Wall clock time and date at job start Tue Mar 31 2020 15:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46779 * 2 1 4 4 H 1.08995 * 109.99852 * 304.73122 * 3 2 1 5 5 C 1.54323 * 109.88126 * 183.63577 * 3 2 1 6 6 H 1.08998 * 110.72258 * 336.93255 * 5 3 2 7 7 N 1.46499 * 110.71791 * 100.02766 * 5 3 2 8 8 C 1.34786 * 119.99616 * 204.99904 * 7 5 3 9 9 O 1.21650 * 119.99978 * 0.02562 * 8 7 5 10 10 C 1.46982 * 119.99445 * 180.02562 * 8 7 5 11 11 C 1.35814 * 125.12738 * 180.02562 * 10 8 7 12 12 C 1.46248 * 106.07701 * 179.97438 * 11 10 8 13 13 C 1.39699 * 134.18977 * 179.97438 * 12 11 10 14 14 C 1.36627 * 119.70838 * 180.02562 * 13 12 11 15 15 C 1.38837 * 120.44461 * 359.97438 * 14 13 12 16 16 C 1.37789 * 120.74325 * 0.02562 * 15 14 13 17 17 C 1.39034 * 119.85746 * 0.02562 * 16 15 14 18 18 O 1.34708 * 133.24166 * 180.34532 * 17 16 15 19 19 C 1.55154 * 102.94296 * 218.38999 * 5 3 2 20 20 C 1.54691 * 101.67708 * 35.33496 * 19 5 3 21 21 N 1.47023 * 109.88009 * 65.82840 * 3 2 1 22 22 C 1.36935 * 125.65106 * 298.31884 * 21 3 2 23 23 H 1.07999 * 120.00014 * 329.68254 * 22 21 3 24 24 C 1.38813 * 120.00036 * 149.68342 * 22 21 3 25 25 N 1.31612 * 119.99794 * 172.00840 * 24 22 21 26 26 Si 1.86800 * 119.99996 * 352.00830 * 24 22 21 27 27 H 1.48499 * 109.47163 * 180.02562 * 26 24 22 28 28 H 1.48502 * 109.47030 * 300.00040 * 26 24 22 29 29 H 1.48500 * 109.46906 * 60.00068 * 26 24 22 30 30 H 1.08993 * 109.47393 * 292.89565 * 1 2 3 31 31 H 1.09001 * 109.47326 * 52.90107 * 1 2 3 32 32 H 1.09005 * 109.47227 * 172.89206 * 1 2 3 33 33 H 1.08995 * 109.47210 * 240.00176 * 2 1 3 34 34 H 1.08993 * 109.47347 * 119.99906 * 2 1 3 35 35 H 0.96996 * 120.00225 * 25.00220 * 7 5 3 36 36 H 1.08003 * 126.95980 * 359.97438 * 11 10 8 37 37 H 1.07996 * 120.15072 * 0.02562 * 13 12 11 38 38 H 1.08002 * 119.77371 * 180.02562 * 14 13 12 39 39 H 1.08005 * 119.62682 * 180.02562 * 15 14 13 40 40 H 1.08008 * 120.07237 * 179.97438 * 16 15 14 41 41 H 1.09003 * 111.00387 * 153.57333 * 19 5 3 42 42 H 1.08996 * 111.00624 * 277.39237 * 19 5 3 43 43 H 1.08999 * 110.39554 * 204.36027 * 20 19 5 44 44 H 1.09004 * 110.23559 * 82.11169 * 20 19 5 45 45 H 0.97004 * 120.00417 * 355.27640 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6140 1.9885 -0.8417 5 6 3.5804 1.4547 -0.0920 6 1 3.9954 0.5115 0.2634 7 7 4.0154 1.7258 -1.4644 8 6 5.2238 1.3015 -1.8844 9 8 5.9529 0.6930 -1.1241 10 6 5.6606 1.5740 -3.2612 11 6 6.8519 1.1958 -3.7924 12 6 6.8502 1.6764 -5.1737 13 6 7.7640 1.6116 -6.2284 14 6 7.4506 2.1780 -7.4316 15 6 6.2309 2.8161 -7.6123 16 6 5.3160 2.8909 -6.5848 17 6 5.6128 2.3229 -5.3510 18 8 4.9359 2.2323 -4.1899 19 6 3.9756 2.6224 0.8500 20 6 2.9066 2.5034 1.9617 21 7 1.6728 2.1026 1.2614 22 6 0.3962 2.3152 1.7088 23 1 -0.4069 2.4603 1.0013 24 6 0.1342 2.3444 3.0717 25 7 -1.0555 2.7031 3.5055 26 14 1.4701 1.8745 4.2898 27 1 0.9407 1.9867 5.6727 28 1 1.9007 0.4760 4.0371 29 1 2.6306 2.7868 4.1280 30 1 -0.3634 0.3998 0.9466 31 1 -0.3634 0.6199 -0.8197 32 1 -0.3634 -1.0198 -0.1272 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8899 35 1 3.4340 2.2106 -2.0707 36 1 7.6407 0.6506 -3.2955 37 1 8.7140 1.1160 -6.0933 38 1 8.1561 2.1281 -8.2478 39 1 5.9966 3.2590 -8.5692 40 1 4.3705 3.3903 -6.7372 41 1 4.9782 2.4775 1.2525 42 1 3.8973 3.5813 0.3377 43 1 2.7662 3.4636 2.4581 44 1 3.1974 1.7409 2.6843 45 1 -1.7275 3.0127 2.8782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087818828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:31 Heat of formation + Delta-G solvation = 0.974546 kcal Electronic energy + Delta-G solvation = -27577.073613 eV Core-core repulsion = 23753.855579 eV Total energy + Delta-G solvation = -3823.218034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.58427 -41.15034 -39.58184 -38.79607 -35.87649 -34.29931 -34.02843 -33.88419 -31.57093 -31.26285 -30.38044 -28.74916 -26.29650 -24.95467 -23.85449 -23.72643 -22.80316 -22.22967 -21.76872 -21.05508 -19.53623 -19.30922 -18.48630 -17.78863 -17.52331 -17.07619 -16.76918 -16.32525 -15.90452 -15.76005 -15.32228 -15.23656 -15.07165 -14.91028 -14.71269 -14.19714 -14.15606 -14.07766 -13.72916 -13.47326 -13.28741 -13.21312 -13.04166 -12.86966 -12.52619 -12.23650 -11.95563 -11.94513 -11.81133 -11.64414 -11.62165 -11.32117 -11.26394 -11.15386 -10.59091 -10.23384 -9.69527 -9.32065 -8.97561 -8.51920 -5.53507 -0.52347 0.33031 0.75666 1.31496 1.46864 1.54194 1.73292 1.92542 1.94871 2.58921 2.70764 3.17569 3.20752 3.38927 3.57602 3.60446 3.71474 3.88828 3.97038 4.06658 4.15544 4.21495 4.30639 4.34421 4.39867 4.46614 4.52820 4.55663 4.61433 4.80315 4.82306 4.88138 4.93847 5.00462 5.07267 5.07737 5.13802 5.23234 5.24338 5.35462 5.43895 5.47136 5.55851 5.62941 5.78846 5.97829 6.22922 6.29422 6.83581 6.86968 7.45866 8.18177 8.93567 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024890 B = 0.002647 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.672586 B =10575.681693 C =10981.572696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.155 3.845 4 H 0.045 0.955 5 C 0.145 3.855 6 H 0.099 0.901 7 N -0.693 5.693 8 C 0.604 3.396 9 O -0.545 6.545 10 C -0.045 4.045 11 C -0.107 4.107 12 C -0.166 4.166 13 C -0.066 4.066 14 C -0.136 4.136 15 C -0.073 4.073 16 C -0.126 4.126 17 C 0.045 3.955 18 O -0.195 6.195 19 C -0.130 4.130 20 C 0.105 3.895 21 N -0.617 5.617 22 C -0.281 4.281 23 H 0.044 0.956 24 C -0.066 4.066 25 N -0.966 5.966 26 Si 1.088 2.912 27 H -0.315 1.315 28 H -0.284 1.284 29 H -0.243 1.243 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.414 0.586 36 H 0.181 0.819 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.171 0.829 40 H 0.148 0.852 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.028 0.972 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.508 -1.188 -24.547 31.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.048 3.952 4 H 0.063 0.937 5 C 0.039 3.961 6 H 0.117 0.883 7 N -0.343 5.343 8 C 0.390 3.610 9 O -0.424 6.424 10 C -0.095 4.095 11 C -0.127 4.127 12 C -0.167 4.167 13 C -0.084 4.084 14 C -0.153 4.153 15 C -0.090 4.090 16 C -0.145 4.145 17 C -0.003 4.003 18 O -0.098 6.098 19 C -0.169 4.169 20 C -0.019 4.019 21 N -0.344 5.344 22 C -0.410 4.410 23 H 0.062 0.938 24 C -0.260 4.260 25 N -0.609 5.609 26 Si 0.915 3.085 27 H -0.244 1.244 28 H -0.211 1.211 29 H -0.168 1.168 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.251 0.749 36 H 0.198 0.802 37 H 0.169 0.831 38 H 0.182 0.818 39 H 0.188 0.812 40 H 0.166 0.834 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 19.951 -1.707 -22.334 29.996 hybrid contribution -1.432 0.453 -1.360 2.026 sum 18.519 -1.254 -23.694 30.099 Atomic orbital electron populations 1.21776 0.96280 1.00132 1.02007 1.21826 0.96358 0.96892 1.00763 1.21301 0.91338 0.92768 0.89785 0.93723 1.21947 0.93920 0.99392 0.80797 0.88306 1.45799 1.17477 1.56944 1.14047 1.16751 0.81782 0.78780 0.83654 1.90863 1.54779 1.42594 1.54183 1.21731 0.93863 1.03769 0.90112 1.23012 0.96972 0.99940 0.92803 1.20170 0.96931 1.04485 0.95122 1.20754 0.98682 0.97914 0.91055 1.21281 0.97989 0.98327 0.97732 1.21519 0.92341 0.96386 0.98788 1.20410 1.02977 1.02909 0.88182 1.20294 0.91617 1.00998 0.87352 1.83977 1.42695 1.63947 1.19135 1.23061 0.98841 0.98661 0.96365 1.22267 0.86627 0.97903 0.95125 1.44781 1.01244 1.66636 1.21762 1.19712 0.84449 1.45064 0.91795 0.93846 1.27205 1.01474 0.99005 0.98337 1.70998 1.05318 1.47469 1.37129 0.83690 0.74008 0.77773 0.73075 1.24388 1.21057 1.16790 0.93001 0.94044 0.92967 0.91116 0.93371 0.74883 0.80214 0.83077 0.81809 0.81175 0.83412 0.89246 0.90173 0.92856 0.95446 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.63 9.10 71.98 0.65 -4.98 16 2 C -0.12 -4.30 5.46 30.60 0.17 -4.13 16 3 C 0.15 5.74 3.00 45.34 0.14 5.87 16 4 H 0.05 1.65 7.72 -2.39 -0.02 1.63 16 5 C 0.14 4.60 2.85 46.18 0.13 4.73 16 6 H 0.10 3.29 7.25 -2.39 -0.02 3.27 16 7 N -0.69 -18.88 5.17 -440.59 -2.28 -21.15 16 8 C 0.60 17.15 7.79 86.53 0.67 17.82 16 9 O -0.54 -18.18 16.47 -4.19 -0.07 -18.25 16 10 C -0.05 -1.14 7.07 24.00 0.17 -0.97 16 11 C -0.11 -2.35 10.81 23.79 0.26 -2.09 16 12 C -0.17 -3.26 6.38 -20.24 -0.13 -3.39 16 13 C -0.07 -0.86 10.06 22.25 0.22 -0.64 16 14 C -0.14 -1.21 9.98 22.04 0.22 -0.99 16 15 C -0.07 -0.67 10.01 22.31 0.22 -0.45 16 16 C -0.13 -1.86 10.07 22.35 0.23 -1.64 16 17 C 0.05 0.95 7.41 23.07 0.17 1.12 16 18 O -0.20 -4.75 10.28 -12.88 -0.13 -4.88 16 19 C -0.13 -4.20 6.76 31.91 0.22 -3.99 16 20 C 0.11 4.27 4.44 86.78 0.39 4.65 16 21 N -0.62 -28.05 2.85 -668.69 -1.90 -29.95 16 22 C -0.28 -15.33 7.56 84.03 0.64 -14.69 16 23 H 0.04 2.59 7.58 -2.91 -0.02 2.57 16 24 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 25 N -0.97 -61.04 13.70 21.65 0.30 -60.74 16 26 Si 1.09 52.75 25.03 68.60 1.72 54.46 16 27 H -0.32 -16.01 7.11 99.48 0.71 -15.30 16 28 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.24 -10.30 5.19 99.48 0.52 -9.79 16 30 H 0.05 2.48 5.49 -2.39 -0.01 2.47 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.41 10.05 8.08 -92.71 -0.75 9.31 16 36 H 0.18 3.39 8.06 -2.91 -0.02 3.37 16 37 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 39 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 40 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 41 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.05 2.26 6.77 -2.39 -0.02 2.25 16 44 H 0.03 1.14 5.37 -2.39 -0.01 1.12 16 45 H 0.25 15.78 8.73 -92.71 -0.81 14.97 16 Total: -1.00 -70.92 363.28 2.50 -68.42 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.04 Total: 19.22 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 4.83 Total: -7.13 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -3.89 Total: -111.85 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.20 Total: -23.13 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 1.72 Total: 54.46 kcal Total: -70.92 2.50 -68.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087818828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.394 kcal (2) G-P(sol) polarization free energy of solvation -70.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds