Wall clock time and date at job start Tue Mar 31 2020 16:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47005 * 2 1 4 4 N 1.46896 * 109.47167 * 180.02562 * 3 2 1 5 5 C 1.47070 * 111.00084 * 313.42804 * 4 3 2 6 6 C 1.53068 * 109.39523 * 177.89667 * 5 4 3 7 7 O 1.43081 * 109.42389 * 56.51070 * 6 5 4 8 8 C 1.42898 * 113.56536 * 301.53428 * 7 6 5 9 9 H 1.09004 * 109.47873 * 299.08555 * 8 7 6 10 10 C 1.52989 * 109.88425 * 178.81667 * 8 7 6 11 11 C 1.53247 * 109.14197 * 178.42664 * 10 8 7 12 12 N 1.46895 * 109.02284 * 54.33576 * 11 10 8 13 13 C 1.34783 * 120.55660 * 126.90796 * 12 11 10 14 14 O 1.21280 * 119.99718 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99995 * 359.97438 * 13 12 11 16 16 S 1.80995 * 109.46946 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99836 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00503 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00158 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00366 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99835 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47192 * 90.00423 * 21 19 17 23 23 H 1.48502 * 109.47346 * 209.99682 * 21 19 17 24 24 H 1.48495 * 109.47254 * 330.00077 * 21 19 17 25 25 C 1.47018 * 118.86661 * 307.05069 * 12 11 10 26 26 C 1.46905 * 111.00080 * 190.00296 * 4 3 2 27 27 H 1.08998 * 109.71826 * 62.51516 * 26 4 3 28 28 H 1.08993 * 109.47743 * 59.99708 * 1 2 3 29 29 H 1.09003 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47167 * 299.99545 * 1 2 3 31 31 H 1.08999 * 109.47167 * 240.00455 * 2 1 3 32 32 H 1.08993 * 109.47743 * 120.00292 * 2 1 3 33 33 H 1.08999 * 109.46786 * 60.00222 * 3 2 1 34 34 H 1.08999 * 109.47141 * 300.00227 * 3 2 1 35 35 H 1.08994 * 109.48365 * 297.87579 * 5 4 3 36 36 H 1.09002 * 109.48269 * 57.92318 * 5 4 3 37 37 H 1.08999 * 109.48367 * 176.49687 * 6 5 4 38 38 H 1.08995 * 109.48503 * 296.52800 * 6 5 4 39 39 H 1.08997 * 109.52109 * 58.53196 * 10 8 7 40 40 H 1.08996 * 109.52349 * 298.32703 * 10 8 7 41 41 H 1.09002 * 109.55974 * 174.22853 * 11 10 8 42 42 H 1.09000 * 109.56251 * 294.44899 * 11 10 8 43 43 H 1.08999 * 109.47069 * 300.00423 * 15 13 12 44 44 H 1.09001 * 109.46847 * 60.00161 * 15 13 12 45 45 H 0.96993 * 120.00459 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.52713 * 293.57713 * 25 12 11 47 47 H 1.09003 * 109.78242 * 173.16377 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0364 0.4986 0.9961 6 6 5.5656 0.4894 0.9282 7 8 6.0585 1.8184 1.1229 8 6 5.5650 2.7569 0.1649 9 1 5.8742 2.4522 -0.8350 10 6 6.1195 4.1502 0.4679 11 6 5.6118 5.1344 -0.5914 12 7 4.1457 5.0627 -0.6480 13 6 3.4000 6.1791 -0.5296 14 8 2.1902 6.1081 -0.5773 15 6 4.0694 7.5155 -0.3368 16 16 2.8095 8.8089 -0.2118 17 6 3.8411 10.2213 0.0017 18 1 4.9149 10.1076 0.0220 19 6 3.2738 11.4799 0.1449 20 7 4.0444 12.5349 0.3049 21 14 1.4165 11.6765 0.1106 22 1 0.8798 11.5507 1.4895 23 1 1.0702 13.0135 -0.4351 24 1 0.8229 10.6218 -0.7498 25 6 3.5058 3.7520 -0.8327 26 6 4.0354 2.7932 0.2376 27 1 3.7255 3.1402 1.2233 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.7186 0.8064 1.9922 36 1 3.6572 -0.5015 0.7861 37 1 5.9602 -0.1624 1.7076 38 1 5.8839 0.1231 -0.0478 39 1 7.2089 4.1213 0.4459 40 1 5.7823 4.4699 1.4538 41 1 5.9178 6.1463 -0.3257 42 1 6.0278 4.8707 -1.5637 43 1 4.6620 7.4964 0.5779 44 1 4.7197 7.7221 -1.1868 45 1 3.6480 13.4145 0.4046 46 1 3.7473 3.3650 -1.8227 47 1 2.4250 3.8517 -0.7323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176929853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:12 Heat of formation + Delta-G solvation = -73.420830 kcal Electronic energy + Delta-G solvation = -26740.701059 eV Core-core repulsion = 23049.700951 eV Total energy + Delta-G solvation = -3691.000108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.88135 -39.23560 -37.00936 -36.43467 -33.42784 -32.45649 -32.32284 -31.10694 -29.55371 -28.15196 -25.81161 -25.51054 -25.04650 -22.98357 -22.66846 -21.03573 -20.46732 -19.30039 -17.77912 -17.16609 -16.66248 -16.27674 -16.07247 -15.85023 -15.49835 -15.16167 -14.95936 -14.71097 -14.60680 -14.28390 -13.79788 -13.65215 -13.50912 -13.28961 -13.00928 -12.79578 -12.58271 -12.50452 -12.18052 -12.09103 -12.02900 -11.65786 -11.54127 -11.30622 -11.26617 -11.14303 -11.01894 -10.84896 -10.67974 -10.58066 -9.87193 -9.83088 -9.52588 -9.01549 -8.75662 -8.69377 -8.50772 -6.93668 -6.29936 -4.01926 2.61517 2.85853 3.07567 3.32155 3.38699 3.46584 3.49685 3.59886 4.27023 4.32105 4.45445 4.50299 4.61730 4.62543 4.64574 4.80100 4.84296 4.85491 4.96456 5.00056 5.02206 5.06984 5.09168 5.18071 5.24987 5.29716 5.37750 5.41534 5.45199 5.50099 5.54917 5.60000 5.66128 5.70623 5.72604 5.77362 5.83425 5.90139 5.95483 5.97351 6.36501 6.59210 6.67291 6.87487 7.38077 7.93085 8.37163 8.40540 9.16252 10.79277 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.002927 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.632657 B = 9562.872324 C =10835.570404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.049 3.951 4 N -0.529 5.529 5 C 0.013 3.987 6 C 0.064 3.936 7 O -0.380 6.380 8 C 0.101 3.899 9 H 0.070 0.930 10 C -0.128 4.128 11 C 0.110 3.890 12 N -0.619 5.619 13 C 0.535 3.465 14 O -0.518 6.518 15 C -0.122 4.122 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.089 0.911 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.124 3.876 26 C 0.041 3.959 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.271 0.729 46 H 0.075 0.925 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.516 -27.641 -0.807 27.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.078 4.078 4 N -0.255 5.255 5 C -0.115 4.115 6 C -0.013 4.013 7 O -0.299 6.299 8 C 0.043 3.957 9 H 0.087 0.913 10 C -0.167 4.167 11 C -0.014 4.014 12 N -0.356 5.356 13 C 0.323 3.677 14 O -0.392 6.392 15 C -0.272 4.272 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.107 0.893 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C 0.000 4.000 26 C -0.069 4.069 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.014 -27.626 -1.176 27.669 hybrid contribution 0.312 0.556 0.804 1.026 sum 1.326 -27.070 -0.372 27.105 Atomic orbital electron populations 1.21738 0.95259 1.01794 1.02245 1.21664 0.96061 0.96167 1.02441 1.22292 0.86359 0.97459 1.01722 1.62315 1.08207 1.06360 1.48596 1.22898 0.96360 0.98010 0.94222 1.22658 0.92223 0.84348 1.02045 1.87992 1.69771 1.18169 1.53964 1.22126 0.91115 0.89756 0.92733 0.91254 1.21941 1.01872 0.92255 1.00599 1.21752 0.79590 1.01064 0.98969 1.48089 1.06679 1.06476 1.74334 1.20335 0.87249 0.84985 0.75091 1.90687 1.13834 1.86028 1.48650 1.23317 1.03693 0.94743 1.05483 1.84803 1.11196 0.99792 1.95850 1.22300 0.95464 0.91482 1.57571 0.89347 1.24707 0.98743 0.94641 0.93194 1.69932 1.35633 0.98933 1.47165 0.86741 0.85360 0.79448 0.80340 1.19228 1.19930 1.15921 1.21456 0.99466 0.81364 0.97680 1.22661 0.96101 0.88999 0.99102 0.92604 0.92339 0.92502 0.92690 0.91055 0.91871 0.94372 0.89919 0.93930 0.88904 0.88448 0.92261 0.89183 0.90382 0.88216 0.90810 0.88430 0.88329 0.91924 0.90672 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.15 0.37 -0.67 16 2 C -0.13 -0.90 5.21 -26.73 -0.14 -1.04 16 3 C 0.05 0.45 4.51 -3.82 -0.02 0.43 16 4 N -0.53 -5.03 4.70 -226.26 -1.06 -6.09 16 5 C 0.01 0.11 4.93 -3.70 -0.02 0.09 16 6 C 0.06 0.51 7.00 37.19 0.26 0.77 16 7 O -0.38 -4.06 10.50 -35.23 -0.37 -4.43 16 8 C 0.10 1.02 2.62 -26.65 -0.07 0.95 16 9 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 10 C -0.13 -1.23 5.76 -26.61 -0.15 -1.39 16 11 C 0.11 1.13 6.33 -3.70 -0.02 1.11 16 12 N -0.62 -8.41 2.98 -172.71 -0.51 -8.92 16 13 C 0.54 9.64 7.72 -10.98 -0.08 9.55 16 14 O -0.52 -11.16 15.28 5.56 0.08 -11.07 16 15 C -0.12 -2.34 4.50 36.01 0.16 -2.18 16 16 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 17 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 18 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.46 13.97 55.49 0.78 -25.69 16 21 Si 0.86 21.75 27.74 -169.99 -4.71 17.03 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 25 C 0.12 1.51 5.26 -3.68 -0.02 1.49 16 26 C 0.04 0.45 1.93 -67.54 -0.13 0.32 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.42 6.28 -51.93 -0.33 0.09 16 33 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.08 0.80 7.01 -51.93 -0.36 0.43 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.59 6.07 -51.93 -0.31 0.28 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.03 5.92 -51.93 -0.31 0.72 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 1.75 7.68 -51.92 -0.40 1.35 16 44 H 0.10 1.75 7.95 -51.92 -0.41 1.34 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.10 1.34 5.83 -51.93 -0.30 1.04 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -33.37 372.88 -9.75 -43.12 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -7.92 Total: -1.51 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 0.35 Total: -2.45 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: -0.80 Total: -40.70 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.28 Total: -15.50 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.37 -9.75 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176929853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.303 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds