Wall clock time and date at job start Tue Mar 31 2020 16:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 N 1.46902 * 109.46626 * 179.97438 * 3 2 1 5 5 C 1.47030 * 111.00185 * 293.30643 * 4 3 2 6 6 C 1.53066 * 109.43204 * 177.64644 * 5 4 3 7 7 O 1.43080 * 109.36382 * 56.43220 * 6 5 4 8 8 C 1.42887 * 113.54777 * 301.72548 * 7 6 5 9 9 H 1.09007 * 108.83517 * 299.91191 * 8 7 6 10 10 C 1.52762 * 110.02744 * 180.15980 * 8 7 6 11 11 C 1.53173 * 109.57336 * 300.18418 * 10 8 7 12 12 N 1.46959 * 108.60897 * 305.44156 * 11 10 8 13 13 C 1.34775 * 120.68780 * 234.07420 * 12 11 10 14 14 O 1.21276 * 120.00168 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99621 * 0.02562 * 13 12 11 16 16 S 1.81004 * 109.47058 * 179.97438 * 15 13 12 17 17 C 1.76201 * 99.99988 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99966 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99648 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00135 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99724 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47144 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47261 * 120.00269 * 21 19 17 24 24 H 1.48505 * 109.47149 * 240.00051 * 21 19 17 25 25 C 1.46860 * 118.62697 * 54.09849 * 12 11 10 26 26 C 1.47266 * 110.99793 * 169.99972 * 4 3 2 27 27 H 1.08997 * 109.72832 * 303.88209 * 26 4 3 28 28 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 29 29 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 31 31 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 32 32 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 33 33 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 34 34 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 35 35 H 1.08993 * 109.47734 * 297.63315 * 5 4 3 36 36 H 1.09000 * 109.47327 * 57.65694 * 5 4 3 37 37 H 1.09004 * 109.49308 * 296.46041 * 6 5 4 38 38 H 1.09001 * 109.50284 * 176.41052 * 6 5 4 39 39 H 1.09000 * 109.45558 * 180.15158 * 10 8 7 40 40 H 1.09003 * 109.45132 * 60.21411 * 10 8 7 41 41 H 1.08997 * 109.61290 * 185.70260 * 11 10 8 42 42 H 1.09001 * 109.61450 * 65.17739 * 11 10 8 43 43 H 1.08996 * 109.47192 * 300.00168 * 15 13 12 44 44 H 1.09008 * 109.47183 * 60.00197 * 15 13 12 45 45 H 0.97004 * 119.99777 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.55304 * 186.14690 * 25 12 11 47 47 H 1.08996 * 109.64144 * 65.89070 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0353 0.8997 1.2615 6 6 5.5643 0.8617 1.2006 7 8 6.0608 2.1743 0.9218 8 6 5.5647 2.7247 -0.2999 9 1 5.8620 2.0763 -1.1243 10 6 6.1466 4.1200 -0.5195 11 6 5.7474 5.0315 0.6449 12 7 4.2846 5.0021 0.7833 13 6 3.5704 6.1451 0.7803 14 8 2.3638 6.1064 0.8958 15 6 4.2712 7.4711 0.6333 16 16 3.0493 8.8061 0.6654 17 6 4.1127 10.1987 0.4797 18 1 5.1793 10.0554 0.3890 19 6 3.5796 11.4798 0.4500 20 7 2.2796 11.6545 0.5610 21 14 4.7070 12.9563 0.2538 22 1 6.1145 12.4941 0.1510 23 1 4.3394 13.6997 -0.9780 24 1 4.5634 13.8488 1.4320 25 6 3.6173 3.7017 0.9255 26 6 4.0367 2.7965 -0.2381 27 1 3.6349 3.1886 -1.1724 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6765 1.9563 -0.8899 34 1 1.6765 1.9564 0.8900 35 1 3.7203 1.5341 2.0900 36 1 3.6522 -0.1098 1.4105 37 1 5.8800 0.1784 0.4122 38 1 5.9582 0.5195 2.1577 39 1 5.7603 4.5318 -1.4519 40 1 7.2333 4.0556 -0.5741 41 1 6.0753 6.0507 0.4407 42 1 6.2092 4.6732 1.5650 43 1 4.9755 7.6028 1.4547 44 1 4.8096 7.4945 -0.3142 45 1 1.9070 12.5499 0.5398 46 1 2.5365 3.8423 0.9071 47 1 3.9092 3.2413 1.8694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176929855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:23 Heat of formation + Delta-G solvation = -95.024766 kcal Electronic energy + Delta-G solvation = -26925.790753 eV Core-core repulsion = 23233.853828 eV Total energy + Delta-G solvation = -3691.936925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00519 -40.30322 -37.72490 -37.13657 -34.59063 -34.22856 -33.30430 -31.79108 -30.59995 -29.09157 -27.70382 -26.34387 -25.84636 -24.69852 -23.37138 -21.75179 -21.18568 -19.96232 -19.51282 -18.31573 -17.67490 -17.13496 -17.04249 -17.00198 -16.88201 -16.18483 -16.17195 -16.02320 -15.56268 -15.18639 -14.85490 -14.70964 -14.50863 -14.27785 -14.05625 -13.86724 -13.62334 -13.52205 -13.17572 -13.13156 -12.92576 -12.89850 -12.62710 -12.60264 -12.44929 -12.18897 -12.04064 -11.75483 -11.71335 -11.59764 -11.28154 -11.16339 -10.96349 -10.56013 -10.27192 -10.07930 -9.23895 -8.68737 -8.35216 -6.13875 1.23250 1.41567 1.44571 1.50328 1.56908 2.00669 2.26417 2.66758 2.77640 2.99170 3.22430 3.49784 3.64877 3.77660 3.82609 3.92523 3.95969 4.02155 4.05438 4.15346 4.23780 4.27091 4.34970 4.39137 4.43094 4.44366 4.48460 4.59573 4.67031 4.72222 4.74301 4.80151 4.83469 4.90416 4.96492 4.99620 5.14590 5.18125 5.24803 5.33374 5.41629 5.41951 5.85199 5.89334 6.19422 6.20312 6.23022 7.05981 7.06842 8.74334 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.002824 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.296697 B = 9912.912736 C =11039.952463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C 0.048 3.952 4 N -0.521 5.521 5 C 0.006 3.994 6 C 0.064 3.936 7 O -0.388 6.388 8 C 0.106 3.894 9 H 0.081 0.919 10 C -0.122 4.122 11 C 0.104 3.896 12 N -0.602 5.602 13 C 0.533 3.467 14 O -0.568 6.568 15 C -0.122 4.122 16 S -0.154 6.154 17 C -0.543 4.543 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.275 1.275 25 C 0.093 3.907 26 C 0.046 3.954 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.025 0.975 35 H 0.035 0.965 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.271 0.729 46 H 0.063 0.937 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.518 -26.657 -1.569 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.079 4.079 4 N -0.245 5.245 5 C -0.122 4.122 6 C -0.013 4.013 7 O -0.307 6.307 8 C 0.048 3.952 9 H 0.098 0.902 10 C -0.160 4.160 11 C -0.018 4.018 12 N -0.336 5.336 13 C 0.321 3.679 14 O -0.447 6.447 15 C -0.273 4.273 16 S 0.074 5.926 17 C -0.690 4.690 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.179 1.179 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.031 4.031 26 C -0.064 4.064 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.900 -26.845 -1.655 28.032 hybrid contribution 0.676 1.567 0.429 1.760 sum 8.575 -25.278 -1.226 26.721 Atomic orbital electron populations 1.21747 0.95253 1.02431 1.01625 1.21456 0.95688 0.94591 1.02999 1.22266 0.86573 0.98654 1.00435 1.62742 1.08223 1.19258 1.34255 1.23018 0.97247 1.01741 0.90174 1.22803 0.91370 0.84105 1.02978 1.87972 1.69384 1.32301 1.41083 1.21956 0.89698 0.95705 0.87838 0.90163 1.21922 1.03475 0.92104 0.98525 1.21969 0.77467 1.02077 1.00272 1.48018 1.08641 1.04581 1.72395 1.20217 0.86843 0.85638 0.75246 1.90664 1.16070 1.87236 1.50753 1.23358 1.02920 0.94539 1.06442 1.85618 1.13005 0.98029 1.95997 1.23214 0.95344 0.92581 1.57894 0.89783 1.26150 0.97187 1.02042 0.93861 1.70198 1.12991 1.23751 1.47927 0.84886 0.78327 0.76583 0.78026 1.17863 1.19919 1.20008 1.22147 0.97760 0.83190 1.00014 1.22765 0.97629 0.88123 0.97893 0.89415 0.92967 0.91182 0.93341 0.90808 0.91158 0.91485 0.95707 0.94674 0.87510 0.91296 0.86644 0.89413 0.86916 0.88558 0.89797 0.87466 0.87041 0.92013 0.91887 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.11 -1.54 5.88 30.60 0.18 -1.36 16 3 C 0.05 0.91 4.36 86.31 0.38 1.29 16 4 N -0.52 -9.37 4.69 -868.86 -4.07 -13.44 16 5 C 0.01 0.09 5.01 86.30 0.43 0.52 16 6 C 0.06 0.83 7.01 72.00 0.50 1.34 16 7 O -0.39 -6.88 9.44 -148.98 -1.41 -8.28 16 8 C 0.11 1.84 2.87 30.55 0.09 1.93 16 9 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 10 C -0.12 -1.98 5.83 30.57 0.18 -1.80 16 11 C 0.10 2.21 6.14 86.35 0.53 2.74 16 12 N -0.60 -17.70 2.97 -818.87 -2.43 -20.13 16 13 C 0.53 21.10 7.72 87.66 0.68 21.77 16 14 O -0.57 -27.77 15.28 -3.02 -0.05 -27.82 16 15 C -0.12 -4.97 4.50 71.24 0.32 -4.65 16 16 S -0.15 -8.67 20.57 -56.49 -1.16 -9.84 16 17 C -0.54 -31.05 9.50 67.95 0.65 -30.41 16 18 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.70 5.49 84.86 0.47 1.16 16 20 N -0.91 -56.35 13.22 21.65 0.29 -56.06 16 21 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C 0.09 2.51 4.75 86.40 0.41 2.92 16 26 C 0.05 0.97 2.54 44.97 0.11 1.08 16 27 H 0.09 2.05 8.07 -2.39 -0.02 2.03 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.86 6.52 -2.39 -0.02 0.84 16 33 H 0.07 1.40 8.03 -2.39 -0.02 1.38 16 34 H 0.02 0.54 7.04 -2.39 -0.02 0.53 16 35 H 0.04 0.63 6.11 -2.39 -0.01 0.62 16 36 H 0.11 1.19 6.39 -2.39 -0.02 1.17 16 37 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.10 1.98 5.94 -2.39 -0.01 1.96 16 42 H 0.08 1.70 7.87 -2.39 -0.02 1.68 16 43 H 0.11 4.00 7.94 -2.40 -0.02 3.98 16 44 H 0.11 4.06 7.70 -2.39 -0.02 4.04 16 45 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.06 2.07 5.93 -2.38 -0.01 2.05 16 47 H 0.07 1.91 5.71 -2.39 -0.01 1.89 16 Total: -1.00 -75.74 371.19 -0.21 -75.96 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.95 Total: 18.83 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.64 Total: -4.87 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -6.22 Total: -89.63 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.45 Total: -36.10 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.84 kcal Total: -75.74 -0.21 -75.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176929855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.069 kcal (2) G-P(sol) polarization free energy of solvation -75.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds