Wall clock time and date at job start Tue Mar 31 2020 15:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46979 * 2 1 4 4 H 1.09004 * 109.99988 * 305.03066 * 3 2 1 5 5 C 1.54334 * 109.99095 * 183.99643 * 3 2 1 6 6 H 1.09003 * 110.51446 * 336.97533 * 5 3 2 7 7 N 1.46503 * 111.00462 * 100.12280 * 5 3 2 8 8 C 1.34774 * 119.99565 * 200.23363 * 7 5 3 9 9 O 1.21570 * 120.00546 * 0.02562 * 8 7 5 10 10 C 1.47699 * 119.99567 * 180.02562 * 8 7 5 11 11 C 1.40106 * 120.02698 * 359.72559 * 10 8 7 12 12 C 1.36435 * 120.68852 * 179.74094 * 11 10 8 13 13 C 1.39163 * 120.27224 * 0.55183 * 12 11 10 14 14 O 1.34747 * 133.25239 * 179.75460 * 13 12 11 15 15 C 1.34444 * 110.95072 * 179.97438 * 14 13 12 16 16 C 1.33951 * 110.20238 * 359.97438 * 15 14 13 17 17 C 1.40672 * 119.53848 * 359.70884 * 13 12 11 18 18 C 1.39080 * 120.20572 * 0.02562 * 17 13 12 19 19 C 1.55153 * 103.02023 * 218.66505 * 5 3 2 20 20 C 1.54912 * 101.58360 * 35.30104 * 19 5 3 21 21 N 1.47015 * 109.88624 * 66.12381 * 3 2 1 22 22 C 1.36933 * 125.64947 * 298.39962 * 21 3 2 23 23 H 1.08001 * 120.00046 * 332.38152 * 22 21 3 24 24 C 1.38816 * 120.00403 * 152.38038 * 22 21 3 25 25 N 1.31613 * 120.00274 * 170.70025 * 24 22 21 26 26 Si 1.86804 * 119.99842 * 350.71034 * 24 22 21 27 27 H 1.48495 * 109.47208 * 185.76343 * 26 24 22 28 28 H 1.48500 * 109.46689 * 305.76579 * 26 24 22 29 29 H 1.48506 * 109.47238 * 65.76003 * 26 24 22 30 30 H 1.09001 * 109.47258 * 52.49654 * 1 2 3 31 31 H 1.08997 * 109.47298 * 172.49588 * 1 2 3 32 32 H 1.09002 * 109.47248 * 292.50042 * 1 2 3 33 33 H 1.09002 * 109.47037 * 239.99793 * 2 1 3 34 34 H 1.08993 * 109.46731 * 119.99702 * 2 1 3 35 35 H 0.96995 * 119.99578 * 20.23605 * 7 5 3 36 36 H 1.08005 * 119.65343 * 0.02562 * 11 10 8 37 37 H 1.08001 * 119.86132 * 180.23474 * 12 11 10 38 38 H 1.07998 * 124.89432 * 180.02562 * 15 14 13 39 39 H 1.07999 * 126.92596 * 180.02562 * 16 15 14 40 40 H 1.08009 * 120.32395 * 180.02562 * 18 17 13 41 41 H 1.09002 * 111.00582 * 277.23180 * 19 5 3 42 42 H 1.08995 * 111.00809 * 153.37892 * 19 5 3 43 43 H 1.08999 * 110.37030 * 204.15360 * 20 19 5 44 44 H 1.09001 * 110.36222 * 81.83137 * 20 19 5 45 45 H 0.97006 * 120.00278 * 5.62658 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6099 1.9900 -0.8387 5 6 3.5799 1.4577 -0.1011 6 1 3.9951 0.5129 0.2498 7 7 4.0134 1.7345 -1.4729 8 6 5.2576 1.3983 -1.8671 9 8 6.0199 0.8649 -1.0846 10 6 5.6948 1.6778 -3.2499 11 6 4.8147 2.2872 -4.1539 12 6 5.2062 2.5564 -5.4328 13 6 6.4862 2.2172 -5.8608 14 8 7.1332 2.3522 -7.0350 15 6 8.3827 1.8624 -6.9545 16 6 8.6138 1.3841 -5.7248 17 6 7.3767 1.6001 -4.9635 18 6 6.9798 1.3305 -3.6580 19 6 3.9809 2.6192 0.8463 20 6 2.9165 2.4902 1.9644 21 7 1.6790 2.1005 1.2642 22 6 0.4047 2.3111 1.7189 23 1 -0.4094 2.4126 1.0165 24 6 0.1591 2.3941 3.0826 25 7 -1.0233 2.7763 3.5163 26 14 1.5069 1.9635 4.3022 27 1 0.9562 1.9971 5.6809 28 1 2.0238 0.6027 4.0086 29 1 2.6124 2.9485 4.1866 30 1 -0.3634 0.6257 -0.8153 31 1 -0.3634 -1.0188 -0.1342 32 1 -0.3634 0.3933 0.9494 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 3.4050 2.1597 -2.0972 36 1 3.8175 2.5508 -3.8335 37 1 4.5181 3.0300 -6.1174 38 1 9.0972 1.8562 -7.7643 39 1 9.5260 0.9311 -5.3656 40 1 7.6621 0.8571 -2.9674 41 1 3.9013 3.5813 0.3403 42 1 4.9849 2.4704 1.2436 43 1 2.7808 3.4457 2.4710 44 1 3.2075 1.7194 2.6780 45 1 -1.7472 2.9213 2.8871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087581793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:39 Heat of formation + Delta-G solvation = 0.177821 kcal Electronic energy + Delta-G solvation = -27570.551849 eV Core-core repulsion = 23747.299267 eV Total energy + Delta-G solvation = -3823.252582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.47001 -41.31188 -39.75791 -38.32598 -35.78894 -34.31521 -34.04603 -33.76668 -31.92923 -30.91964 -30.22858 -28.68880 -26.17922 -24.90488 -23.83798 -23.76107 -22.50966 -22.32250 -21.63120 -20.97772 -19.48458 -19.02137 -18.42927 -17.90134 -17.34210 -17.14991 -16.77254 -16.36057 -16.04419 -15.52111 -15.27645 -15.22586 -15.06504 -14.82559 -14.70646 -14.18633 -14.05289 -13.89249 -13.70247 -13.61761 -13.46858 -13.25061 -13.09971 -13.00270 -12.47826 -12.19603 -12.05853 -11.84404 -11.78067 -11.56755 -11.43753 -11.28576 -11.15388 -11.03353 -10.59985 -10.14717 -9.70891 -9.30305 -9.06557 -8.42233 -5.48738 -0.28919 -0.07188 1.40024 1.45200 1.53838 1.71771 1.74784 1.78198 1.99093 2.57224 2.72592 3.20833 3.29331 3.45229 3.58623 3.65662 3.68139 3.76716 3.98158 4.10236 4.16602 4.22521 4.23717 4.37517 4.38569 4.45859 4.56223 4.62437 4.64421 4.84749 4.86299 4.90762 4.97897 5.03674 5.07160 5.10436 5.14070 5.16091 5.18873 5.31338 5.39504 5.44566 5.55018 5.63743 5.80192 6.07568 6.23439 6.47856 6.89136 7.13450 7.49822 8.20210 8.97168 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026716 B = 0.002605 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.801587 B =10744.947302 C =11155.879299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.156 3.844 4 H 0.053 0.947 5 C 0.148 3.852 6 H 0.087 0.913 7 N -0.698 5.698 8 C 0.565 3.435 9 O -0.576 6.576 10 C -0.160 4.160 11 C -0.060 4.060 12 C -0.107 4.107 13 C 0.055 3.945 14 O -0.202 6.202 15 C 0.018 3.982 16 C -0.222 4.222 17 C -0.161 4.161 18 C -0.019 4.019 19 C -0.128 4.128 20 C 0.101 3.899 21 N -0.617 5.617 22 C -0.278 4.278 23 H 0.051 0.949 24 C -0.073 4.073 25 N -0.968 5.968 26 Si 1.096 2.904 27 H -0.315 1.315 28 H -0.284 1.284 29 H -0.254 1.254 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.413 0.587 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.254 0.746 39 H 0.180 0.820 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.024 0.976 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.947 -1.720 -23.953 30.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C 0.049 3.951 4 H 0.071 0.929 5 C 0.042 3.958 6 H 0.105 0.895 7 N -0.350 5.350 8 C 0.353 3.647 9 O -0.457 6.457 10 C -0.163 4.163 11 C -0.079 4.079 12 C -0.125 4.125 13 C 0.007 3.993 14 O -0.103 6.103 15 C -0.045 4.045 16 C -0.240 4.240 17 C -0.162 4.162 18 C -0.038 4.038 19 C -0.168 4.168 20 C -0.023 4.023 21 N -0.344 5.344 22 C -0.407 4.407 23 H 0.069 0.931 24 C -0.267 4.267 25 N -0.612 5.612 26 Si 0.924 3.076 27 H -0.244 1.244 28 H -0.211 1.211 29 H -0.180 1.180 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.251 0.749 36 H 0.181 0.819 37 H 0.183 0.817 38 H 0.270 0.730 39 H 0.197 0.803 40 H 0.151 0.849 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 19.627 -1.981 -22.021 29.565 hybrid contribution -1.114 0.047 -1.247 1.673 sum 18.512 -1.935 -23.268 29.796 Atomic orbital electron populations 1.21779 0.96206 1.00205 1.01995 1.21841 0.96366 0.97020 1.00720 1.21308 0.91308 0.92671 0.89770 0.92946 1.21780 0.93806 0.98607 0.81620 0.89516 1.45710 1.14344 1.61886 1.13062 1.18380 0.81489 0.77413 0.87369 1.90757 1.54277 1.44833 1.55845 1.19684 0.96095 1.07032 0.93504 1.21023 0.99908 0.95339 0.91607 1.19901 0.92315 1.03451 0.96828 1.20191 0.95185 0.99709 0.84188 1.84025 1.25667 1.67958 1.32634 1.24869 0.83620 0.95995 1.00063 1.22899 0.98755 1.08380 0.93992 1.20209 0.96333 1.04684 0.94935 1.20680 0.94692 0.94649 0.93776 1.23050 0.98294 0.99070 0.96339 1.22249 0.86876 0.97845 0.95362 1.44816 1.01121 1.67064 1.21424 1.19789 0.84273 1.44889 0.91720 0.93139 1.27047 1.02458 0.98966 0.98243 1.71019 1.03091 1.49962 1.37163 0.83486 0.73424 0.77548 0.73112 1.24379 1.21098 1.17961 0.93573 0.93005 0.93306 0.90777 0.93921 0.74851 0.81870 0.81742 0.72990 0.80304 0.84856 0.89936 0.90060 0.92848 0.95835 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 9.05 71.98 0.65 -4.73 16 2 C -0.12 -4.18 5.46 30.59 0.17 -4.01 16 3 C 0.16 5.55 3.00 45.35 0.14 5.69 16 4 H 0.05 1.78 7.70 -2.38 -0.02 1.76 16 5 C 0.15 4.61 2.76 46.18 0.13 4.73 16 6 H 0.09 2.95 7.39 -2.39 -0.02 2.93 16 7 N -0.70 -17.22 5.16 -439.90 -2.27 -19.49 16 8 C 0.56 15.30 7.76 86.74 0.67 15.97 16 9 O -0.58 -19.96 16.06 -3.94 -0.06 -20.03 16 10 C -0.16 -3.52 5.87 -20.09 -0.12 -3.64 16 11 C -0.06 -0.97 9.46 22.30 0.21 -0.76 16 12 C -0.11 -1.61 9.99 22.07 0.22 -1.39 16 13 C 0.06 1.01 7.42 23.09 0.17 1.18 16 14 O -0.20 -3.18 10.57 -8.26 -0.09 -3.26 16 15 C 0.02 0.18 11.95 66.84 0.80 0.98 16 16 C -0.22 -2.98 11.14 23.55 0.26 -2.72 16 17 C -0.16 -3.15 6.39 -20.23 -0.13 -3.28 16 18 C -0.02 -0.42 9.64 22.71 0.22 -0.20 16 19 C -0.13 -4.19 6.77 31.99 0.22 -3.98 16 20 C 0.10 4.16 4.50 86.86 0.39 4.55 16 21 N -0.62 -27.72 2.89 -668.24 -1.93 -29.64 16 22 C -0.28 -14.93 7.70 84.04 0.65 -14.29 16 23 H 0.05 2.93 7.42 -2.91 -0.02 2.91 16 24 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 25 N -0.97 -60.99 13.70 21.65 0.30 -60.69 16 26 Si 1.10 53.63 24.68 68.60 1.69 55.32 16 27 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 28 H -0.28 -13.38 7.03 99.48 0.70 -12.68 16 29 H -0.25 -11.09 5.55 99.48 0.55 -10.54 16 30 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 2.26 5.49 -2.39 -0.01 2.25 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 7.74 6.34 -92.71 -0.59 7.16 16 36 H 0.16 1.71 6.37 -2.91 -0.02 1.69 16 37 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.25 -0.13 8.06 -2.91 -0.02 -0.15 16 39 H 0.18 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.13 3.10 7.65 -2.91 -0.02 3.07 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.05 2.31 6.48 -2.39 -0.02 2.29 16 44 H 0.02 1.01 5.48 -2.39 -0.01 0.99 16 45 H 0.25 15.65 8.73 -92.70 -0.81 14.84 16 Total: -1.00 -74.26 359.18 2.99 -71.27 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.23 Total: 16.20 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 5.11 Total: -9.67 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -3.90 Total: -109.83 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.15 Total: -23.29 kcal Atomic # 14 Polarization: 53.63 SS G_CDS: 1.69 Total: 55.32 kcal Total: -74.26 2.99 -71.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087581793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.448 kcal (2) G-P(sol) polarization free energy of solvation -74.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds