Wall clock time and date at job start Tue Mar 31 2020 16:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.46902 * 2 1 4 4 N 1.46897 * 109.47218 * 119.99806 * 2 1 3 5 5 C 1.47964 * 110.99950 * 179.97438 * 4 2 1 6 6 C 1.53930 * 86.17902 * 222.42171 * 5 4 2 7 7 N 1.46505 * 113.73128 * 138.08390 * 6 5 4 8 8 C 1.38732 * 119.99548 * 156.89774 * 7 6 5 9 9 C 1.38746 * 120.30043 * 359.97438 * 8 7 6 10 10 C 1.38164 * 120.02779 * 180.02562 * 9 8 7 11 11 C 1.50697 * 119.68586 * 179.97438 * 10 9 8 12 12 F 1.39899 * 109.47609 * 89.99773 * 11 10 9 13 13 F 1.39898 * 109.46792 * 209.99529 * 11 10 9 14 14 F 1.39897 * 109.47126 * 329.99205 * 11 10 9 15 15 C 1.38906 * 120.62546 * 359.97306 * 10 9 8 16 16 C 1.36444 * 120.59821 * 0.02562 * 15 10 9 17 17 C 1.40739 * 119.95032 * 0.02575 * 16 15 10 18 18 C 1.41039 * 120.30351 * 180.25111 * 17 16 15 19 19 H 1.07999 * 120.00063 * 153.52617 * 18 17 16 20 20 C 1.39934 * 120.00456 * 333.53045 * 18 17 16 21 21 N 1.30882 * 119.99784 * 343.89769 * 20 18 17 22 22 Si 1.86795 * 120.00373 * 163.89582 * 20 18 17 23 23 H 1.48508 * 109.46846 * 90.00038 * 22 20 18 24 24 H 1.48494 * 109.47412 * 209.99902 * 22 20 18 25 25 H 1.48500 * 109.47311 * 330.00598 * 22 20 18 26 26 C 1.48195 * 111.06985 * 80.56925 * 4 2 1 27 27 H 1.09006 * 109.46917 * 299.99515 * 1 2 3 28 28 H 1.08992 * 109.47157 * 59.99986 * 1 2 3 29 29 H 1.09003 * 109.46616 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46866 * 240.00326 * 2 1 3 31 31 H 1.08997 * 109.47485 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47499 * 300.00241 * 3 2 1 33 33 H 1.09000 * 109.47245 * 60.00178 * 3 2 1 34 34 H 1.08998 * 113.75468 * 108.09864 * 5 4 2 35 35 H 1.09005 * 113.75842 * 336.73990 * 5 4 2 36 36 H 1.09005 * 113.73235 * 269.25254 * 6 5 4 37 37 H 0.96997 * 119.99712 * 336.89054 * 7 6 5 38 38 H 1.07997 * 119.98669 * 0.02562 * 9 8 7 39 39 H 1.07997 * 119.70149 * 180.02562 * 15 10 9 40 40 H 1.07996 * 120.02727 * 180.02562 * 16 15 10 41 41 H 0.96992 * 120.00403 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.75634 * 23.23205 * 26 4 2 43 43 H 1.08998 * 113.82169 * 251.80897 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 3.4989 -0.7127 1.2333 6 6 3.3657 -2.1751 1.6947 7 7 4.3246 -3.0832 1.0604 8 6 4.6636 -4.2772 1.6802 9 6 4.0987 -4.6172 2.9010 10 6 4.4408 -5.8074 3.5136 11 6 3.8230 -6.1688 4.8397 12 9 2.6422 -6.8873 4.6239 13 9 4.7191 -6.9539 5.5731 14 9 3.5343 -5.0007 5.5535 15 6 5.3487 -6.6741 2.9186 16 6 5.9196 -6.3653 1.7184 17 6 5.5897 -5.1588 1.0732 18 6 6.1714 -4.8345 -0.1701 19 1 5.6510 -4.1827 -0.8561 20 6 7.4227 -5.3574 -0.5149 21 7 8.1917 -5.8768 0.4080 22 14 7.9955 -5.3143 -2.2923 23 1 8.7314 -4.0493 -2.5446 24 1 8.8926 -6.4689 -2.5515 25 1 6.8180 -5.3901 -3.1939 26 6 1.9837 -2.1628 1.0178 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9299 -0.0522 1.9856 35 1 3.9622 -0.6020 0.2528 36 1 3.3231 -2.2913 2.7777 37 1 4.7223 -2.8496 0.2071 38 1 3.3913 -3.9512 3.3727 39 1 5.6050 -7.6008 3.4103 40 1 6.6240 -7.0461 1.2639 41 1 9.0589 -6.2396 0.1691 42 1 2.0030 -2.4769 -0.0258 43 1 1.2061 -2.6591 1.5983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168313630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:48 Heat of formation + Delta-G solvation = -102.951884 kcal Electronic energy + Delta-G solvation = -28374.567819 eV Core-core repulsion = 24004.986457 eV Total energy + Delta-G solvation = -4369.581362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.30500 -46.84412 -46.78053 -40.11566 -38.04326 -34.90879 -33.97696 -32.84922 -30.32401 -28.27934 -27.77768 -26.74904 -25.73102 -25.37730 -23.64366 -21.59980 -20.65243 -19.96484 -19.50673 -17.67584 -17.58686 -17.51935 -17.35462 -16.27461 -15.65639 -15.44321 -14.81625 -14.64688 -14.31089 -13.96022 -13.76872 -13.68173 -13.47670 -13.28941 -13.05635 -13.00279 -12.78955 -12.72152 -12.63495 -12.55393 -12.27181 -12.21363 -11.92470 -11.91530 -11.52854 -11.33613 -11.22302 -11.12026 -11.00069 -10.72506 -10.60200 -10.33301 -9.86320 -9.78089 -9.39423 -9.12418 -8.78233 -7.70584 -7.00394 -6.52812 -4.45097 2.40125 2.94048 2.95871 2.99139 3.01407 3.64665 3.76810 3.85655 4.33913 4.42313 4.71010 4.87078 4.90126 4.96445 5.02892 5.07857 5.23574 5.25425 5.36407 5.50420 5.53262 5.60539 5.69128 5.71130 5.76072 5.89930 5.96724 5.99896 6.07157 6.14335 6.28796 6.34900 6.41276 6.72913 6.85020 6.98791 7.11780 7.20258 7.31254 7.54979 7.79403 7.89966 8.17904 8.44243 8.57645 8.71759 8.85945 9.98754 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.007257 B = 0.005188 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3857.187581 B = 5396.050753 C = 8751.335986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.043 3.957 3 C -0.146 4.146 4 N -0.475 5.475 5 C -0.006 4.006 6 C 0.139 3.861 7 N -0.734 5.734 8 C 0.108 3.892 9 C -0.126 4.126 10 C -0.276 4.276 11 C 0.514 3.486 12 F -0.196 7.196 13 F -0.193 7.193 14 F -0.194 7.194 15 C -0.085 4.085 16 C -0.152 4.152 17 C 0.095 3.905 18 C -0.451 4.451 19 H 0.077 0.923 20 C 0.076 3.924 21 N -0.782 5.782 22 Si 0.908 3.092 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.261 1.261 26 C -0.018 4.018 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.397 0.603 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.284 0.716 42 H 0.071 0.929 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.212 7.201 -1.325 10.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 C -0.203 4.203 4 N -0.199 5.199 5 C -0.136 4.136 6 C 0.030 3.970 7 N -0.367 5.367 8 C 0.009 3.991 9 C -0.150 4.150 10 C -0.279 4.279 11 C 0.460 3.540 12 F -0.177 7.177 13 F -0.174 7.174 14 F -0.176 7.176 15 C -0.105 4.105 16 C -0.172 4.172 17 C 0.090 3.910 18 C -0.480 4.480 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.406 5.406 22 Si 0.733 3.267 23 H -0.195 1.195 24 H -0.199 1.199 25 H -0.185 1.185 26 C -0.149 4.149 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.233 0.767 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.142 0.858 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.460 7.464 -0.625 10.571 hybrid contribution 0.781 -0.256 -1.561 1.764 sum -6.679 7.208 -2.185 10.067 Atomic orbital electron populations 1.21720 0.94245 1.01939 1.01702 1.22155 0.96388 0.95635 0.92444 1.21847 1.01102 0.95396 1.02002 1.68553 1.10010 1.06927 1.34365 1.24323 0.90063 0.97859 1.01351 1.22515 0.87841 0.88021 0.98603 1.43916 1.48926 1.19186 1.24702 1.17665 1.00919 0.87608 0.92929 1.19674 1.03173 0.96366 0.95756 1.18792 1.11014 1.01926 0.96143 1.18615 0.75541 0.73353 0.86463 1.93133 1.50341 1.79200 1.95052 1.93092 1.68399 1.75872 1.80045 1.93085 1.93921 1.49517 1.81047 1.20017 0.96427 0.97554 0.96464 1.20716 1.03423 0.97232 0.95852 1.17407 0.90369 0.90206 0.92991 1.19298 1.01624 1.26030 1.01040 0.90490 1.25885 0.96221 0.93010 0.99210 1.69817 1.08765 1.27756 1.34305 0.86299 0.79361 0.78829 0.82260 1.19456 1.19904 1.18454 1.24693 1.00151 0.89060 1.00956 0.91964 0.92639 0.92729 0.93624 0.92587 0.92444 0.91904 0.89206 0.91188 0.87542 0.76738 0.88025 0.88607 0.85753 0.90494 0.91125 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.37 37.16 0.35 -1.04 16 2 C 0.04 0.48 2.33 -67.71 -0.16 0.32 16 3 C -0.15 -1.42 9.09 37.15 0.34 -1.08 16 4 N -0.47 -6.08 5.99 -230.28 -1.38 -7.46 16 5 C -0.01 -0.08 6.48 -2.76 -0.02 -0.10 16 6 C 0.14 2.13 4.17 -69.66 -0.29 1.84 16 7 N -0.73 -13.39 5.45 -52.90 -0.29 -13.68 16 8 C 0.11 2.35 6.68 -83.29 -0.56 1.79 16 9 C -0.13 -2.70 8.59 -39.42 -0.34 -3.04 16 10 C -0.28 -6.05 5.47 -104.40 -0.57 -6.62 16 11 C 0.51 10.33 3.36 36.00 0.12 10.45 16 12 F -0.20 -3.84 17.30 2.25 0.04 -3.80 16 13 F -0.19 -3.81 16.43 2.25 0.04 -3.78 16 14 F -0.19 -3.78 16.43 2.25 0.04 -3.74 16 15 C -0.08 -1.93 9.31 -39.98 -0.37 -2.30 16 16 C -0.15 -3.67 8.63 -39.28 -0.34 -4.01 16 17 C 0.10 2.28 5.57 -106.63 -0.59 1.69 16 18 C -0.45 -10.53 8.48 -37.89 -0.32 -10.85 16 19 H 0.08 1.69 6.72 -52.49 -0.35 1.33 16 20 C 0.08 1.73 5.16 -17.32 -0.09 1.64 16 21 N -0.78 -18.61 10.98 55.55 0.61 -18.00 16 22 Si 0.91 17.08 29.59 -169.99 -5.03 12.05 16 23 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 26 C -0.02 -0.25 7.42 -2.66 -0.02 -0.27 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.57 7.92 -51.93 -0.41 0.16 16 30 H 0.05 0.53 7.63 -51.93 -0.40 0.14 16 31 H 0.06 0.55 7.02 -51.93 -0.36 0.19 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.88 7.63 -51.93 -0.40 0.49 16 36 H 0.11 1.73 6.21 -51.93 -0.32 1.41 16 37 H 0.40 7.12 6.96 -40.82 -0.28 6.83 16 38 H 0.10 2.01 5.60 -52.49 -0.29 1.72 16 39 H 0.10 2.02 7.58 -52.49 -0.40 1.63 16 40 H 0.12 3.09 6.23 -52.49 -0.33 2.77 16 41 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 42 H 0.07 1.00 7.63 -51.93 -0.40 0.60 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -24.29 357.86 -9.05 -33.34 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.61 Total: 11.26 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.86 Total: -11.59 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -1.06 Total: -39.14 kcal Atomic # 9 Polarization: -11.43 SS G_CDS: 0.11 Total: -11.32 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -24.29 -9.05 -33.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168313630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.609 kcal (2) G-P(sol) polarization free energy of solvation -24.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds