Wall clock time and date at job start Tue Mar 31 2020 15:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46779 * 2 1 4 4 H 1.08995 * 109.99852 * 304.73122 * 3 2 1 5 5 C 1.54323 * 109.88126 * 183.63577 * 3 2 1 6 6 H 1.08998 * 110.72258 * 336.93255 * 5 3 2 7 7 N 1.46499 * 110.71791 * 100.02766 * 5 3 2 8 8 C 1.34786 * 119.99616 * 204.99904 * 7 5 3 9 9 O 1.21650 * 119.99978 * 0.02562 * 8 7 5 10 10 C 1.46982 * 119.99445 * 180.02562 * 8 7 5 11 11 C 1.35814 * 125.12738 * 180.02562 * 10 8 7 12 12 C 1.46248 * 106.07701 * 179.97438 * 11 10 8 13 13 C 1.39699 * 134.18977 * 179.97438 * 12 11 10 14 14 C 1.36627 * 119.70838 * 180.02562 * 13 12 11 15 15 C 1.38837 * 120.44461 * 359.97438 * 14 13 12 16 16 C 1.37789 * 120.74325 * 0.02562 * 15 14 13 17 17 C 1.39034 * 119.85746 * 0.02562 * 16 15 14 18 18 O 1.34708 * 133.24166 * 180.34532 * 17 16 15 19 19 C 1.55154 * 102.94296 * 218.38999 * 5 3 2 20 20 C 1.54691 * 101.67708 * 35.33496 * 19 5 3 21 21 N 1.47023 * 109.88009 * 65.82840 * 3 2 1 22 22 C 1.36935 * 125.65106 * 298.31884 * 21 3 2 23 23 H 1.07999 * 120.00014 * 329.68254 * 22 21 3 24 24 C 1.38813 * 120.00036 * 149.68342 * 22 21 3 25 25 N 1.31612 * 119.99794 * 172.00840 * 24 22 21 26 26 Si 1.86800 * 119.99996 * 352.00830 * 24 22 21 27 27 H 1.48499 * 109.47163 * 180.02562 * 26 24 22 28 28 H 1.48502 * 109.47030 * 300.00040 * 26 24 22 29 29 H 1.48500 * 109.46906 * 60.00068 * 26 24 22 30 30 H 1.08993 * 109.47393 * 292.89565 * 1 2 3 31 31 H 1.09001 * 109.47326 * 52.90107 * 1 2 3 32 32 H 1.09005 * 109.47227 * 172.89206 * 1 2 3 33 33 H 1.08995 * 109.47210 * 240.00176 * 2 1 3 34 34 H 1.08993 * 109.47347 * 119.99906 * 2 1 3 35 35 H 0.96996 * 120.00225 * 25.00220 * 7 5 3 36 36 H 1.08003 * 126.95980 * 359.97438 * 11 10 8 37 37 H 1.07996 * 120.15072 * 0.02562 * 13 12 11 38 38 H 1.08002 * 119.77371 * 180.02562 * 14 13 12 39 39 H 1.08005 * 119.62682 * 180.02562 * 15 14 13 40 40 H 1.08008 * 120.07237 * 179.97438 * 16 15 14 41 41 H 1.09003 * 111.00387 * 153.57333 * 19 5 3 42 42 H 1.08996 * 111.00624 * 277.39237 * 19 5 3 43 43 H 1.08999 * 110.39554 * 204.36027 * 20 19 5 44 44 H 1.09004 * 110.23559 * 82.11169 * 20 19 5 45 45 H 0.97004 * 120.00417 * 355.27640 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6140 1.9885 -0.8417 5 6 3.5804 1.4547 -0.0920 6 1 3.9954 0.5115 0.2634 7 7 4.0154 1.7258 -1.4644 8 6 5.2238 1.3015 -1.8844 9 8 5.9529 0.6930 -1.1241 10 6 5.6606 1.5740 -3.2612 11 6 6.8519 1.1958 -3.7924 12 6 6.8502 1.6764 -5.1737 13 6 7.7640 1.6116 -6.2284 14 6 7.4506 2.1780 -7.4316 15 6 6.2309 2.8161 -7.6123 16 6 5.3160 2.8909 -6.5848 17 6 5.6128 2.3229 -5.3510 18 8 4.9359 2.2323 -4.1899 19 6 3.9756 2.6224 0.8500 20 6 2.9066 2.5034 1.9617 21 7 1.6728 2.1026 1.2614 22 6 0.3962 2.3152 1.7088 23 1 -0.4069 2.4603 1.0013 24 6 0.1342 2.3444 3.0717 25 7 -1.0555 2.7031 3.5055 26 14 1.4701 1.8745 4.2898 27 1 0.9407 1.9867 5.6727 28 1 1.9007 0.4760 4.0371 29 1 2.6306 2.7868 4.1280 30 1 -0.3634 0.3998 0.9466 31 1 -0.3634 0.6199 -0.8197 32 1 -0.3634 -1.0198 -0.1272 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8899 35 1 3.4340 2.2106 -2.0707 36 1 7.6407 0.6506 -3.2955 37 1 8.7140 1.1160 -6.0933 38 1 8.1561 2.1281 -8.2478 39 1 5.9966 3.2590 -8.5692 40 1 4.3705 3.3903 -6.7372 41 1 4.9782 2.4775 1.2525 42 1 3.8973 3.5813 0.3377 43 1 2.7662 3.4636 2.4581 44 1 3.1974 1.7409 2.6843 45 1 -1.7275 3.0127 2.8782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087818828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:33 Heat of formation + Delta-G solvation = 20.683421 kcal Electronic energy + Delta-G solvation = -27576.218972 eV Core-core repulsion = 23753.855579 eV Total energy + Delta-G solvation = -3822.363393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.79414 -39.88926 -38.29490 -37.96072 -34.42242 -33.11311 -32.54970 -32.29976 -30.81541 -30.15316 -29.07425 -27.23366 -24.92803 -23.63642 -23.00553 -22.09240 -21.96585 -21.07173 -20.51280 -19.57345 -18.20811 -17.78005 -17.51760 -16.65977 -16.53671 -16.21587 -15.33244 -14.98480 -14.74883 -14.58783 -14.40659 -13.94293 -13.56661 -13.48065 -13.31859 -13.21267 -13.12539 -12.66430 -12.46934 -12.35771 -12.18106 -11.75723 -11.51524 -11.37135 -11.30551 -10.91183 -10.55803 -10.55202 -10.47131 -10.28496 -10.13157 -10.03171 -9.43895 -9.08399 -9.06118 -8.97356 -8.60109 -8.51441 -6.99538 -6.33107 -3.39942 0.25247 0.96105 1.55343 2.17238 2.99827 3.01362 3.31320 3.43217 3.52155 3.70186 4.12823 4.25789 4.52664 4.59856 4.68640 4.78868 4.85464 4.93876 5.04516 5.11876 5.18246 5.22716 5.33775 5.44580 5.54518 5.73462 5.76588 5.84762 5.85586 5.91370 5.97773 6.02350 6.05816 6.11057 6.16093 6.24033 6.35040 6.52243 6.58374 6.60343 6.64472 6.72567 6.73474 6.99883 7.34238 7.40178 7.84088 7.97460 8.33141 8.98301 9.48715 10.22854 11.12641 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024890 B = 0.002647 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.672586 B =10575.681693 C =10981.572696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.042 0.958 5 C 0.130 3.870 6 H 0.102 0.898 7 N -0.699 5.699 8 C 0.597 3.403 9 O -0.516 6.516 10 C -0.018 4.018 11 C -0.118 4.118 12 C -0.144 4.144 13 C -0.061 4.061 14 C -0.140 4.140 15 C -0.085 4.085 16 C -0.110 4.110 17 C 0.069 3.931 18 O -0.183 6.183 19 C -0.142 4.142 20 C 0.114 3.886 21 N -0.600 5.600 22 C -0.313 4.313 23 H 0.072 0.928 24 C -0.010 4.010 25 N -0.924 5.924 26 Si 1.057 2.943 27 H -0.300 1.300 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.094 0.906 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.406 0.594 36 H 0.171 0.829 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.027 0.973 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.306 -0.958 -21.280 26.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.049 3.951 4 H 0.059 0.941 5 C 0.026 3.974 6 H 0.120 0.880 7 N -0.349 5.349 8 C 0.382 3.618 9 O -0.393 6.393 10 C -0.068 4.068 11 C -0.138 4.138 12 C -0.144 4.144 13 C -0.079 4.079 14 C -0.158 4.158 15 C -0.104 4.104 16 C -0.128 4.128 17 C 0.021 3.979 18 O -0.085 6.085 19 C -0.182 4.182 20 C -0.011 4.011 21 N -0.327 5.327 22 C -0.440 4.440 23 H 0.090 0.910 24 C -0.211 4.211 25 N -0.564 5.564 26 Si 0.888 3.112 27 H -0.228 1.228 28 H -0.218 1.218 29 H -0.206 1.206 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.242 0.758 36 H 0.188 0.812 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.714 -1.486 -19.007 25.354 hybrid contribution -0.495 0.373 -2.055 2.146 sum 16.218 -1.113 -21.061 26.605 Atomic orbital electron populations 1.21907 0.95399 0.99086 1.04403 1.21868 0.97285 0.97136 0.99915 1.21213 0.89404 0.92787 0.91675 0.94079 1.22283 0.96011 0.99606 0.79524 0.88001 1.45989 1.17185 1.56741 1.14937 1.16655 0.82354 0.79675 0.83134 1.90887 1.54067 1.41305 1.53082 1.22126 0.92928 1.01282 0.90447 1.22738 0.97523 1.01392 0.92192 1.19949 0.96125 1.03481 0.94893 1.20383 0.98315 0.97928 0.91254 1.20814 0.97552 0.99932 0.97508 1.21016 0.93093 0.98049 0.98196 1.20036 1.01653 1.02502 0.88627 1.19778 0.91132 0.99988 0.87038 1.84037 1.42296 1.63522 1.18612 1.23148 0.99329 0.98058 0.97657 1.22195 0.86471 0.98574 0.93877 1.44722 1.01814 1.65644 1.20538 1.19951 0.83380 1.48143 0.92564 0.91008 1.26212 1.00588 0.98167 0.96161 1.70904 1.04242 1.43919 1.37327 0.84042 0.74623 0.76895 0.75655 1.22756 1.21818 1.20596 0.88697 0.94369 0.95067 0.94028 0.92314 0.75841 0.81183 0.85142 0.85104 0.84538 0.84640 0.91070 0.91026 0.91792 0.95578 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.10 37.16 0.34 -2.61 16 2 C -0.12 -2.28 5.46 -26.73 -0.15 -2.43 16 3 C 0.16 2.98 3.00 -66.95 -0.20 2.78 16 4 H 0.04 0.78 7.72 -51.93 -0.40 0.38 16 5 C 0.13 2.18 2.85 -66.10 -0.19 1.99 16 6 H 0.10 1.80 7.25 -51.93 -0.38 1.42 16 7 N -0.70 -10.03 5.17 -53.24 -0.28 -10.31 16 8 C 0.60 8.80 7.79 -12.71 -0.10 8.70 16 9 O -0.52 -8.90 16.47 5.23 0.09 -8.81 16 10 C -0.02 -0.23 7.07 -36.91 -0.26 -0.49 16 11 C -0.12 -1.36 10.81 -37.23 -0.40 -1.76 16 12 C -0.14 -1.53 6.38 -105.19 -0.67 -2.20 16 13 C -0.06 -0.49 10.06 -39.62 -0.40 -0.89 16 14 C -0.14 -0.92 9.98 -39.94 -0.40 -1.32 16 15 C -0.09 -0.56 10.01 -39.52 -0.40 -0.96 16 16 C -0.11 -0.93 10.07 -39.45 -0.40 -1.33 16 17 C 0.07 0.77 7.41 -38.35 -0.28 0.49 16 18 O -0.18 -2.28 10.28 2.80 0.03 -2.25 16 19 C -0.14 -2.45 6.76 -24.70 -0.17 -2.62 16 20 C 0.11 2.38 4.44 -2.65 -0.01 2.37 16 21 N -0.60 -13.71 2.85 -162.71 -0.46 -14.17 16 22 C -0.31 -8.30 7.56 -15.06 -0.11 -8.41 16 23 H 0.07 2.04 7.58 -52.49 -0.40 1.64 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 25 N -0.92 -27.98 13.70 55.49 0.76 -27.21 16 26 Si 1.06 25.85 25.03 -169.99 -4.26 21.60 16 27 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.21 5.19 56.52 0.29 -5.91 16 30 H 0.09 2.21 5.49 -51.93 -0.29 1.93 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 5.19 8.08 -40.82 -0.33 4.86 16 36 H 0.17 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 39 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 40 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.40 6.77 -51.93 -0.35 1.05 16 44 H 0.03 0.57 5.37 -51.93 -0.28 0.29 16 45 H 0.26 7.87 8.73 -40.82 -0.36 7.52 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -31.32 363.28 -8.87 -40.19 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.33 Total: 4.56 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -3.89 Total: -9.07 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.02 Total: -51.69 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.12 Total: -11.07 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -4.26 Total: 21.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.32 -8.87 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087818828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.876 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds