Wall clock time and date at job start Tue Mar 31 2020 16:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46960 * 2 1 4 4 N 1.46906 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.47028 * 110.99851 * 66.68499 * 4 3 2 6 6 C 1.53060 * 109.44043 * 182.34607 * 5 4 3 7 7 O 1.43089 * 109.36801 * 303.58528 * 6 5 4 8 8 C 1.42888 * 113.53957 * 58.27059 * 7 6 5 9 9 H 1.09002 * 109.30928 * 60.36212 * 8 7 6 10 10 C 1.52766 * 110.02982 * 179.83430 * 8 7 6 11 11 C 1.53163 * 109.57669 * 59.81090 * 10 8 7 12 12 N 1.47161 * 108.67225 * 54.55683 * 11 10 8 13 13 C 1.34771 * 120.81477 * 125.88191 * 12 11 10 14 14 O 1.21289 * 119.99958 * 180.10033 * 13 12 11 15 15 C 1.50701 * 120.00258 * 0.09830 * 13 12 11 16 16 S 1.80996 * 109.47301 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00283 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99842 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00445 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00224 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99792 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47199 * 89.99851 * 21 19 17 23 23 H 1.48504 * 109.46890 * 210.00153 * 21 19 17 24 24 H 1.48502 * 109.46976 * 329.99408 * 21 19 17 25 25 C 1.46858 * 118.50074 * 305.98218 * 12 11 10 26 26 C 1.47260 * 111.00088 * 189.99927 * 4 3 2 27 27 H 1.08994 * 109.73268 * 56.12588 * 26 4 3 28 28 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47238 * 299.99797 * 1 2 3 30 30 H 1.08994 * 109.47185 * 60.00157 * 1 2 3 31 31 H 1.08993 * 109.47187 * 239.99612 * 2 1 3 32 32 H 1.09004 * 109.47376 * 119.99310 * 2 1 3 33 33 H 1.09003 * 109.47468 * 59.99840 * 3 2 1 34 34 H 1.09002 * 109.47410 * 299.99911 * 3 2 1 35 35 H 1.08996 * 109.48223 * 302.34485 * 5 4 3 36 36 H 1.09000 * 109.47160 * 62.35251 * 5 4 3 37 37 H 1.09007 * 109.48600 * 63.55228 * 6 5 4 38 38 H 1.09003 * 109.49156 * 183.59468 * 6 5 4 39 39 H 1.09002 * 109.45287 * 179.85129 * 10 8 7 40 40 H 1.09002 * 109.45208 * 299.80245 * 10 8 7 41 41 H 1.08996 * 109.61572 * 174.28524 * 11 10 8 42 42 H 1.09003 * 109.61801 * 294.81184 * 11 10 8 43 43 H 1.08988 * 109.47666 * 300.00323 * 15 13 12 44 44 H 1.09007 * 109.46830 * 60.00587 * 15 13 12 45 45 H 0.96994 * 120.00282 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.55578 * 294.05357 * 25 12 11 47 47 H 1.08997 * 109.55338 * 173.84725 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0354 0.8995 -1.2615 6 6 5.5643 0.8617 -1.2009 7 8 6.0608 2.1743 -0.9221 8 6 5.5649 2.7244 0.2999 9 1 5.8623 2.0840 1.1303 10 6 6.1467 4.1197 0.5198 11 6 5.7476 5.0315 -0.6443 12 7 4.2829 5.0032 -0.7842 13 6 3.5669 6.1449 -0.7808 14 8 2.3601 6.1043 -0.8953 15 6 4.2656 7.4722 -0.6348 16 16 3.0417 8.8052 -0.6676 17 6 4.1030 10.1997 -0.4844 18 1 5.1699 10.0582 -0.3943 19 6 3.5679 11.4801 -0.4559 20 7 4.3608 12.5218 -0.3185 21 14 1.7225 11.7249 -0.6110 22 1 1.1053 11.7052 0.7394 23 1 1.4495 13.0319 -1.2611 24 1 1.1458 10.6323 -1.4350 25 6 3.6175 3.7017 -0.9255 26 6 4.0368 2.7965 0.2381 27 1 3.6352 3.1886 1.1724 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.6524 -0.1100 -1.4104 36 1 3.7200 1.5337 -2.0900 37 1 5.8802 0.1783 -0.4126 38 1 5.9578 0.5194 -2.1581 39 1 5.7605 4.5312 1.4524 40 1 7.2335 4.0554 0.5740 41 1 6.0753 6.0507 -0.4398 42 1 6.2096 4.6737 -1.5645 43 1 4.8047 7.4968 0.3121 44 1 4.9689 7.6050 -1.4569 45 1 3.9869 13.4166 -0.2982 46 1 3.9113 3.2423 -1.8694 47 1 2.5366 3.8408 -0.9084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176929854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:17 Heat of formation + Delta-G solvation = -94.495020 kcal Electronic energy + Delta-G solvation = -26977.470302 eV Core-core repulsion = 23285.556348 eV Total energy + Delta-G solvation = -3691.913953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01321 -40.33361 -37.72716 -37.14779 -34.68172 -34.22934 -33.32706 -31.82609 -30.64038 -29.09947 -27.87747 -26.38522 -25.85601 -24.70284 -23.37755 -21.75608 -21.23306 -19.98700 -19.53020 -18.36886 -17.68069 -17.22133 -17.09739 -17.05616 -16.95239 -16.20365 -16.16176 -16.00907 -15.49531 -15.20394 -14.97982 -14.81770 -14.69824 -14.32398 -14.09067 -13.87737 -13.64549 -13.57748 -13.36204 -13.14715 -13.03133 -12.90702 -12.69117 -12.61876 -12.44482 -12.17968 -12.04426 -11.88272 -11.75640 -11.60020 -11.28877 -11.18145 -11.01316 -10.56695 -10.53235 -10.09672 -9.24965 -9.01635 -8.52343 -6.23566 0.94579 1.30040 1.43789 1.44915 1.51604 1.96806 2.23898 2.64032 2.68903 2.77473 2.85864 3.41139 3.61342 3.72402 3.81477 3.91991 3.95641 4.01320 4.05384 4.14202 4.17830 4.26584 4.32815 4.39050 4.41010 4.42892 4.47569 4.59497 4.66698 4.71861 4.74357 4.79732 4.83307 4.90116 4.96054 4.99518 5.14950 5.17538 5.24980 5.31779 5.39998 5.70284 5.85269 5.89508 6.10890 6.18151 6.20639 6.92858 7.00478 8.60018 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.003007 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.609132 B = 9308.242626 C =10557.039146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C 0.049 3.951 4 N -0.522 5.522 5 C 0.006 3.994 6 C 0.063 3.937 7 O -0.388 6.388 8 C 0.105 3.895 9 H 0.080 0.920 10 C -0.123 4.123 11 C 0.103 3.897 12 N -0.601 5.601 13 C 0.534 3.466 14 O -0.565 6.565 15 C -0.104 4.104 16 S -0.178 6.178 17 C -0.526 4.526 18 H 0.064 0.936 19 C 0.047 3.953 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.239 1.239 25 C 0.093 3.907 26 C 0.046 3.954 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.106 0.894 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.277 0.723 46 H 0.073 0.927 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 -29.987 0.621 30.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.079 4.079 4 N -0.246 5.246 5 C -0.121 4.121 6 C -0.013 4.013 7 O -0.307 6.307 8 C 0.047 3.953 9 H 0.098 0.902 10 C -0.161 4.161 11 C -0.018 4.018 12 N -0.335 5.335 13 C 0.322 3.678 14 O -0.444 6.444 15 C -0.255 4.255 16 S 0.049 5.951 17 C -0.674 4.674 18 H 0.082 0.918 19 C -0.159 4.159 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.186 1.186 23 H -0.183 1.183 24 H -0.163 1.163 25 C -0.031 4.031 26 C -0.064 4.064 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.124 0.876 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.133 0.867 44 H 0.129 0.871 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.089 -30.085 0.726 30.114 hybrid contribution 0.208 1.300 -0.439 1.388 sum 1.297 -28.785 0.287 28.816 Atomic orbital electron populations 1.21743 0.95222 1.02405 1.01661 1.21458 0.95712 0.94690 1.02954 1.22264 0.86484 0.98596 1.00520 1.62730 1.08300 1.19279 1.34276 1.23009 0.97152 1.01761 0.90207 1.22804 0.91465 0.84095 1.02944 1.87979 1.69470 1.32298 1.40949 1.21941 0.89837 0.95647 0.87856 0.90226 1.21930 1.03456 0.92189 0.98539 1.22011 0.77443 1.02037 1.00356 1.48037 1.08618 1.04646 1.72179 1.20086 0.86831 0.85470 0.75419 1.90667 1.15708 1.87179 1.50850 1.23261 1.01854 0.93262 1.07112 1.84740 1.14441 0.99416 1.96516 1.22427 0.95195 0.92386 1.57377 0.91758 1.25532 1.02750 0.94602 0.92990 1.70006 1.37351 0.99260 1.48760 0.85889 0.80247 0.79946 0.80428 1.18649 1.18280 1.16286 1.22169 0.97910 0.83012 1.00031 1.22759 0.97485 0.88136 0.97992 0.89263 0.91287 0.92922 0.93266 0.91212 0.90899 0.91380 0.95557 0.87556 0.94559 0.91378 0.86682 0.89325 0.87081 0.88681 0.89695 0.86675 0.87067 0.91336 0.90858 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.11 -1.43 5.88 30.59 0.18 -1.25 16 3 C 0.05 0.85 4.36 86.30 0.38 1.23 16 4 N -0.52 -8.77 4.69 -868.88 -4.07 -12.85 16 5 C 0.01 0.09 5.01 86.30 0.43 0.52 16 6 C 0.06 0.79 7.01 72.00 0.50 1.29 16 7 O -0.39 -6.63 9.44 -148.98 -1.41 -8.04 16 8 C 0.11 1.74 2.87 30.55 0.09 1.83 16 9 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 10 C -0.12 -1.93 5.83 30.57 0.18 -1.75 16 11 C 0.10 2.11 6.14 86.31 0.53 2.64 16 12 N -0.60 -16.53 2.98 -818.38 -2.44 -18.97 16 13 C 0.53 19.64 7.72 87.66 0.68 20.31 16 14 O -0.57 -25.32 15.28 -3.06 -0.05 -25.36 16 15 C -0.10 -4.04 4.51 71.24 0.32 -3.72 16 16 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16 17 C -0.53 -30.67 10.04 67.95 0.68 -29.99 16 18 H 0.06 3.93 8.03 -2.91 -0.02 3.91 16 19 C 0.05 2.75 5.50 84.86 0.47 3.22 16 20 N -0.92 -55.76 13.97 21.65 0.30 -55.46 16 21 Si 0.91 45.25 27.74 68.60 1.90 47.15 16 22 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 25 C 0.09 2.33 4.74 86.40 0.41 2.74 16 26 C 0.05 0.91 2.54 44.97 0.11 1.02 16 27 H 0.09 1.94 8.07 -2.39 -0.02 1.92 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.78 6.52 -2.39 -0.02 0.77 16 32 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.07 1.31 8.03 -2.39 -0.02 1.29 16 34 H 0.03 0.53 7.04 -2.39 -0.02 0.51 16 35 H 0.11 1.09 6.39 -2.39 -0.02 1.08 16 36 H 0.04 0.61 6.12 -2.39 -0.01 0.59 16 37 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.09 1.91 5.96 -2.39 -0.01 1.90 16 42 H 0.08 1.66 7.88 -2.39 -0.02 1.65 16 43 H 0.12 4.05 7.71 -2.40 -0.02 4.03 16 44 H 0.11 4.01 7.95 -2.39 -0.02 3.99 16 45 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 46 H 0.07 1.80 5.71 -2.39 -0.01 1.78 16 47 H 0.07 2.01 5.93 -2.39 -0.01 2.00 16 Total: -1.00 -72.32 368.56 -0.21 -72.53 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.92 Total: 14.27 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.67 Total: -3.12 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -6.21 Total: -87.27 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.45 Total: -33.40 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Total: -72.32 -0.21 -72.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176929854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.962 kcal (2) G-P(sol) polarization free energy of solvation -72.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds