328 13 6 6.4862 2.2172 -5.8608 14 8 7.1332 2.3522 -7.0350 15 6 8.3827 1.8624 -6.9545 16 6 8.6138 1.3841 -5.7248 17 6 7.3767 1.6001 -4.9635 18 6 6.9798 1.3305 -3.6580 19 6 3.9809 2.6192 0.8463 20 6 2.9165 2.4902 1.9644 21 7 1.6790 2.1005 1.2642 22 6 0.4047 2.3111 1.7189 23 1 -0.4094 2.4126 1.0165 24 6 0.1591 2.3941 3.0826 25 7 -1.0233 2.7763 3.5163 26 14 1.5069 1.9635 4.3022 27 1 0.9562 1.9971 5.6809 28 1 2.0238 0.6027 4.0086 29 1 2.6124 2.9485 4.1866 30 1 -0.3634 0.6257 -0.8153 31 1 -0.3634 -1.0188 -0.1342 32 1 -0.3634 0.3933 0.9494 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 3.4050 2.1597 -2.0972 36 1 3.8175 2.5508 -3.8335 37 1 4.5181 3.0300 -6.1174 38 1 9.0972 1.8562 -7.7643 39 1 9.5260 0.9311 -5.3656 40 1 7.6621 0.8571 -2.9674 41 1 3.9013 3.5813 0.3403 42 1 4.9849 2.4704 1.2436 43 1 2.7808 3.4457 2.4710 44 1 3.2075 1.7194 2.6780 45 1 -1.7472 2.9213 2.8871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087581793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:40 Heat of formation + Delta-G solvation = 21.576266 kcal Electronic energy + Delta-G solvation = -27569.623943 eV Core-core repulsion = 23747.299267 eV Total energy + Delta-G solvation = -3822.324676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.82415 -40.14032 -38.39649 -37.34799 -34.35608 -33.23007 -32.54918 -32.25996 -30.95025 -29.86651 -28.99906 -27.18123 -24.80692 -23.56849 -23.06718 -22.09085 -21.72053 -21.21218 -20.37596 -19.46975 -18.09374 -17.68799 -17.49252 -16.89999 -16.49087 -16.23341 -15.18777 -14.99162 -14.85611 -14.53807 -14.14265 -13.90934 -13.58114 -13.48392 -13.31179 -13.12301 -13.06888 -12.97615 -12.49046 -12.42808 -12.10608 -11.75572 -11.46061 -11.33841 -11.27034 -10.87371 -10.64706 -10.52594 -10.32367 -10.12489 -9.99940 -9.93298 -9.47257 -9.06552 -9.02689 -8.80961 -8.65880 -8.52766 -7.07280 -6.25631 -3.35889 0.52509 0.61163 1.97796 2.36916 2.70966 3.12300 3.43244 3.52586 3.59036 3.70206 4.05913 4.24139 4.53544 4.59125 4.63163 4.80272 4.89509 4.93418 5.01810 5.16383 5.21300 5.23821 5.36032 5.47432 5.60260 5.77144 5.79341 5.79553 5.88315 5.92018 5.94137 5.98241 6.07936 6.13888 6.16692 6.31407 6.40317 6.51799 6.59787 6.60706 6.71560 6.73957 6.74846 7.01041 7.30294 7.55140 7.82901 8.22851 8.33418 9.00647 9.51744 10.24428 11.15377 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026716 B = 0.002605 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.801587 B =10744.947302 C =11155.879299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.040 0.960 5 C 0.133 3.867 6 H 0.096 0.904 7 N -0.710 5.710 8 C 0.561 3.439 9 O -0.538 6.538 10 C -0.147 4.147 11 C -0.062 4.062 12 C -0.111 4.111 13 C 0.070 3.930 14 O -0.194 6.194 15 C 0.003 3.997 16 C -0.201 4.201 17 C -0.144 4.144 18 C -0.005 4.005 19 C -0.140 4.140 20 C 0.109 3.891 21 N -0.600 5.600 22 C -0.312 4.312 23 H 0.074 0.926 24 C -0.016 4.016 25 N -0.926 5.926 26 Si 1.066 2.934 27 H -0.300 1.300 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.092 0.908 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.398 0.602 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.210 0.790 39 H 0.161 0.839 40 H 0.143 0.857 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.027 0.973 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.711 -1.709 -20.799 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.050 3.950 4 H 0.058 0.942 5 C 0.029 3.971 6 H 0.114 0.886 7 N -0.360 5.360 8 C 0.348 3.652 9 O -0.417 6.417 10 C -0.151 4.151 11 C -0.080 4.080 12 C -0.129 4.129 13 C 0.022 3.978 14 O -0.095 6.095 15 C -0.061 4.061 16 C -0.220 4.220 17 C -0.145 4.145 18 C -0.024 4.024 19 C -0.180 4.180 20 C -0.016 4.016 21 N -0.327 5.327 22 C -0.440 4.440 23 H 0.092 0.908 24 C -0.217 4.217 25 N -0.566 5.566 26 Si 0.898 3.102 27 H -0.228 1.228 28 H -0.219 1.219 29 H -0.212 1.212 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.234 0.766 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.226 0.774 39 H 0.179 0.821 40 H 0.161 0.839 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.363 -1.980 -18.801 25.668 hybrid contribution -0.487 0.073 -1.999 2.058 sum 16.875 -1.907 -20.799 26.852 Atomic orbital electron populations 1.21906 0.95500 0.99074 1.04294 1.21881 0.97152 0.97304 0.99949 1.21189 0.89662 0.92593 0.91566 0.94199 1.22145 0.95653 0.99237 0.80083 0.88601 1.45938 1.14102 1.61913 1.14093 1.18040 0.82007 0.78474 0.86677 1.90775 1.53251 1.43070 1.54556 1.19843 0.95367 1.05304 0.94547 1.20826 0.99374 0.95961 0.91855 1.19572 0.92316 1.04378 0.96675 1.19867 0.94571 0.99504 0.83815 1.84005 1.24591 1.67803 1.33054 1.23982 0.84355 0.98433 0.99352 1.22568 0.98703 1.07114 0.93638 1.19910 0.94830 1.04598 0.95169 1.20671 0.94592 0.93923 0.93180 1.23142 0.99133 0.98180 0.97510 1.22196 0.86554 0.98679 0.94151 1.44744 1.01784 1.66078 1.20121 1.19983 0.83192 1.48327 0.92449 0.90803 1.26105 1.01581 0.97928 0.96081 1.70928 1.02288 1.46097 1.37333 0.83853 0.74218 0.76636 0.75465 1.22799 1.21871 1.21168 0.94312 0.95048 0.88901 0.93969 0.92373 0.76618 0.84206 0.84355 0.77380 0.82118 0.83928 0.91095 0.91159 0.91641 0.95581 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.05 37.16 0.34 -2.54 16 2 C -0.12 -2.26 5.46 -26.73 -0.15 -2.41 16 3 C 0.16 2.95 3.00 -66.95 -0.20 2.75 16 4 H 0.04 0.73 7.70 -51.93 -0.40 0.33 16 5 C 0.13 2.23 2.76 -66.09 -0.18 2.05 16 6 H 0.10 1.72 7.39 -51.93 -0.38 1.34 16 7 N -0.71 -9.68 5.16 -53.01 -0.27 -9.96 16 8 C 0.56 8.07 7.76 -12.40 -0.10 7.97 16 9 O -0.54 -9.55 16.06 5.30 0.09 -9.46 16 10 C -0.15 -1.74 5.87 -104.96 -0.62 -2.35 16 11 C -0.06 -0.58 9.46 -39.53 -0.37 -0.95 16 12 C -0.11 -0.99 9.99 -39.89 -0.40 -1.39 16 13 C 0.07 0.72 7.42 -38.32 -0.28 0.44 16 14 O -0.19 -1.79 10.57 4.10 0.04 -1.75 16 15 C 0.00 0.02 11.95 29.23 0.35 0.37 16 16 C -0.20 -1.57 11.14 -37.61 -0.42 -1.99 16 17 C -0.14 -1.51 6.39 -105.18 -0.67 -2.19 16 18 C 0.00 -0.05 9.64 -38.90 -0.38 -0.43 16 19 C -0.14 -2.45 6.77 -24.58 -0.17 -2.62 16 20 C 0.11 2.31 4.50 -2.53 -0.01 2.30 16 21 N -0.60 -13.71 2.89 -162.57 -0.47 -14.18 16 22 C -0.31 -8.26 7.70 -15.06 -0.12 -8.38 16 23 H 0.07 2.08 7.42 -52.49 -0.39 1.69 16 24 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 25 N -0.93 -28.10 13.70 55.49 0.76 -27.34 16 26 Si 1.07 26.24 24.68 -169.99 -4.19 22.04 16 27 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 28 H -0.29 -6.99 7.03 56.52 0.40 -6.60 16 29 H -0.28 -6.45 5.55 56.52 0.31 -6.13 16 30 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 2.13 5.49 -51.93 -0.28 1.84 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.40 4.41 6.34 -40.82 -0.26 4.15 16 36 H 0.14 0.99 6.37 -52.48 -0.33 0.66 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.21 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.14 1.62 7.65 -52.48 -0.40 1.22 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.46 6.48 -51.93 -0.34 1.12 16 44 H 0.03 0.58 5.48 -51.93 -0.28 0.29 16 45 H 0.26 7.85 8.73 -40.82 -0.36 7.49 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -32.91 359.18 -8.23 -41.14 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.12 Total: 4.00 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.47 Total: -9.91 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.02 Total: -51.47 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.13 Total: -11.21 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -4.19 Total: 22.04 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.91 -8.23 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087581793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.715 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds