Wall clock time and date at job start Tue Mar 31 2020 16:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46960 * 2 1 4 4 N 1.46906 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.47028 * 110.99851 * 66.68499 * 4 3 2 6 6 C 1.53060 * 109.44043 * 182.34607 * 5 4 3 7 7 O 1.43089 * 109.36801 * 303.58528 * 6 5 4 8 8 C 1.42888 * 113.53957 * 58.27059 * 7 6 5 9 9 H 1.09002 * 109.30928 * 60.36212 * 8 7 6 10 10 C 1.52766 * 110.02982 * 179.83430 * 8 7 6 11 11 C 1.53163 * 109.57669 * 59.81090 * 10 8 7 12 12 N 1.47161 * 108.67225 * 54.55683 * 11 10 8 13 13 C 1.34771 * 120.81477 * 125.88191 * 12 11 10 14 14 O 1.21289 * 119.99958 * 180.10033 * 13 12 11 15 15 C 1.50701 * 120.00258 * 0.09830 * 13 12 11 16 16 S 1.80996 * 109.47301 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00283 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99842 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00445 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00224 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99792 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47199 * 89.99851 * 21 19 17 23 23 H 1.48504 * 109.46890 * 210.00153 * 21 19 17 24 24 H 1.48502 * 109.46976 * 329.99408 * 21 19 17 25 25 C 1.46858 * 118.50074 * 305.98218 * 12 11 10 26 26 C 1.47260 * 111.00088 * 189.99927 * 4 3 2 27 27 H 1.08994 * 109.73268 * 56.12588 * 26 4 3 28 28 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47238 * 299.99797 * 1 2 3 30 30 H 1.08994 * 109.47185 * 60.00157 * 1 2 3 31 31 H 1.08993 * 109.47187 * 239.99612 * 2 1 3 32 32 H 1.09004 * 109.47376 * 119.99310 * 2 1 3 33 33 H 1.09003 * 109.47468 * 59.99840 * 3 2 1 34 34 H 1.09002 * 109.47410 * 299.99911 * 3 2 1 35 35 H 1.08996 * 109.48223 * 302.34485 * 5 4 3 36 36 H 1.09000 * 109.47160 * 62.35251 * 5 4 3 37 37 H 1.09007 * 109.48600 * 63.55228 * 6 5 4 38 38 H 1.09003 * 109.49156 * 183.59468 * 6 5 4 39 39 H 1.09002 * 109.45287 * 179.85129 * 10 8 7 40 40 H 1.09002 * 109.45208 * 299.80245 * 10 8 7 41 41 H 1.08996 * 109.61572 * 174.28524 * 11 10 8 42 42 H 1.09003 * 109.61801 * 294.81184 * 11 10 8 43 43 H 1.08988 * 109.47666 * 300.00323 * 15 13 12 44 44 H 1.09007 * 109.46830 * 60.00587 * 15 13 12 45 45 H 0.96994 * 120.00282 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.55578 * 294.05357 * 25 12 11 47 47 H 1.08997 * 109.55338 * 173.84725 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0354 0.8995 -1.2615 6 6 5.5643 0.8617 -1.2009 7 8 6.0608 2.1743 -0.9221 8 6 5.5649 2.7244 0.2999 9 1 5.8623 2.0840 1.1303 10 6 6.1467 4.1197 0.5198 11 6 5.7476 5.0315 -0.6443 12 7 4.2829 5.0032 -0.7842 13 6 3.5669 6.1449 -0.7808 14 8 2.3601 6.1043 -0.8953 15 6 4.2656 7.4722 -0.6348 16 16 3.0417 8.8052 -0.6676 17 6 4.1030 10.1997 -0.4844 18 1 5.1699 10.0582 -0.3943 19 6 3.5679 11.4801 -0.4559 20 7 4.3608 12.5218 -0.3185 21 14 1.7225 11.7249 -0.6110 22 1 1.1053 11.7052 0.7394 23 1 1.4495 13.0319 -1.2611 24 1 1.1458 10.6323 -1.4350 25 6 3.6175 3.7017 -0.9255 26 6 4.0368 2.7965 0.2381 27 1 3.6352 3.1886 1.1724 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.6524 -0.1100 -1.4104 36 1 3.7200 1.5337 -2.0900 37 1 5.8802 0.1783 -0.4126 38 1 5.9578 0.5194 -2.1581 39 1 5.7605 4.5312 1.4524 40 1 7.2335 4.0554 0.5740 41 1 6.0753 6.0507 -0.4398 42 1 6.2096 4.6737 -1.5645 43 1 4.8047 7.4968 0.3121 44 1 4.9689 7.6050 -1.4569 45 1 3.9869 13.4166 -0.2982 46 1 3.9113 3.2423 -1.8694 47 1 2.5366 3.8408 -0.9084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176929854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:18 Heat of formation + Delta-G solvation = -71.465976 kcal Electronic energy + Delta-G solvation = -26976.471687 eV Core-core repulsion = 23285.556348 eV Total energy + Delta-G solvation = -3690.915339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10117 -39.07724 -36.97187 -36.06715 -33.54604 -32.44989 -32.34111 -30.77703 -29.50708 -28.24021 -25.70687 -25.30827 -25.05414 -23.95999 -22.59418 -21.02429 -20.07005 -18.88173 -17.72830 -16.98933 -16.88417 -16.35329 -16.10659 -15.88106 -15.33797 -15.22202 -14.98606 -14.80637 -14.41454 -14.02802 -13.77430 -13.66283 -13.49642 -13.16579 -12.96811 -12.81144 -12.78993 -12.45605 -12.25449 -12.00202 -11.93088 -11.72145 -11.43194 -11.31831 -11.25340 -11.01373 -11.00367 -10.93143 -10.63051 -10.52826 -9.87694 -9.84652 -9.49407 -9.07573 -9.00283 -8.49268 -8.28772 -6.92414 -6.29161 -4.00911 2.68434 2.91571 3.13533 3.32634 3.41000 3.46059 3.50298 3.60553 4.31892 4.33339 4.44015 4.58431 4.62058 4.65228 4.68843 4.77842 4.81336 4.88634 4.98692 4.99951 5.04295 5.09719 5.10024 5.23355 5.24389 5.32089 5.39407 5.43799 5.47156 5.53395 5.61605 5.64291 5.71190 5.71827 5.76027 5.76603 5.85157 5.93522 5.96718 6.00138 6.39653 6.61199 6.68339 6.88517 7.46524 7.93940 8.41263 8.42557 9.17100 10.80079 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.003007 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.609132 B = 9308.242626 C =10557.039146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.049 3.951 4 N -0.526 5.526 5 C 0.006 3.994 6 C 0.066 3.934 7 O -0.375 6.375 8 C 0.102 3.898 9 H 0.068 0.932 10 C -0.127 4.127 11 C 0.110 3.890 12 N -0.614 5.614 13 C 0.534 3.466 14 O -0.522 6.522 15 C -0.120 4.120 16 S -0.144 6.144 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.236 1.236 25 C 0.089 3.911 26 C 0.041 3.959 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.069 0.931 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 -27.702 0.515 27.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.079 4.079 4 N -0.250 5.250 5 C -0.122 4.122 6 C -0.011 4.011 7 O -0.294 6.294 8 C 0.044 3.956 9 H 0.086 0.914 10 C -0.166 4.166 11 C -0.013 4.013 12 N -0.350 5.350 13 C 0.322 3.678 14 O -0.397 6.397 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.160 1.160 25 C -0.036 4.036 26 C -0.069 4.069 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.428 -27.762 0.619 27.772 hybrid contribution 0.284 0.750 -0.383 0.889 sum 0.712 -27.012 0.236 27.023 Atomic orbital electron populations 1.21743 0.95430 1.01755 1.02140 1.21516 0.95595 0.96075 1.02439 1.22260 0.86426 0.97516 1.01695 1.62654 1.08338 1.20475 1.33524 1.22927 0.96605 1.01190 0.91435 1.22626 0.92029 0.84869 1.01607 1.87994 1.69307 1.31165 1.40919 1.21948 0.91056 0.95233 0.87376 0.91425 1.21919 1.02081 0.92979 0.99627 1.21744 0.79699 1.01071 0.98809 1.48024 1.07326 1.05333 1.74277 1.20329 0.87370 0.84877 0.75249 1.90681 1.14034 1.86614 1.48322 1.23300 1.03433 0.94827 1.05517 1.84793 1.12279 0.98280 1.96380 1.22305 0.95758 0.90838 1.57867 0.89368 1.24708 0.98613 0.94745 0.93227 1.69934 1.35443 0.98598 1.47722 0.86738 0.85294 0.79621 0.80221 1.19214 1.19943 1.15952 1.22112 0.99367 0.83543 0.98563 1.22822 0.96362 0.88022 0.99700 0.88332 0.92529 0.92490 0.92688 0.92115 0.91193 0.90342 0.94121 0.89379 0.93295 0.92354 0.88460 0.89600 0.89315 0.88935 0.90517 0.88481 0.88460 0.91938 0.91261 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.85 5.88 -26.73 -0.16 -1.01 16 3 C 0.05 0.43 4.36 -3.82 -0.02 0.42 16 4 N -0.53 -4.80 4.69 -225.98 -1.06 -5.86 16 5 C 0.01 0.05 5.01 -3.72 -0.02 0.03 16 6 C 0.07 0.50 7.01 37.19 0.26 0.76 16 7 O -0.38 -3.73 9.44 -35.23 -0.33 -4.07 16 8 C 0.10 0.97 2.87 -26.80 -0.08 0.90 16 9 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 10 C -0.13 -1.17 5.83 -26.77 -0.16 -1.33 16 11 C 0.11 1.23 6.14 -3.60 -0.02 1.21 16 12 N -0.61 -8.71 2.98 -172.60 -0.51 -9.23 16 13 C 0.53 9.87 7.72 -10.99 -0.08 9.79 16 14 O -0.52 -11.50 15.28 5.55 0.08 -11.41 16 15 C -0.12 -2.36 4.51 36.01 0.16 -2.20 16 16 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 17 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 18 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 21 Si 0.86 21.85 27.74 -169.99 -4.72 17.14 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.24 -6.02 6.74 56.52 0.38 -5.63 16 25 C 0.09 1.13 4.74 -3.71 -0.02 1.11 16 26 C 0.04 0.42 2.54 -67.32 -0.17 0.25 16 27 H 0.10 1.10 8.07 -51.93 -0.42 0.69 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 6.52 -51.93 -0.34 0.07 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.74 8.03 -51.93 -0.42 0.33 16 34 H 0.04 0.40 7.04 -51.93 -0.37 0.04 16 35 H 0.09 0.57 6.39 -51.93 -0.33 0.24 16 36 H 0.05 0.44 6.12 -51.93 -0.32 0.12 16 37 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.03 5.96 -51.93 -0.31 0.72 16 42 H 0.08 0.84 7.88 -51.93 -0.41 0.44 16 43 H 0.10 1.76 7.71 -51.92 -0.40 1.36 16 44 H 0.10 1.80 7.95 -51.91 -0.41 1.39 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.07 0.87 5.71 -51.93 -0.30 0.58 16 47 H 0.09 1.33 5.93 -51.93 -0.31 1.02 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -33.34 368.56 -9.62 -42.96 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.71 Total: -0.93 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 0.29 Total: -2.70 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.80 Total: -40.88 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.25 Total: -15.48 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.34 -9.62 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176929854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.504 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds