Wall clock time and date at job start Tue Mar 31 2020 16:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 N 1.46902 * 109.46626 * 179.97438 * 3 2 1 5 5 C 1.47030 * 111.00185 * 293.30643 * 4 3 2 6 6 C 1.53066 * 109.43204 * 177.64644 * 5 4 3 7 7 O 1.43080 * 109.36382 * 56.43220 * 6 5 4 8 8 C 1.42887 * 113.54777 * 301.72548 * 7 6 5 9 9 H 1.09007 * 108.83517 * 299.91191 * 8 7 6 10 10 C 1.52762 * 110.02744 * 180.15980 * 8 7 6 11 11 C 1.53173 * 109.57336 * 300.18418 * 10 8 7 12 12 N 1.46959 * 108.60897 * 305.44156 * 11 10 8 13 13 C 1.34775 * 120.68780 * 234.07420 * 12 11 10 14 14 O 1.21276 * 120.00168 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99621 * 0.02562 * 13 12 11 16 16 S 1.81004 * 109.47058 * 179.97438 * 15 13 12 17 17 C 1.76201 * 99.99988 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99966 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99648 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00135 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99724 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47144 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47261 * 120.00269 * 21 19 17 24 24 H 1.48505 * 109.47149 * 240.00051 * 21 19 17 25 25 C 1.46860 * 118.62697 * 54.09849 * 12 11 10 26 26 C 1.47266 * 110.99793 * 169.99972 * 4 3 2 27 27 H 1.08997 * 109.72832 * 303.88209 * 26 4 3 28 28 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 29 29 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 31 31 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 32 32 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 33 33 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 34 34 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 35 35 H 1.08993 * 109.47734 * 297.63315 * 5 4 3 36 36 H 1.09000 * 109.47327 * 57.65694 * 5 4 3 37 37 H 1.09004 * 109.49308 * 296.46041 * 6 5 4 38 38 H 1.09001 * 109.50284 * 176.41052 * 6 5 4 39 39 H 1.09000 * 109.45558 * 180.15158 * 10 8 7 40 40 H 1.09003 * 109.45132 * 60.21411 * 10 8 7 41 41 H 1.08997 * 109.61290 * 185.70260 * 11 10 8 42 42 H 1.09001 * 109.61450 * 65.17739 * 11 10 8 43 43 H 1.08996 * 109.47192 * 300.00168 * 15 13 12 44 44 H 1.09008 * 109.47183 * 60.00197 * 15 13 12 45 45 H 0.97004 * 119.99777 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.55304 * 186.14690 * 25 12 11 47 47 H 1.08996 * 109.64144 * 65.89070 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0353 0.8997 1.2615 6 6 5.5643 0.8617 1.2006 7 8 6.0608 2.1743 0.9218 8 6 5.5647 2.7247 -0.2999 9 1 5.8620 2.0763 -1.1243 10 6 6.1466 4.1200 -0.5195 11 6 5.7474 5.0315 0.6449 12 7 4.2846 5.0021 0.7833 13 6 3.5704 6.1451 0.7803 14 8 2.3638 6.1064 0.8958 15 6 4.2712 7.4711 0.6333 16 16 3.0493 8.8061 0.6654 17 6 4.1127 10.1987 0.4797 18 1 5.1793 10.0554 0.3890 19 6 3.5796 11.4798 0.4500 20 7 2.2796 11.6545 0.5610 21 14 4.7070 12.9563 0.2538 22 1 6.1145 12.4941 0.1510 23 1 4.3394 13.6997 -0.9780 24 1 4.5634 13.8488 1.4320 25 6 3.6173 3.7017 0.9255 26 6 4.0367 2.7965 -0.2381 27 1 3.6349 3.1886 -1.1724 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6765 1.9563 -0.8899 34 1 1.6765 1.9564 0.8900 35 1 3.7203 1.5341 2.0900 36 1 3.6522 -0.1098 1.4105 37 1 5.8800 0.1784 0.4122 38 1 5.9582 0.5195 2.1577 39 1 5.7603 4.5318 -1.4519 40 1 7.2333 4.0556 -0.5741 41 1 6.0753 6.0507 0.4407 42 1 6.2092 4.6732 1.5650 43 1 4.9755 7.6028 1.4547 44 1 4.8096 7.4945 -0.3142 45 1 1.9070 12.5499 0.5398 46 1 2.5365 3.8423 0.9071 47 1 3.9092 3.2413 1.8694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176929855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:25 Heat of formation + Delta-G solvation = -71.645101 kcal Electronic energy + Delta-G solvation = -26924.776935 eV Core-core repulsion = 23233.853828 eV Total energy + Delta-G solvation = -3690.923106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.05219 -38.97971 -36.92986 -35.99626 -33.50270 -32.43275 -32.27546 -30.70857 -29.40674 -28.17105 -25.63099 -25.18829 -24.99318 -23.91216 -22.54753 -20.98089 -19.98115 -18.81978 -17.71845 -16.91624 -16.81113 -16.30711 -16.04923 -15.82320 -15.27727 -15.16056 -14.80909 -14.75998 -14.35669 -14.03693 -13.81937 -13.55948 -13.45855 -13.10946 -12.87400 -12.77344 -12.57913 -12.36833 -12.19686 -11.95775 -11.81543 -11.67638 -11.36703 -11.27331 -11.07203 -11.01808 -10.95981 -10.88604 -10.75373 -10.52285 -9.81888 -9.79504 -9.37915 -9.07673 -9.00169 -8.22716 -8.21112 -6.50248 -6.21812 -3.92322 2.89708 3.04298 3.21524 3.24876 3.30645 3.41899 3.49281 3.64140 4.20002 4.37400 4.49559 4.62445 4.68187 4.71327 4.81500 4.85342 4.87916 4.95798 5.04033 5.07845 5.11574 5.13481 5.22965 5.27969 5.34879 5.43483 5.47629 5.49797 5.56245 5.58213 5.66093 5.69200 5.75975 5.78410 5.82638 5.87858 5.89899 5.98070 6.02099 6.12100 6.47086 6.65731 6.74750 6.91937 7.56810 7.60127 8.35398 8.55625 9.23650 10.85662 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.002824 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.296697 B = 9912.912736 C =11039.952463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.048 3.952 4 N -0.526 5.526 5 C 0.006 3.994 6 C 0.066 3.934 7 O -0.376 6.376 8 C 0.103 3.897 9 H 0.067 0.933 10 C -0.127 4.127 11 C 0.111 3.889 12 N -0.615 5.615 13 C 0.535 3.465 14 O -0.519 6.519 15 C -0.149 4.149 16 S -0.062 6.062 17 C -0.533 4.533 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.089 3.911 26 C 0.040 3.960 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.091 0.909 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.464 -25.222 -1.159 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.079 4.079 4 N -0.250 5.250 5 C -0.122 4.122 6 C -0.011 4.011 7 O -0.295 6.295 8 C 0.044 3.956 9 H 0.085 0.915 10 C -0.166 4.166 11 C -0.012 4.012 12 N -0.352 5.352 13 C 0.323 3.677 14 O -0.394 6.394 15 C -0.300 4.300 16 S 0.164 5.836 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.036 4.036 26 C -0.069 4.069 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.109 0.891 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.799 -25.355 -1.243 25.835 hybrid contribution 1.615 1.292 0.260 2.085 sum 6.415 -24.063 -0.983 24.923 Atomic orbital electron populations 1.21745 0.95425 1.01727 1.02177 1.21517 0.95602 0.96089 1.02396 1.22262 0.86416 0.97493 1.01752 1.62659 1.08352 1.20521 1.33471 1.22926 0.96569 1.01176 0.91493 1.22621 0.92071 0.84863 1.01554 1.87987 1.69271 1.31155 1.41073 1.21960 0.91126 0.95179 0.87293 0.91501 1.21911 1.01940 0.93006 0.99708 1.21673 0.79980 1.00944 0.98618 1.48008 1.07206 1.05386 1.74553 1.20367 0.87394 0.84804 0.75132 1.90680 1.14069 1.86573 1.48044 1.23548 1.05021 0.96774 1.04649 1.85408 1.08236 0.94286 1.95643 1.22895 0.95030 0.92295 1.57947 0.90876 1.24997 0.95506 0.98520 0.94609 1.70033 1.10665 1.22819 1.46778 0.86115 0.80157 0.81257 0.77953 1.19596 1.20575 1.20573 1.22095 0.99395 0.83643 0.98422 1.22827 0.96305 0.88030 0.99778 0.88332 0.92474 0.92557 0.92662 0.91224 0.92140 0.90316 0.94076 0.93275 0.89404 0.92396 0.88501 0.89640 0.89457 0.89014 0.90709 0.89223 0.89199 0.92252 0.89113 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.89 5.88 -26.73 -0.16 -1.05 16 3 C 0.05 0.45 4.36 -3.82 -0.02 0.43 16 4 N -0.53 -5.02 4.69 -225.98 -1.06 -6.08 16 5 C 0.01 0.05 5.01 -3.72 -0.02 0.03 16 6 C 0.07 0.53 7.01 37.19 0.26 0.79 16 7 O -0.38 -3.88 9.44 -35.23 -0.33 -4.21 16 8 C 0.10 1.02 2.87 -26.80 -0.08 0.94 16 9 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 10 C -0.13 -1.21 5.83 -26.76 -0.16 -1.37 16 11 C 0.11 1.30 6.14 -3.70 -0.02 1.28 16 12 N -0.62 -9.17 2.97 -172.76 -0.51 -9.69 16 13 C 0.53 10.42 7.72 -10.99 -0.08 10.33 16 14 O -0.52 -12.08 15.28 5.56 0.08 -11.99 16 15 C -0.15 -3.07 4.50 36.01 0.16 -2.90 16 16 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 17 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 21 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.09 1.19 4.75 -3.70 -0.02 1.17 16 26 C 0.04 0.44 2.54 -67.32 -0.17 0.27 16 27 H 0.10 1.16 8.07 -51.93 -0.42 0.74 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.43 6.52 -51.93 -0.34 0.09 16 33 H 0.08 0.78 8.03 -51.93 -0.42 0.37 16 34 H 0.04 0.43 7.04 -51.93 -0.37 0.06 16 35 H 0.05 0.47 6.11 -51.93 -0.32 0.15 16 36 H 0.09 0.60 6.39 -51.93 -0.33 0.27 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 1.06 5.94 -51.93 -0.31 0.75 16 42 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 43 H 0.09 1.72 7.94 -51.92 -0.41 1.31 16 44 H 0.09 1.69 7.70 -51.91 -0.40 1.29 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.09 1.40 5.93 -51.93 -0.31 1.09 16 47 H 0.07 0.90 5.71 -51.93 -0.30 0.60 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -33.75 371.19 -10.13 -43.88 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.67 Total: -0.79 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 0.27 Total: -3.72 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -0.84 Total: -41.24 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.25 Total: -16.20 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.75 -10.13 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176929855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.764 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds