Wall clock time and date at job start Tue Mar 31 2020 15:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45195 * 109.47267 * 2 1 4 4 C 1.34710 * 117.00184 * 179.97438 * 3 2 1 5 5 O 1.21456 * 119.99775 * 0.02562 * 4 3 2 6 6 C 1.47822 * 119.99862 * 179.97438 * 4 3 2 7 7 C 1.38742 * 121.34707 * 6.08265 * 6 4 3 8 8 C 1.40183 * 119.41840 * 180.02562 * 7 6 4 9 9 N 1.38734 * 118.82588 * 179.97438 * 8 7 6 10 10 C 1.46502 * 120.00016 * 354.02953 * 9 8 7 11 11 H 1.08999 * 109.47238 * 328.12520 * 10 9 8 12 12 C 1.50701 * 109.46926 * 88.12236 * 10 9 8 13 13 H 1.07996 * 120.00012 * 359.97438 * 12 10 9 14 14 C 1.37882 * 120.00126 * 179.97438 * 12 10 9 15 15 N 1.31521 * 119.99531 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00069 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46708 * 90.00544 * 16 14 12 18 18 H 1.48499 * 109.47200 * 210.00145 * 16 14 12 19 19 H 1.48497 * 109.47209 * 330.00186 * 16 14 12 20 20 C 1.52998 * 109.47090 * 208.12026 * 10 9 8 21 21 C 1.52997 * 109.47078 * 63.90029 * 20 10 9 22 22 N 1.31402 * 122.34483 * 0.02562 * 8 7 6 23 23 C 1.33592 * 122.32943 * 359.97438 * 22 8 7 24 24 C 1.40633 * 121.08769 * 179.97438 * 23 22 8 25 25 C 1.36135 * 119.72619 * 180.02562 * 24 23 22 26 26 C 1.39274 * 121.08049 * 0.02562 * 25 24 23 27 27 C 1.36352 * 120.80107 * 359.97226 * 26 25 24 28 28 C 1.39911 * 119.59238 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.46668 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46790 * 299.99099 * 1 2 3 31 31 H 1.08996 * 109.46957 * 60.00028 * 1 2 3 32 32 H 1.08997 * 109.46730 * 240.00127 * 2 1 3 33 33 H 1.09003 * 109.47273 * 120.00571 * 2 1 3 34 34 H 1.08000 * 120.28679 * 359.96809 * 7 6 4 35 35 H 0.96996 * 120.00400 * 174.03519 * 9 8 7 36 36 H 0.96994 * 119.99375 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.46968 * 183.89752 * 20 10 9 38 38 H 1.09001 * 109.47528 * 303.89567 * 20 10 9 39 39 H 1.09003 * 109.47575 * 54.97947 * 21 20 10 40 40 H 1.09004 * 109.47197 * 174.98154 * 21 20 10 41 41 H 1.09002 * 109.47067 * 294.97386 * 21 20 10 42 42 H 1.07993 * 120.13232 * 0.04787 * 24 23 22 43 43 H 1.08003 * 119.45707 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.60236 * 179.69559 * 26 25 24 45 45 H 1.07999 * 120.20388 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3496 1.5454 0.0005 5 8 4.0894 0.5822 0.0005 6 6 3.9145 2.9114 0.0000 7 6 3.1015 4.0288 0.1245 8 6 3.6803 5.3055 0.1185 9 7 2.8558 6.4143 0.2432 10 6 1.4002 6.2481 0.2465 11 1 1.1300 5.3995 -0.3820 12 6 0.9261 6.0008 1.6554 13 1 1.6378 5.9700 2.4671 14 6 -0.4164 5.8138 1.9082 15 7 -1.2830 5.8508 0.9196 16 14 -1.0040 5.5065 3.6545 17 1 -1.3161 6.8035 4.3071 18 1 -2.2246 4.6612 3.6245 19 1 0.0613 4.8107 4.4201 20 6 0.7409 7.5167 -0.2982 21 6 1.1461 7.7147 -1.7602 22 7 4.9758 5.4896 -0.0021 23 6 5.8333 4.4729 -0.1270 24 6 7.2152 4.7000 -0.2549 25 6 8.0642 3.6433 -0.3811 26 6 7.5874 2.3347 -0.3864 27 6 6.2541 2.0768 -0.2645 28 6 5.3540 3.1399 -0.1330 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0321 3.9158 0.2242 35 1 3.2430 7.2996 0.3282 36 1 -2.2274 5.7188 1.0974 37 1 -0.3428 7.4203 -0.2314 38 1 1.0660 8.3759 0.2885 39 1 0.9010 6.8182 -2.3298 40 1 0.6074 8.5669 -2.1744 41 1 2.2187 7.9000 -1.8180 42 1 7.6014 5.7085 -0.2527 43 1 9.1246 3.8227 -0.4795 44 1 8.2818 1.5143 -0.4929 45 1 5.8949 1.0583 -0.2702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:27 Heat of formation + Delta-G solvation = -31.197098 kcal Electronic energy + Delta-G solvation = -28095.055653 eV Core-core repulsion = 24270.442552 eV Total energy + Delta-G solvation = -3824.613101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.71375 -39.67814 -37.65542 -36.50578 -35.55311 -33.11217 -32.58842 -31.58707 -31.37912 -29.77363 -28.72140 -26.75005 -25.19675 -23.49718 -23.25426 -22.34876 -22.05392 -20.72398 -20.14315 -18.25691 -17.34361 -16.93414 -16.79931 -16.57108 -16.44731 -15.37958 -14.92868 -14.50123 -14.44362 -14.32225 -13.91125 -13.78088 -13.63972 -13.12834 -13.03957 -12.91180 -12.71440 -12.59615 -12.01196 -11.90790 -11.71116 -11.55588 -11.44553 -11.38843 -11.17053 -11.04442 -10.82657 -10.48266 -10.35599 -10.29126 -10.11834 -10.08706 -9.91819 -9.77104 -8.95929 -8.83266 -8.58742 -8.13987 -6.94126 -6.20984 -4.33510 0.43883 1.37318 1.89401 2.65174 2.92039 3.18326 3.26148 3.29994 3.42589 3.86960 4.28225 4.55411 4.64685 4.86213 4.95758 4.99913 5.05640 5.11910 5.13364 5.26136 5.33831 5.49139 5.56953 5.62329 5.82597 5.82948 5.89288 6.00942 6.03826 6.08211 6.11322 6.28780 6.35518 6.41983 6.52146 6.62911 6.69577 6.75468 6.81074 6.86041 6.92124 7.18529 7.25967 7.51193 7.62535 7.83415 7.88873 8.04087 8.33754 8.64663 8.81525 9.35429 10.79395 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.004951 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.423876 B = 5654.386518 C = 7535.794834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.065 3.935 3 O -0.342 6.342 4 C 0.522 3.478 5 O -0.505 6.505 6 C -0.063 4.063 7 C -0.106 4.106 8 C 0.437 3.563 9 N -0.685 5.685 10 C 0.268 3.732 11 H 0.046 0.954 12 C -0.535 4.535 13 H 0.062 0.938 14 C 0.070 3.930 15 N -0.885 5.885 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.274 1.274 20 C -0.128 4.128 21 C -0.148 4.148 22 N -0.563 5.563 23 C 0.188 3.812 24 C -0.120 4.120 25 C -0.094 4.094 26 C -0.157 4.157 27 C -0.081 4.081 28 C -0.124 4.124 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.168 0.832 35 H 0.396 0.604 36 H 0.265 0.735 37 H 0.109 0.891 38 H 0.041 0.959 39 H 0.045 0.955 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.420 -6.875 -3.919 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.258 6.258 4 C 0.367 3.633 5 O -0.395 6.395 6 C -0.072 4.072 7 C -0.129 4.129 8 C 0.185 3.815 9 N -0.312 5.312 10 C 0.166 3.834 11 H 0.063 0.937 12 C -0.574 4.574 13 H 0.080 0.920 14 C -0.133 4.133 15 N -0.523 5.523 16 Si 0.723 3.277 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.166 4.166 21 C -0.205 4.205 22 N -0.287 5.287 23 C 0.066 3.934 24 C -0.140 4.140 25 C -0.114 4.114 26 C -0.176 4.176 27 C -0.099 4.099 28 C -0.129 4.129 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.185 0.815 35 H 0.231 0.769 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.147 0.853 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.482 -6.441 -3.966 10.639 hybrid contribution -0.613 -0.690 1.061 1.406 sum 6.869 -7.130 -2.905 10.318 Atomic orbital electron populations 1.21820 0.92329 1.02690 1.04328 1.23057 0.95658 0.79801 1.02395 1.86657 1.23123 1.32443 1.83553 1.20951 0.80741 0.89230 0.72339 1.90654 1.59835 1.42534 1.46503 1.20171 0.92684 0.89849 1.04451 1.22569 1.02849 0.90772 0.96731 1.18458 0.87370 0.87452 0.88233 1.45485 1.07099 1.05530 1.73085 1.19041 0.72325 0.95322 0.96670 0.93659 1.21521 0.92721 1.50034 0.93086 0.92010 1.24876 0.96516 0.94566 0.97348 1.69837 1.02661 1.48864 1.30888 0.86529 0.78356 0.78364 0.84465 1.20525 1.21009 1.19835 1.21871 1.05119 0.97310 0.92312 1.21832 0.99666 1.00138 0.98912 1.67103 1.01882 1.34436 1.25236 1.18322 0.93312 0.86689 0.95092 1.20582 0.90484 0.99506 1.03411 1.20777 0.99359 0.92598 0.98665 1.20758 0.95580 0.96512 1.04761 1.21542 0.92774 0.99963 0.95659 1.19222 0.90844 0.94797 1.08027 0.90385 0.90993 0.91161 0.91238 0.91188 0.81501 0.76931 0.92465 0.87249 0.93988 0.93608 0.94350 0.94254 0.85322 0.86198 0.86409 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.29 37.16 0.38 -1.30 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.34 -5.64 9.61 -40.52 -0.39 -6.03 16 4 C 0.52 9.13 7.89 34.65 0.27 9.41 16 5 O -0.51 -8.90 13.50 -19.23 -0.26 -9.16 16 6 C -0.06 -1.17 6.08 -102.53 -0.62 -1.80 16 7 C -0.11 -2.07 8.68 -38.67 -0.34 -2.40 16 8 C 0.44 8.70 7.60 -155.73 -1.18 7.51 16 9 N -0.69 -13.51 4.69 -55.08 -0.26 -13.77 16 10 C 0.27 5.85 1.64 -69.08 -0.11 5.74 16 11 H 0.05 1.07 6.48 -51.93 -0.34 0.73 16 12 C -0.53 -13.05 8.52 -34.44 -0.29 -13.34 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.07 1.73 5.30 -17.81 -0.09 1.64 16 15 N -0.88 -22.32 11.30 55.43 0.63 -21.70 16 16 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 C -0.13 -2.63 5.32 -26.73 -0.14 -2.78 16 21 C -0.15 -2.63 9.73 37.16 0.36 -2.27 16 22 N -0.56 -10.91 10.27 -10.29 -0.11 -11.01 16 23 C 0.19 3.43 6.62 -84.89 -0.56 2.86 16 24 C -0.12 -1.82 9.99 -39.43 -0.39 -2.22 16 25 C -0.09 -1.23 9.94 -39.95 -0.40 -1.63 16 26 C -0.16 -2.14 9.96 -39.88 -0.40 -2.54 16 27 C -0.08 -1.31 9.31 -39.64 -0.37 -1.68 16 28 C -0.12 -2.25 5.90 -104.70 -0.62 -2.87 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.17 3.45 5.72 -52.49 -0.30 3.15 16 35 H 0.40 7.33 8.74 -40.82 -0.36 6.98 16 36 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 37 H 0.11 2.54 5.97 -51.93 -0.31 2.23 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16 42 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 44 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 45 H 0.15 2.42 5.17 -52.49 -0.27 2.15 16 LS Contribution 374.54 15.07 5.64 5.64 Total: -1.00 -26.46 374.54 -10.22 -36.68 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.18 Total: 11.17 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -4.27 Total: -6.60 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.26 Total: -46.48 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.65 Total: -15.19 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -26.46 -10.22 -36.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.484 kcal (2) G-P(sol) polarization free energy of solvation -26.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds