Wall clock time and date at job start Tue Mar 31 2020 16:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47005 * 2 1 4 4 N 1.46896 * 109.47167 * 180.02562 * 3 2 1 5 5 C 1.47070 * 111.00084 * 313.42804 * 4 3 2 6 6 C 1.53068 * 109.39523 * 177.89667 * 5 4 3 7 7 O 1.43081 * 109.42389 * 56.51070 * 6 5 4 8 8 C 1.42898 * 113.56536 * 301.53428 * 7 6 5 9 9 H 1.09004 * 109.47873 * 299.08555 * 8 7 6 10 10 C 1.52989 * 109.88425 * 178.81667 * 8 7 6 11 11 C 1.53247 * 109.14197 * 178.42664 * 10 8 7 12 12 N 1.46895 * 109.02284 * 54.33576 * 11 10 8 13 13 C 1.34783 * 120.55660 * 126.90796 * 12 11 10 14 14 O 1.21280 * 119.99718 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99995 * 359.97438 * 13 12 11 16 16 S 1.80995 * 109.46946 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99836 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00503 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00158 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00366 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99835 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47192 * 90.00423 * 21 19 17 23 23 H 1.48502 * 109.47346 * 209.99682 * 21 19 17 24 24 H 1.48495 * 109.47254 * 330.00077 * 21 19 17 25 25 C 1.47018 * 118.86661 * 307.05069 * 12 11 10 26 26 C 1.46905 * 111.00080 * 190.00296 * 4 3 2 27 27 H 1.08998 * 109.71826 * 62.51516 * 26 4 3 28 28 H 1.08993 * 109.47743 * 59.99708 * 1 2 3 29 29 H 1.09003 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47167 * 299.99545 * 1 2 3 31 31 H 1.08999 * 109.47167 * 240.00455 * 2 1 3 32 32 H 1.08993 * 109.47743 * 120.00292 * 2 1 3 33 33 H 1.08999 * 109.46786 * 60.00222 * 3 2 1 34 34 H 1.08999 * 109.47141 * 300.00227 * 3 2 1 35 35 H 1.08994 * 109.48365 * 297.87579 * 5 4 3 36 36 H 1.09002 * 109.48269 * 57.92318 * 5 4 3 37 37 H 1.08999 * 109.48367 * 176.49687 * 6 5 4 38 38 H 1.08995 * 109.48503 * 296.52800 * 6 5 4 39 39 H 1.08997 * 109.52109 * 58.53196 * 10 8 7 40 40 H 1.08996 * 109.52349 * 298.32703 * 10 8 7 41 41 H 1.09002 * 109.55974 * 174.22853 * 11 10 8 42 42 H 1.09000 * 109.56251 * 294.44899 * 11 10 8 43 43 H 1.08999 * 109.47069 * 300.00423 * 15 13 12 44 44 H 1.09001 * 109.46847 * 60.00161 * 15 13 12 45 45 H 0.96993 * 120.00459 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.52713 * 293.57713 * 25 12 11 47 47 H 1.09003 * 109.78242 * 173.16377 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0364 0.4986 0.9961 6 6 5.5656 0.4894 0.9282 7 8 6.0585 1.8184 1.1229 8 6 5.5650 2.7569 0.1649 9 1 5.8742 2.4522 -0.8350 10 6 6.1195 4.1502 0.4679 11 6 5.6118 5.1344 -0.5914 12 7 4.1457 5.0627 -0.6480 13 6 3.4000 6.1791 -0.5296 14 8 2.1902 6.1081 -0.5773 15 6 4.0694 7.5155 -0.3368 16 16 2.8095 8.8089 -0.2118 17 6 3.8411 10.2213 0.0017 18 1 4.9149 10.1076 0.0220 19 6 3.2738 11.4799 0.1449 20 7 4.0444 12.5349 0.3049 21 14 1.4165 11.6765 0.1106 22 1 0.8798 11.5507 1.4895 23 1 1.0702 13.0135 -0.4351 24 1 0.8229 10.6218 -0.7498 25 6 3.5058 3.7520 -0.8327 26 6 4.0354 2.7932 0.2376 27 1 3.7255 3.1402 1.2233 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.7186 0.8064 1.9922 36 1 3.6572 -0.5015 0.7861 37 1 5.9602 -0.1624 1.7076 38 1 5.8839 0.1231 -0.0478 39 1 7.2089 4.1213 0.4459 40 1 5.7823 4.4699 1.4538 41 1 5.9178 6.1463 -0.3257 42 1 6.0278 4.8707 -1.5637 43 1 4.6620 7.4964 0.5779 44 1 4.7197 7.7221 -1.1868 45 1 3.6480 13.4145 0.4046 46 1 3.7473 3.3650 -1.8227 47 1 2.4250 3.8517 -0.7323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176929853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:10 Heat of formation + Delta-G solvation = -96.684459 kcal Electronic energy + Delta-G solvation = -26741.709845 eV Core-core repulsion = 23049.700951 eV Total energy + Delta-G solvation = -3692.008894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.82373 -40.40803 -37.78599 -37.51477 -34.67776 -34.15367 -33.30882 -32.05827 -30.76394 -29.01544 -27.87085 -26.59573 -25.82496 -23.83485 -23.47717 -21.87423 -21.22427 -20.62023 -19.58838 -18.44559 -17.56043 -17.19912 -17.14083 -16.99599 -16.87709 -16.39135 -16.24901 -15.66133 -15.50939 -15.35268 -15.20730 -14.90138 -14.60754 -14.42082 -14.18264 -13.89432 -13.59075 -13.36728 -13.33747 -13.29131 -13.02976 -12.94110 -12.75164 -12.63920 -12.42425 -12.29203 -12.05256 -11.88011 -11.80921 -11.53887 -11.37740 -11.17897 -11.01579 -10.59150 -10.52721 -9.85883 -9.54660 -9.01505 -8.51993 -6.23054 0.94670 1.30354 1.42700 1.44865 1.51612 1.92766 2.24133 2.60761 2.68708 2.72023 2.86316 3.38051 3.61298 3.63896 3.80980 3.87129 3.95815 3.99337 4.11308 4.14107 4.16884 4.21343 4.32684 4.36977 4.39457 4.42110 4.48203 4.58365 4.62387 4.66465 4.70765 4.75122 4.80121 4.86890 4.93069 4.94782 5.11518 5.14982 5.22634 5.30092 5.37870 5.70643 5.82643 5.86411 6.11374 6.14036 6.16457 6.93297 6.99545 8.60320 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.002927 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.632657 B = 9562.872324 C =10835.570404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.049 3.951 4 N -0.526 5.526 5 C 0.013 3.987 6 C 0.060 3.940 7 O -0.397 6.397 8 C 0.104 3.896 9 H 0.083 0.917 10 C -0.123 4.123 11 C 0.103 3.897 12 N -0.607 5.607 13 C 0.536 3.464 14 O -0.562 6.562 15 C -0.106 4.106 16 S -0.178 6.178 17 C -0.526 4.526 18 H 0.065 0.935 19 C 0.047 3.953 20 N -0.916 5.916 21 Si 0.912 3.088 22 H -0.264 1.264 23 H -0.259 1.259 24 H -0.237 1.237 25 C 0.127 3.873 26 C 0.049 3.951 27 H 0.027 0.973 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.019 0.981 34 H 0.074 0.926 35 H 0.029 0.971 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.277 0.723 46 H 0.094 0.906 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.248 -30.065 -1.451 30.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.078 4.078 4 N -0.251 5.251 5 C -0.115 4.115 6 C -0.016 4.016 7 O -0.316 6.316 8 C 0.046 3.954 9 H 0.101 0.899 10 C -0.161 4.161 11 C -0.018 4.018 12 N -0.341 5.341 13 C 0.324 3.676 14 O -0.440 6.440 15 C -0.257 4.257 16 S 0.048 5.952 17 C -0.674 4.674 18 H 0.083 0.917 19 C -0.159 4.159 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.188 1.188 23 H -0.183 1.183 24 H -0.161 1.161 25 C 0.004 3.996 26 C -0.062 4.062 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.037 0.963 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.088 0.912 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.792 -30.087 -1.820 30.195 hybrid contribution 0.207 1.143 1.016 1.543 sum 1.999 -28.944 -0.804 29.024 Atomic orbital electron populations 1.21741 0.95104 1.02503 1.01683 1.21616 0.96137 0.94603 1.03175 1.22296 0.86372 0.98760 1.00403 1.62377 1.08223 1.05609 1.48938 1.23000 0.96810 0.98524 0.93133 1.22878 0.91795 0.83443 1.03482 1.87973 1.69987 1.19315 1.54316 1.22125 0.89926 0.90049 0.93349 0.89936 1.21903 1.03128 0.91806 0.99280 1.22063 0.77220 1.01646 1.00905 1.48083 1.08047 1.05752 1.72239 1.20077 0.86757 0.85543 0.75234 1.90673 1.15543 1.86618 1.51166 1.23286 1.01934 0.93365 1.07090 1.84752 1.13683 1.00753 1.95987 1.22430 0.94882 0.93050 1.56993 0.91699 1.25532 1.02908 0.94491 0.92965 1.70006 1.37522 0.99604 1.48272 0.85895 0.80314 0.79889 0.80449 1.18846 1.18282 1.16117 1.21509 0.98270 0.80778 0.99071 1.22523 0.97168 0.89527 0.96934 0.95510 0.92768 0.91122 0.93450 0.90275 0.90982 0.96314 0.90745 0.95221 0.86700 0.86450 0.91162 0.86923 0.92095 0.88064 0.87844 0.86967 0.86442 0.91355 0.88824 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.50 5.21 30.59 0.16 -1.34 16 3 C 0.05 0.88 4.51 86.30 0.39 1.27 16 4 N -0.53 -9.31 4.70 -869.76 -4.09 -13.40 16 5 C 0.01 0.18 4.93 86.29 0.43 0.61 16 6 C 0.06 0.80 7.00 72.00 0.50 1.30 16 7 O -0.40 -7.58 10.50 -148.98 -1.56 -9.14 16 8 C 0.10 1.87 2.62 30.65 0.08 1.95 16 9 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 10 C -0.12 -2.10 5.76 30.67 0.18 -1.92 16 11 C 0.10 1.88 6.33 86.39 0.55 2.43 16 12 N -0.61 -15.77 2.98 -818.71 -2.44 -18.21 16 13 C 0.54 19.11 7.72 87.66 0.68 19.79 16 14 O -0.56 -24.58 15.28 -3.03 -0.05 -24.63 16 15 C -0.11 -4.01 4.50 71.24 0.32 -3.69 16 16 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 17 C -0.53 -30.47 10.04 67.95 0.68 -29.78 16 18 H 0.06 3.94 8.03 -2.91 -0.02 3.91 16 19 C 0.05 2.73 5.50 84.86 0.47 3.19 16 20 N -0.92 -55.65 13.97 21.65 0.30 -55.35 16 21 Si 0.91 45.10 27.74 68.60 1.90 47.01 16 22 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 25 C 0.13 2.99 5.26 86.33 0.45 3.44 16 26 C 0.05 1.03 1.93 45.02 0.09 1.11 16 27 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.80 6.28 -2.39 -0.02 0.78 16 33 H 0.02 0.40 8.08 -2.39 -0.02 0.38 16 34 H 0.07 1.45 7.01 -2.39 -0.02 1.43 16 35 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.12 1.13 6.07 -2.39 -0.01 1.12 16 37 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.85 5.92 -2.39 -0.01 1.84 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.11 3.92 7.68 -2.40 -0.02 3.91 16 44 H 0.12 4.01 7.95 -2.39 -0.02 3.99 16 45 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.07 2.12 5.83 -2.39 -0.01 2.11 16 Total: -1.00 -73.21 372.88 -0.39 -73.60 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.91 Total: 13.09 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 5.68 Total: -2.86 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -6.23 Total: -86.95 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.61 Total: -33.77 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.01 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -73.21 -0.39 -73.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176929853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.087 kcal (2) G-P(sol) polarization free energy of solvation -73.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds