Wall clock time and date at job start Tue Mar 31 2020 14:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46836 * 2 1 4 4 C 1.52998 * 109.46836 * 180.02562 * 3 2 1 5 5 O 1.42907 * 109.46882 * 180.02562 * 4 3 2 6 6 C 1.35591 * 116.99798 * 179.97438 * 5 4 3 7 7 C 1.39905 * 118.80158 * 179.97438 * 6 5 4 8 8 C 1.38906 * 119.43532 * 179.97438 * 7 6 5 9 9 C 1.47715 * 121.36422 * 180.02562 * 8 7 6 10 10 O 1.21607 * 120.00038 * 133.66140 * 9 8 7 11 11 N 1.34783 * 119.99879 * 313.65550 * 9 8 7 12 12 C 1.46496 * 120.00146 * 4.74643 * 11 9 8 13 13 C 1.36669 * 119.99928 * 184.74045 * 11 9 8 14 14 H 1.08006 * 119.99889 * 13.94199 * 13 11 9 15 15 C 1.39177 * 120.00199 * 193.94463 * 13 11 9 16 16 N 1.31283 * 119.99859 * 28.55110 * 15 13 11 17 17 Si 1.86801 * 120.00301 * 208.55365 * 15 13 11 18 18 H 1.48495 * 109.47228 * 94.99417 * 17 15 13 19 19 H 1.48498 * 109.47093 * 214.99446 * 17 15 13 20 20 H 1.48500 * 109.46791 * 334.99143 * 17 15 13 21 21 C 1.46387 * 117.27206 * 0.02562 * 8 7 6 22 22 C 1.39896 * 121.55363 * 180.02562 * 21 8 7 23 23 C 1.36361 * 119.58445 * 180.02562 * 22 21 8 24 24 C 1.39270 * 120.79976 * 359.95679 * 23 22 21 25 25 C 1.36144 * 121.07017 * 0.02562 * 24 23 22 26 26 C 1.40613 * 119.72470 * 359.97438 * 25 24 23 27 27 N 1.31272 * 118.80444 * 359.73083 * 6 5 4 28 28 H 1.09003 * 109.46989 * 60.00231 * 1 2 3 29 29 H 1.09000 * 109.46539 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47303 * 300.00316 * 1 2 3 31 31 H 1.09000 * 109.47714 * 240.00029 * 2 1 3 32 32 H 1.09001 * 109.47445 * 119.99508 * 2 1 3 33 33 H 1.08999 * 109.47432 * 59.99763 * 3 2 1 34 34 H 1.09003 * 109.47143 * 299.99675 * 3 2 1 35 35 H 1.09001 * 109.47445 * 299.99508 * 4 3 2 36 36 H 1.09000 * 109.47714 * 60.00029 * 4 3 2 37 37 H 1.08000 * 120.27971 * 359.95904 * 7 6 5 38 38 H 1.09003 * 109.47443 * 87.97281 * 12 11 9 39 39 H 1.08994 * 109.47137 * 207.98054 * 12 11 9 40 40 H 1.09008 * 109.46899 * 327.97660 * 12 11 9 41 41 H 0.97000 * 119.99745 * 180.02562 * 16 15 13 42 42 H 1.07997 * 120.20541 * 359.95234 * 22 21 8 43 43 H 1.07999 * 119.60033 * 179.97438 * 23 22 21 44 44 H 1.07993 * 119.46573 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.13642 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3904 2.9676 0.0000 7 6 5.8980 4.2713 0.0001 8 6 7.2730 4.4686 0.0007 9 6 7.8549 5.8263 0.0013 10 8 8.7625 6.0985 0.7636 11 7 7.3802 6.7633 -0.8431 12 6 6.2200 6.4682 -1.6876 13 6 7.9810 7.9890 -0.9115 14 1 8.9552 8.1382 -0.4698 15 6 7.3375 9.0448 -1.5504 16 7 6.0259 9.0872 -1.5892 17 14 8.3399 10.4016 -2.3527 18 1 8.5149 10.1003 -3.7962 19 1 7.6307 11.6974 -2.1999 20 1 9.6709 10.4858 -1.6996 21 6 8.1217 3.2758 0.0007 22 6 9.5175 3.3705 0.0018 23 6 10.2694 2.2330 0.0013 24 6 9.6647 0.9784 0.0005 25 6 8.3092 0.8518 -0.0003 26 6 7.5014 2.0028 0.0003 27 7 6.1682 1.9101 0.0050 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6766 1.9565 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.9337 0.9287 0.8891 36 1 3.9330 0.9289 -0.8908 37 1 5.2265 5.1172 -0.0006 38 1 5.3054 6.7092 -1.1457 39 1 6.2715 7.0659 -2.5975 40 1 6.2199 5.4096 -1.9477 41 1 5.5774 9.8229 -2.0347 42 1 9.9964 4.3385 0.0020 43 1 11.3470 2.3058 0.0017 44 1 10.2810 0.0916 0.0005 45 1 7.8562 -0.1285 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154239244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:51 Heat of formation + Delta-G solvation = -16.317823 kcal Electronic energy + Delta-G solvation = -27485.664898 eV Core-core repulsion = 23661.697011 eV Total energy + Delta-G solvation = -3823.967887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.69027 -38.93785 -38.31828 -36.19822 -35.00737 -34.90642 -32.96476 -31.79604 -30.33534 -29.69063 -28.91515 -26.53171 -25.59823 -24.27192 -23.18548 -22.90354 -22.16388 -21.25787 -19.62572 -18.22168 -17.69252 -17.11629 -16.59461 -16.48285 -15.92004 -15.11019 -15.00429 -14.90568 -14.58021 -14.27784 -14.25753 -13.81296 -13.68889 -13.49082 -13.44721 -13.04746 -12.64062 -12.58814 -12.33378 -11.85948 -11.66441 -11.62050 -11.47657 -11.43762 -11.28012 -11.24276 -11.04785 -10.97071 -10.88303 -10.52423 -10.47186 -10.34629 -9.87111 -9.54840 -9.17187 -8.55698 -8.22822 -7.99500 -7.81068 -6.67083 -3.96453 0.58838 1.15426 2.11643 3.00256 3.06564 3.15505 3.16917 3.20517 3.76506 3.93817 4.38447 4.40134 4.50721 4.70017 4.72800 4.82169 4.92195 5.03255 5.07061 5.12164 5.16592 5.29433 5.33659 5.41933 5.47595 5.53467 5.60546 5.60813 5.67623 5.80871 5.84649 5.93467 6.01021 6.01842 6.10234 6.18444 6.25663 6.35769 6.58489 6.60416 6.70017 6.78940 6.93306 7.03838 7.33537 7.45054 7.85334 8.10804 8.23529 8.94078 9.15032 9.75416 10.37581 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.003705 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.267665 B = 7554.712249 C =10071.195229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.122 4.122 4 C 0.072 3.928 5 O -0.306 6.306 6 C 0.361 3.639 7 C -0.174 4.174 8 C 0.010 3.990 9 C 0.457 3.543 10 O -0.581 6.581 11 N -0.411 5.411 12 C 0.095 3.905 13 C -0.313 4.313 14 H 0.111 0.889 15 C 0.039 3.961 16 N -0.845 5.845 17 Si 0.921 3.079 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.265 1.265 21 C -0.108 4.108 22 C -0.058 4.058 23 C -0.147 4.147 24 C -0.091 4.091 25 C -0.119 4.119 26 C 0.168 3.832 27 N -0.554 5.554 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.152 0.848 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.275 0.725 42 H 0.143 0.857 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 -15.858 -0.804 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.160 4.160 4 C -0.004 4.004 5 O -0.212 6.212 6 C 0.169 3.831 7 C -0.196 4.196 8 C -0.001 4.001 9 C 0.247 3.753 10 O -0.468 6.468 11 N -0.125 5.125 12 C -0.049 4.049 13 C -0.441 4.441 14 H 0.129 0.871 15 C -0.169 4.169 16 N -0.480 5.480 17 Si 0.747 3.253 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.189 1.189 21 C -0.112 4.112 22 C -0.077 4.077 23 C -0.165 4.165 24 C -0.111 4.111 25 C -0.138 4.138 26 C 0.049 3.951 27 N -0.282 5.282 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.170 0.830 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.160 0.840 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.567 -16.214 -0.530 17.151 hybrid contribution 0.477 1.295 -0.434 1.446 sum -5.089 -14.919 -0.965 15.793 Atomic orbital electron populations 1.21753 0.95351 1.01679 1.02097 1.21411 0.96169 0.95759 1.02429 1.21634 0.93068 0.97623 1.03675 1.22618 0.93913 0.81331 1.02513 1.86217 1.17261 1.30390 1.87333 1.19693 0.83700 0.89487 0.90259 1.21514 0.95151 0.95723 1.07186 1.21721 0.91963 0.94643 0.91787 1.17397 0.88680 0.83899 0.85361 1.90636 1.33469 1.80601 1.42116 1.43579 1.25901 1.11502 1.31554 1.21826 0.89052 0.97605 0.96395 1.19791 1.02604 0.85660 1.36002 0.87131 1.25379 0.95362 0.98618 0.97522 1.70086 1.07868 1.32430 1.37639 0.85988 0.80377 0.79252 0.79715 1.20018 1.20745 1.18865 1.19579 0.94620 0.91976 1.04980 1.21215 0.92115 1.00064 0.94264 1.20863 1.00090 0.92177 1.03395 1.20817 0.94395 0.97618 0.98274 1.20570 0.92862 0.96874 1.03459 1.18246 0.87841 0.92077 0.96947 1.67101 1.05866 1.31936 1.23328 0.92549 0.92625 0.92576 0.91685 0.91707 0.90907 0.90861 0.91692 0.91649 0.83036 0.92099 0.90687 0.94235 0.91510 0.83973 0.85839 0.85833 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.12 -1.19 5.58 -26.73 -0.15 -1.34 16 4 C 0.07 0.89 5.28 37.16 0.20 1.08 16 5 O -0.31 -4.84 10.09 -18.47 -0.19 -5.02 16 6 C 0.36 6.43 7.49 -17.17 -0.13 6.30 16 7 C -0.17 -3.34 7.69 -38.71 -0.30 -3.64 16 8 C 0.01 0.21 5.17 -102.50 -0.53 -0.32 16 9 C 0.46 11.33 6.83 -12.39 -0.08 11.24 16 10 O -0.58 -15.99 15.08 5.27 0.08 -15.91 16 11 N -0.41 -10.33 3.01 -123.34 -0.37 -10.70 16 12 C 0.09 2.08 7.42 59.84 0.44 2.53 16 13 C -0.31 -8.36 9.30 -15.05 -0.14 -8.50 16 14 H 0.11 3.09 7.42 -52.48 -0.39 2.70 16 15 C 0.04 0.98 4.71 -17.44 -0.08 0.89 16 16 N -0.84 -21.26 11.24 55.51 0.62 -20.63 16 17 Si 0.92 19.41 29.64 -169.99 -5.04 14.37 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.11 -2.12 5.90 -104.71 -0.62 -2.74 16 22 C -0.06 -1.06 9.28 -39.64 -0.37 -1.43 16 23 C -0.15 -2.13 9.96 -39.87 -0.40 -2.53 16 24 C -0.09 -1.19 9.94 -39.95 -0.40 -1.58 16 25 C -0.12 -1.72 9.99 -39.44 -0.39 -2.12 16 26 C 0.17 2.98 6.61 -84.90 -0.56 2.42 16 27 N -0.55 -9.72 9.00 -11.15 -0.10 -9.82 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.15 2.86 6.23 -52.49 -0.33 2.53 16 38 H 0.06 1.34 7.05 -51.93 -0.37 0.97 16 39 H 0.07 1.69 6.66 -51.93 -0.35 1.35 16 40 H 0.04 0.77 5.93 -51.92 -0.31 0.47 16 41 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 42 H 0.14 2.84 6.39 -52.49 -0.34 2.50 16 43 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -29.73 371.72 -8.96 -38.70 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.27 Total: 4.94 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -3.30 Total: -1.52 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.15 Total: -41.16 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.11 Total: -20.94 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.04 Total: 14.37 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.73 -8.96 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154239244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.379 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds