Wall clock time and date at job start Tue Mar 31 2020 15:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45195 * 109.47267 * 2 1 4 4 C 1.34710 * 117.00184 * 179.97438 * 3 2 1 5 5 O 1.21456 * 119.99775 * 0.02562 * 4 3 2 6 6 C 1.47822 * 119.99862 * 179.97438 * 4 3 2 7 7 C 1.38742 * 121.34707 * 6.08265 * 6 4 3 8 8 C 1.40183 * 119.41840 * 180.02562 * 7 6 4 9 9 N 1.38734 * 118.82588 * 179.97438 * 8 7 6 10 10 C 1.46502 * 120.00016 * 354.02953 * 9 8 7 11 11 H 1.08999 * 109.47238 * 328.12520 * 10 9 8 12 12 C 1.50701 * 109.46926 * 88.12236 * 10 9 8 13 13 H 1.07996 * 120.00012 * 359.97438 * 12 10 9 14 14 C 1.37882 * 120.00126 * 179.97438 * 12 10 9 15 15 N 1.31521 * 119.99531 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00069 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46708 * 90.00544 * 16 14 12 18 18 H 1.48499 * 109.47200 * 210.00145 * 16 14 12 19 19 H 1.48497 * 109.47209 * 330.00186 * 16 14 12 20 20 C 1.52998 * 109.47090 * 208.12026 * 10 9 8 21 21 C 1.52997 * 109.47078 * 63.90029 * 20 10 9 22 22 N 1.31402 * 122.34483 * 0.02562 * 8 7 6 23 23 C 1.33592 * 122.32943 * 359.97438 * 22 8 7 24 24 C 1.40633 * 121.08769 * 179.97438 * 23 22 8 25 25 C 1.36135 * 119.72619 * 180.02562 * 24 23 22 26 26 C 1.39274 * 121.08049 * 0.02562 * 25 24 23 27 27 C 1.36352 * 120.80107 * 359.97226 * 26 25 24 28 28 C 1.39911 * 119.59238 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.46668 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46790 * 299.99099 * 1 2 3 31 31 H 1.08996 * 109.46957 * 60.00028 * 1 2 3 32 32 H 1.08997 * 109.46730 * 240.00127 * 2 1 3 33 33 H 1.09003 * 109.47273 * 120.00571 * 2 1 3 34 34 H 1.08000 * 120.28679 * 359.96809 * 7 6 4 35 35 H 0.96996 * 120.00400 * 174.03519 * 9 8 7 36 36 H 0.96994 * 119.99375 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.46968 * 183.89752 * 20 10 9 38 38 H 1.09001 * 109.47528 * 303.89567 * 20 10 9 39 39 H 1.09003 * 109.47575 * 54.97947 * 21 20 10 40 40 H 1.09004 * 109.47197 * 174.98154 * 21 20 10 41 41 H 1.09002 * 109.47067 * 294.97386 * 21 20 10 42 42 H 1.07993 * 120.13232 * 0.04787 * 24 23 22 43 43 H 1.08003 * 119.45707 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.60236 * 179.69559 * 26 25 24 45 45 H 1.07999 * 120.20388 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3496 1.5454 0.0005 5 8 4.0894 0.5822 0.0005 6 6 3.9145 2.9114 0.0000 7 6 3.1015 4.0288 0.1245 8 6 3.6803 5.3055 0.1185 9 7 2.8558 6.4143 0.2432 10 6 1.4002 6.2481 0.2465 11 1 1.1300 5.3995 -0.3820 12 6 0.9261 6.0008 1.6554 13 1 1.6378 5.9700 2.4671 14 6 -0.4164 5.8138 1.9082 15 7 -1.2830 5.8508 0.9196 16 14 -1.0040 5.5065 3.6545 17 1 -1.3161 6.8035 4.3071 18 1 -2.2246 4.6612 3.6245 19 1 0.0613 4.8107 4.4201 20 6 0.7409 7.5167 -0.2982 21 6 1.1461 7.7147 -1.7602 22 7 4.9758 5.4896 -0.0021 23 6 5.8333 4.4729 -0.1270 24 6 7.2152 4.7000 -0.2549 25 6 8.0642 3.6433 -0.3811 26 6 7.5874 2.3347 -0.3864 27 6 6.2541 2.0768 -0.2645 28 6 5.3540 3.1399 -0.1330 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0321 3.9158 0.2242 35 1 3.2430 7.2996 0.3282 36 1 -2.2274 5.7188 1.0974 37 1 -0.3428 7.4203 -0.2314 38 1 1.0660 8.3759 0.2885 39 1 0.9010 6.8182 -2.3298 40 1 0.6074 8.5669 -2.1744 41 1 2.2187 7.9000 -1.8180 42 1 7.6014 5.7085 -0.2527 43 1 9.1246 3.8227 -0.4795 44 1 8.2818 1.5143 -0.4929 45 1 5.8949 1.0583 -0.2702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:25 Heat of formation + Delta-G solvation = -42.734135 kcal Electronic energy + Delta-G solvation = -28095.555936 eV Core-core repulsion = 24270.442552 eV Total energy + Delta-G solvation = -3825.113384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06461 -41.01484 -39.07546 -37.80082 -37.06852 -34.55118 -34.25988 -32.96184 -32.61627 -31.02498 -30.12876 -28.47484 -26.54632 -25.15676 -24.46826 -23.63455 -23.29114 -22.06694 -21.76687 -19.61645 -18.82654 -18.38547 -18.24496 -18.08104 -17.68560 -16.95129 -16.49387 -15.88610 -15.79030 -15.65287 -15.24110 -15.10064 -15.04864 -14.77283 -14.26043 -14.23828 -14.16323 -13.56441 -13.48025 -13.27793 -13.13287 -13.03187 -12.78832 -12.63241 -12.60072 -12.56967 -12.33840 -12.06285 -11.77814 -11.68527 -11.62292 -11.59194 -11.45734 -11.38516 -10.49393 -10.38698 -10.35316 -9.42487 -8.45900 -8.05175 -6.28059 -0.95101 0.05245 0.62024 1.39756 1.41052 1.43476 1.50820 1.53391 2.12672 2.31418 2.48730 3.13518 3.20738 3.32535 3.57213 3.77654 3.83220 3.97779 4.00368 4.16020 4.24865 4.28868 4.36033 4.44266 4.50088 4.55655 4.61435 4.70336 4.73962 4.83971 4.88070 5.00826 5.04142 5.08287 5.20598 5.25555 5.31317 5.32884 5.44296 5.52094 5.59544 5.64229 5.70733 5.86314 6.02189 6.20998 6.22978 6.50253 6.77477 6.84552 7.24527 7.44877 8.88233 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.004951 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.423876 B = 5654.386518 C = 7535.794834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.523 3.477 5 O -0.508 6.508 6 C -0.065 4.065 7 C -0.125 4.125 8 C 0.422 3.578 9 N -0.688 5.688 10 C 0.281 3.719 11 H 0.023 0.977 12 C -0.544 4.544 13 H 0.045 0.955 14 C 0.034 3.966 15 N -0.902 5.902 16 Si 0.944 3.056 17 H -0.275 1.275 18 H -0.279 1.279 19 H -0.280 1.280 20 C -0.121 4.121 21 C -0.137 4.137 22 N -0.563 5.563 23 C 0.160 3.840 24 C -0.127 4.127 25 C -0.077 4.077 26 C -0.137 4.137 27 C -0.101 4.101 28 C -0.137 4.137 29 H 0.112 0.888 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.147 0.853 35 H 0.401 0.599 36 H 0.266 0.734 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.144 0.856 43 H 0.166 0.834 44 H 0.155 0.845 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.846 -7.783 -4.245 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.273 6.273 4 C 0.368 3.632 5 O -0.398 6.398 6 C -0.074 4.074 7 C -0.149 4.149 8 C 0.171 3.829 9 N -0.316 5.316 10 C 0.178 3.822 11 H 0.041 0.959 12 C -0.582 4.582 13 H 0.063 0.937 14 C -0.167 4.167 15 N -0.541 5.541 16 Si 0.771 3.229 17 H -0.201 1.201 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.160 4.160 21 C -0.194 4.194 22 N -0.287 5.287 23 C 0.038 3.962 24 C -0.147 4.147 25 C -0.097 4.097 26 C -0.155 4.155 27 C -0.120 4.120 28 C -0.142 4.142 29 H 0.130 0.870 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.236 0.764 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.162 0.838 43 H 0.183 0.817 44 H 0.173 0.827 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.930 -7.360 -4.297 13.086 hybrid contribution -1.146 -0.561 1.133 1.706 sum 8.784 -7.921 -3.164 12.244 Atomic orbital electron populations 1.21858 0.90968 1.04566 1.03288 1.23426 0.96740 0.78169 1.03434 1.86664 1.22572 1.34909 1.83200 1.20816 0.81133 0.88835 0.72394 1.90632 1.59978 1.42410 1.46788 1.20418 0.93337 0.90104 1.03519 1.22325 1.01946 0.91419 0.99188 1.18493 0.87757 0.87389 0.89299 1.45150 1.06156 1.05785 1.74547 1.18699 0.73635 0.95009 0.94870 0.95949 1.21677 0.92629 1.49975 0.93964 0.93656 1.25411 0.96692 0.94628 0.99957 1.69928 1.02725 1.49435 1.31979 0.85774 0.77697 0.78209 0.81247 1.20111 1.20477 1.20575 1.21705 1.03290 0.96658 0.94352 1.21704 1.00472 1.00569 0.96678 1.67101 1.01629 1.35251 1.24716 1.18822 0.94575 0.86539 0.96253 1.20896 0.89223 1.01272 1.03274 1.21274 1.01269 0.91455 0.95675 1.21252 0.94926 0.98117 1.01236 1.21620 0.93840 0.99215 0.97285 1.19473 0.90784 0.95633 1.08280 0.86986 0.92422 0.91757 0.89867 0.90427 0.83549 0.76405 0.92443 0.89753 0.93760 0.94385 0.92379 0.93285 0.83787 0.81688 0.82692 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 10.29 71.98 0.74 -2.47 16 2 C 0.06 1.39 6.19 71.98 0.45 1.84 16 3 O -0.36 -12.25 9.61 -56.20 -0.54 -12.79 16 4 C 0.52 18.78 7.89 70.36 0.56 19.34 16 5 O -0.51 -17.83 13.50 19.98 0.27 -17.56 16 6 C -0.07 -2.51 6.08 -18.51 -0.11 -2.62 16 7 C -0.13 -5.21 8.68 22.86 0.20 -5.01 16 8 C 0.42 17.51 7.60 133.71 1.02 18.53 16 9 N -0.69 -28.28 4.69 -328.17 -1.54 -29.82 16 10 C 0.28 12.83 1.64 44.24 0.07 12.90 16 11 H 0.02 1.14 6.48 -2.39 -0.02 1.12 16 12 C -0.54 -27.66 8.52 25.60 0.22 -27.44 16 13 H 0.05 2.41 7.81 -2.91 -0.02 2.38 16 14 C 0.03 1.75 5.30 84.65 0.45 2.20 16 15 N -0.90 -46.90 11.30 21.45 0.24 -46.65 16 16 Si 0.94 41.48 29.54 68.60 2.03 43.50 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 C -0.12 -5.15 5.32 30.59 0.16 -4.98 16 21 C -0.14 -4.87 9.73 71.98 0.70 -4.17 16 22 N -0.56 -22.13 10.27 -186.45 -1.91 -24.04 16 23 C 0.16 5.73 6.62 40.30 0.27 5.99 16 24 C -0.13 -3.52 9.99 22.36 0.22 -3.30 16 25 C -0.08 -1.66 9.94 22.03 0.22 -1.44 16 26 C -0.14 -3.16 9.96 22.08 0.22 -2.94 16 27 C -0.10 -3.08 9.31 22.23 0.21 -2.88 16 28 C -0.14 -4.95 5.90 -19.92 -0.12 -5.06 16 29 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.15 6.62 5.72 -2.91 -0.02 6.60 16 35 H 0.40 15.29 8.74 -92.71 -0.81 14.47 16 36 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 37 H 0.08 4.04 5.97 -2.39 -0.01 4.03 16 38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.05 1.63 7.86 -2.39 -0.02 1.61 16 42 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 43 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 45 H 0.15 4.54 5.17 -2.91 -0.02 4.53 16 Total: -1.00 -59.04 374.54 4.22 -54.82 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.21 Total: 34.05 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 5.46 Total: -1.52 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -3.21 Total: -100.51 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.27 Total: -30.35 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -59.04 4.22 -54.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.089 kcal (2) G-P(sol) polarization free energy of solvation -59.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds