Wall clock time and date at job start Tue Mar 31 2020 16:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.46902 * 2 1 4 4 N 1.46897 * 109.47218 * 119.99806 * 2 1 3 5 5 C 1.47964 * 110.99950 * 179.97438 * 4 2 1 6 6 C 1.53930 * 86.17902 * 222.42171 * 5 4 2 7 7 N 1.46505 * 113.73128 * 138.08390 * 6 5 4 8 8 C 1.38732 * 119.99548 * 156.89774 * 7 6 5 9 9 C 1.38746 * 120.30043 * 359.97438 * 8 7 6 10 10 C 1.38164 * 120.02779 * 180.02562 * 9 8 7 11 11 C 1.50697 * 119.68586 * 179.97438 * 10 9 8 12 12 F 1.39899 * 109.47609 * 89.99773 * 11 10 9 13 13 F 1.39898 * 109.46792 * 209.99529 * 11 10 9 14 14 F 1.39897 * 109.47126 * 329.99205 * 11 10 9 15 15 C 1.38906 * 120.62546 * 359.97306 * 10 9 8 16 16 C 1.36444 * 120.59821 * 0.02562 * 15 10 9 17 17 C 1.40739 * 119.95032 * 0.02575 * 16 15 10 18 18 C 1.41039 * 120.30351 * 180.25111 * 17 16 15 19 19 H 1.07999 * 120.00063 * 153.52617 * 18 17 16 20 20 C 1.39934 * 120.00456 * 333.53045 * 18 17 16 21 21 N 1.30882 * 119.99784 * 343.89769 * 20 18 17 22 22 Si 1.86795 * 120.00373 * 163.89582 * 20 18 17 23 23 H 1.48508 * 109.46846 * 90.00038 * 22 20 18 24 24 H 1.48494 * 109.47412 * 209.99902 * 22 20 18 25 25 H 1.48500 * 109.47311 * 330.00598 * 22 20 18 26 26 C 1.48195 * 111.06985 * 80.56925 * 4 2 1 27 27 H 1.09006 * 109.46917 * 299.99515 * 1 2 3 28 28 H 1.08992 * 109.47157 * 59.99986 * 1 2 3 29 29 H 1.09003 * 109.46616 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46866 * 240.00326 * 2 1 3 31 31 H 1.08997 * 109.47485 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47499 * 300.00241 * 3 2 1 33 33 H 1.09000 * 109.47245 * 60.00178 * 3 2 1 34 34 H 1.08998 * 113.75468 * 108.09864 * 5 4 2 35 35 H 1.09005 * 113.75842 * 336.73990 * 5 4 2 36 36 H 1.09005 * 113.73235 * 269.25254 * 6 5 4 37 37 H 0.96997 * 119.99712 * 336.89054 * 7 6 5 38 38 H 1.07997 * 119.98669 * 0.02562 * 9 8 7 39 39 H 1.07997 * 119.70149 * 180.02562 * 15 10 9 40 40 H 1.07996 * 120.02727 * 180.02562 * 16 15 10 41 41 H 0.96992 * 120.00403 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.75634 * 23.23205 * 26 4 2 43 43 H 1.08998 * 113.82169 * 251.80897 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 3.4989 -0.7127 1.2333 6 6 3.3657 -2.1751 1.6947 7 7 4.3246 -3.0832 1.0604 8 6 4.6636 -4.2772 1.6802 9 6 4.0987 -4.6172 2.9010 10 6 4.4408 -5.8074 3.5136 11 6 3.8230 -6.1688 4.8397 12 9 2.6422 -6.8873 4.6239 13 9 4.7191 -6.9539 5.5731 14 9 3.5343 -5.0007 5.5535 15 6 5.3487 -6.6741 2.9186 16 6 5.9196 -6.3653 1.7184 17 6 5.5897 -5.1588 1.0732 18 6 6.1714 -4.8345 -0.1701 19 1 5.6510 -4.1827 -0.8561 20 6 7.4227 -5.3574 -0.5149 21 7 8.1917 -5.8768 0.4080 22 14 7.9955 -5.3143 -2.2923 23 1 8.7314 -4.0493 -2.5446 24 1 8.8926 -6.4689 -2.5515 25 1 6.8180 -5.3901 -3.1939 26 6 1.9837 -2.1628 1.0178 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9299 -0.0522 1.9856 35 1 3.9622 -0.6020 0.2528 36 1 3.3231 -2.2913 2.7777 37 1 4.7223 -2.8496 0.2071 38 1 3.3913 -3.9512 3.3727 39 1 5.6050 -7.6008 3.4103 40 1 6.6240 -7.0461 1.2639 41 1 9.0589 -6.2396 0.1691 42 1 2.0030 -2.4769 -0.0258 43 1 1.2061 -2.6591 1.5983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168313630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:46 Heat of formation + Delta-G solvation = -114.988379 kcal Electronic energy + Delta-G solvation = -28375.089761 eV Core-core repulsion = 24004.986457 eV Total energy + Delta-G solvation = -4370.103304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.91899 -48.44961 -48.38746 -41.25830 -39.68231 -36.15681 -35.69958 -34.09616 -32.04132 -29.85654 -28.64508 -28.43744 -26.96424 -26.39297 -25.31517 -23.14497 -22.22216 -21.11314 -20.77280 -19.32553 -19.23810 -19.13301 -18.99016 -17.44735 -17.03652 -16.85235 -16.35998 -15.78423 -15.64050 -15.43418 -15.28909 -15.06165 -14.89739 -14.88601 -14.64641 -14.60335 -14.23124 -14.13315 -14.01517 -13.86143 -13.74280 -13.26728 -13.08288 -13.01109 -12.88528 -12.83605 -12.57707 -12.40199 -12.18068 -12.08598 -11.71085 -11.61674 -11.50071 -11.36728 -11.08999 -10.65081 -9.82331 -9.49380 -8.70801 -8.16894 -6.21302 0.66708 1.22365 1.41277 1.46548 1.54631 2.00531 2.19380 2.62264 2.70918 3.10104 3.28141 3.42547 3.47849 3.68020 3.88878 3.90198 3.98412 4.07394 4.15164 4.42029 4.45231 4.46060 4.56030 4.68208 4.79019 4.85087 4.91739 4.92010 4.98649 5.03848 5.07284 5.14060 5.15230 5.27308 5.35320 5.47893 5.49341 5.56345 5.81634 6.01418 6.11207 6.15463 6.44028 6.73291 6.85355 7.07744 7.23604 8.30749 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.007257 B = 0.005188 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3857.187581 B = 5396.050753 C = 8751.335986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.038 3.962 3 C -0.142 4.142 4 N -0.476 5.476 5 C 0.005 3.995 6 C 0.128 3.872 7 N -0.729 5.729 8 C 0.112 3.888 9 C -0.136 4.136 10 C -0.280 4.280 11 C 0.522 3.478 12 F -0.191 7.191 13 F -0.190 7.190 14 F -0.188 7.188 15 C -0.095 4.095 16 C -0.172 4.172 17 C 0.067 3.933 18 C -0.471 4.471 19 H 0.086 0.914 20 C 0.038 3.962 21 N -0.816 5.816 22 Si 0.978 3.022 23 H -0.263 1.263 24 H -0.272 1.272 25 H -0.258 1.258 26 C -0.010 4.010 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.398 0.602 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.289 0.711 42 H 0.069 0.931 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 8.717 -2.180 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 C -0.199 4.199 4 N -0.200 5.200 5 C -0.125 4.125 6 C 0.021 3.979 7 N -0.361 5.361 8 C 0.011 3.989 9 C -0.160 4.160 10 C -0.283 4.283 11 C 0.468 3.532 12 F -0.173 7.173 13 F -0.171 7.171 14 F -0.170 7.170 15 C -0.115 4.115 16 C -0.193 4.193 17 C 0.062 3.938 18 C -0.500 4.500 19 H 0.104 0.896 20 C -0.178 4.178 21 N -0.441 5.441 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.197 1.197 25 H -0.182 1.182 26 C -0.141 4.141 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.234 0.766 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.288 9.012 -1.472 12.332 hybrid contribution 0.969 -0.684 -1.238 1.715 sum -7.318 8.328 -2.710 11.413 Atomic orbital electron populations 1.21702 0.93361 1.01720 1.02494 1.22264 0.97143 0.96240 0.91397 1.21821 1.00957 0.94402 1.02763 1.68578 1.09752 1.06125 1.35501 1.24264 0.90454 0.95967 1.01789 1.22716 0.88115 0.88948 0.98138 1.43991 1.49123 1.18445 1.24587 1.17793 0.99846 0.88332 0.92907 1.19862 1.03673 0.96627 0.95866 1.19023 1.10529 1.01864 0.96888 1.18301 0.75557 0.73557 0.85785 1.93140 1.49987 1.79089 1.95035 1.93099 1.68393 1.75794 1.79860 1.93095 1.93857 1.49218 1.80781 1.20125 0.96812 0.98260 0.96322 1.20682 1.04164 0.97652 0.96819 1.17724 0.91550 0.90744 0.93819 1.19556 1.02237 1.26884 1.01285 0.89649 1.26680 0.96002 0.92227 1.02922 1.69882 1.09341 1.28604 1.36277 0.85245 0.78769 0.78875 0.77161 1.18803 1.19709 1.18178 1.24561 0.98888 0.90031 1.00575 0.92113 0.90928 0.93453 0.93955 0.92775 0.90842 0.92016 0.88404 0.90537 0.88404 0.76639 0.86483 0.87707 0.87301 0.90004 0.91280 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.37 71.99 0.67 -1.75 16 2 C 0.04 0.77 2.33 44.92 0.10 0.88 16 3 C -0.14 -2.41 9.09 71.98 0.65 -1.75 16 4 N -0.48 -11.33 5.99 -882.46 -5.28 -16.61 16 5 C 0.00 0.11 6.48 86.41 0.56 0.67 16 6 C 0.13 3.79 4.17 46.54 0.19 3.99 16 7 N -0.73 -26.22 5.45 -321.28 -1.75 -27.97 16 8 C 0.11 4.89 6.68 38.99 0.26 5.15 16 9 C -0.14 -5.80 8.59 22.37 0.19 -5.61 16 10 C -0.28 -12.23 5.47 -19.72 -0.11 -12.34 16 11 C 0.52 20.46 3.36 71.24 0.24 20.70 16 12 F -0.19 -7.27 17.30 44.97 0.78 -6.49 16 13 F -0.19 -7.34 16.43 44.97 0.74 -6.61 16 14 F -0.19 -7.05 16.43 44.97 0.74 -6.31 16 15 C -0.10 -4.41 9.31 22.01 0.21 -4.20 16 16 C -0.17 -8.59 8.63 22.46 0.19 -8.40 16 17 C 0.07 3.25 5.57 -21.17 -0.12 3.13 16 18 C -0.47 -22.21 8.48 23.37 0.20 -22.01 16 19 H 0.09 3.74 6.72 -2.91 -0.02 3.72 16 20 C 0.04 1.74 5.16 85.25 0.44 2.18 16 21 N -0.82 -39.62 10.98 21.83 0.24 -39.38 16 22 Si 0.98 34.80 29.59 68.60 2.03 36.83 16 23 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 24 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 25 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 26 C -0.01 -0.26 7.42 86.35 0.64 0.38 16 27 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.91 7.92 -2.39 -0.02 0.89 16 30 H 0.04 0.90 7.63 -2.39 -0.02 0.88 16 31 H 0.05 0.94 7.02 -2.39 -0.02 0.92 16 32 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 1.78 7.63 -2.38 -0.02 1.76 16 36 H 0.10 3.08 6.21 -2.38 -0.01 3.07 16 37 H 0.40 14.04 6.96 -92.71 -0.64 13.40 16 38 H 0.12 4.54 5.60 -2.91 -0.02 4.52 16 39 H 0.10 4.50 7.58 -2.91 -0.02 4.48 16 40 H 0.11 5.66 6.23 -2.91 -0.02 5.65 16 41 H 0.29 12.80 8.30 -92.71 -0.77 12.03 16 42 H 0.07 1.86 7.63 -2.39 -0.02 1.84 16 43 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -51.37 357.86 2.23 -49.14 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 0.41 Total: 36.38 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 4.33 Total: -18.98 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -6.79 Total: -83.96 kcal Atomic # 9 Polarization: -21.66 SS G_CDS: 2.26 Total: -19.41 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Total: -51.37 2.23 -49.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168313630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.853 kcal (2) G-P(sol) polarization free energy of solvation -51.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds