Wall clock time and date at job start Tue Mar 31 2020 16:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46807 * 2 1 4 4 N 1.46905 * 109.46944 * 180.02562 * 3 2 1 5 5 C 1.47071 * 111.00054 * 66.04271 * 4 3 2 6 6 C 1.53059 * 109.39453 * 182.10086 * 5 4 3 7 7 O 1.43081 * 109.41069 * 303.47835 * 6 5 4 8 8 C 1.42903 * 113.55947 * 58.50225 * 7 6 5 9 9 H 1.09002 * 109.47736 * 60.87388 * 8 7 6 10 10 C 1.52989 * 109.88624 * 181.14101 * 8 7 6 11 11 C 1.53240 * 109.14488 * 181.53986 * 10 8 7 12 12 N 1.46895 * 108.94847 * 305.63729 * 11 10 8 13 13 C 1.34778 * 120.56050 * 233.10890 * 12 11 10 14 14 O 1.21279 * 120.00040 * 180.02562 * 13 12 11 15 15 C 1.50699 * 119.99957 * 0.02562 * 13 12 11 16 16 S 1.80998 * 109.47233 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00140 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99823 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99931 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99502 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00264 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47342 * 89.99684 * 21 19 17 23 23 H 1.48495 * 109.47208 * 210.00237 * 21 19 17 24 24 H 1.48504 * 109.46916 * 329.99784 * 21 19 17 25 25 C 1.46993 * 118.88330 * 53.13048 * 12 11 10 26 26 C 1.46900 * 110.99985 * 189.47507 * 4 3 2 27 27 H 1.08995 * 109.53831 * 297.37819 * 26 4 3 28 28 H 1.08996 * 109.47562 * 59.99852 * 1 2 3 29 29 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47072 * 299.99941 * 1 2 3 31 31 H 1.08994 * 109.46509 * 239.99948 * 2 1 3 32 32 H 1.08996 * 109.47286 * 119.99675 * 2 1 3 33 33 H 1.08991 * 109.47921 * 60.00198 * 3 2 1 34 34 H 1.09006 * 109.46988 * 299.99893 * 3 2 1 35 35 H 1.08993 * 109.48252 * 62.12398 * 5 4 3 36 36 H 1.08997 * 109.48368 * 302.07706 * 5 4 3 37 37 H 1.09001 * 109.48110 * 183.49915 * 6 5 4 38 38 H 1.09000 * 109.49787 * 63.46927 * 6 5 4 39 39 H 1.09009 * 109.52482 * 301.47836 * 10 8 7 40 40 H 1.09000 * 109.52688 * 61.67378 * 10 8 7 41 41 H 1.08999 * 109.56527 * 185.79352 * 11 10 8 42 42 H 1.08999 * 109.63397 * 65.52726 * 11 10 8 43 43 H 1.08996 * 109.47241 * 299.99901 * 15 13 12 44 44 H 1.09005 * 109.46965 * 59.99725 * 15 13 12 45 45 H 0.96998 * 119.99249 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.62117 * 186.78954 * 25 12 11 47 47 H 1.08993 * 109.77705 * 66.31661 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0355 0.8852 -1.2557 6 6 5.5646 0.8541 -1.1959 7 8 6.0573 2.1722 -0.9368 8 6 5.5651 2.7370 0.2802 9 1 5.8752 2.1158 1.1206 10 6 6.1199 4.1514 0.4593 11 6 5.6130 4.7258 1.7864 12 7 4.1468 4.6393 1.8146 13 6 3.4008 5.7312 2.0749 14 8 2.1911 5.6481 2.0961 15 6 4.0699 7.0553 2.3396 16 16 2.8097 8.3163 2.6523 17 6 3.8410 9.7194 2.9216 18 1 4.9148 9.6189 2.8657 19 6 3.2733 10.9534 3.2067 20 7 4.0438 12.0015 3.4084 21 14 1.4160 11.1268 3.3056 22 1 0.9691 10.8774 4.6996 23 1 1.0247 12.5001 2.8983 24 1 0.7778 10.1404 2.3972 25 6 3.5070 3.3417 1.5547 26 6 4.0355 2.7952 0.2251 27 1 3.7248 3.4481 -0.5905 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6765 1.9563 -0.8900 35 1 3.7169 1.5076 -2.0917 36 1 3.6563 -0.1277 -1.3910 37 1 5.9585 0.4996 -2.1485 38 1 5.8840 0.1834 -0.3983 39 1 7.2094 4.1169 0.4690 40 1 5.7818 4.7822 -0.3629 41 1 5.9187 5.7684 1.8735 42 1 6.0283 4.1532 2.6157 43 1 4.7195 6.9665 3.2103 44 1 4.6633 7.3425 1.4714 45 1 3.6470 12.8639 3.6073 46 1 2.4266 3.4722 1.4931 47 1 3.7465 2.6449 2.3578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176929856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:31 Heat of formation + Delta-G solvation = -74.413720 kcal Electronic energy + Delta-G solvation = -26739.673564 eV Core-core repulsion = 23048.630402 eV Total energy + Delta-G solvation = -3691.043163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87633 -39.22319 -36.93306 -36.43902 -33.44884 -32.45795 -32.33860 -31.13353 -29.53808 -28.14129 -25.83756 -25.52615 -24.97147 -22.99374 -22.53795 -21.05623 -20.57585 -19.31667 -17.79465 -17.20285 -16.63776 -16.24279 -16.09342 -15.78592 -15.42843 -15.20756 -14.97064 -14.69239 -14.62495 -14.25670 -13.81023 -13.68657 -13.50197 -13.30003 -13.04624 -12.79781 -12.60904 -12.45348 -12.10613 -12.07303 -12.03681 -11.68474 -11.53837 -11.33165 -11.27041 -11.15026 -11.02026 -10.77754 -10.67394 -10.57926 -9.87359 -9.82880 -9.52956 -9.01605 -8.76991 -8.70680 -8.50894 -6.93807 -6.30108 -4.02055 2.61149 2.85349 3.07193 3.32082 3.38321 3.45886 3.49521 3.59449 4.26016 4.31994 4.46759 4.50334 4.61221 4.64394 4.67005 4.80592 4.84692 4.88201 4.98856 5.00152 5.04600 5.06596 5.09040 5.17372 5.23762 5.29720 5.38212 5.43260 5.45078 5.49934 5.54185 5.61190 5.66483 5.72231 5.73977 5.77042 5.85670 5.92819 5.95816 5.98422 6.37498 6.59987 6.66905 6.87223 7.37496 7.93009 8.36668 8.40409 9.16114 10.79120 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.002943 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.820274 B = 9512.468945 C =10802.017626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.046 3.954 4 N -0.530 5.530 5 C 0.016 3.984 6 C 0.065 3.935 7 O -0.380 6.380 8 C 0.101 3.899 9 H 0.070 0.930 10 C -0.128 4.128 11 C 0.110 3.890 12 N -0.619 5.619 13 C 0.536 3.464 14 O -0.518 6.518 15 C -0.122 4.122 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.089 0.911 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.236 1.236 25 C 0.123 3.877 26 C 0.041 3.959 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.271 0.729 46 H 0.097 0.903 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 -26.242 -8.290 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.081 4.081 4 N -0.255 5.255 5 C -0.112 4.112 6 C -0.012 4.012 7 O -0.299 6.299 8 C 0.043 3.957 9 H 0.087 0.913 10 C -0.167 4.167 11 C -0.014 4.014 12 N -0.356 5.356 13 C 0.324 3.676 14 O -0.392 6.392 15 C -0.272 4.272 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.107 0.893 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.160 1.160 25 C -0.001 4.001 26 C -0.069 4.069 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.115 0.885 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.036 -26.349 -7.945 27.541 hybrid contribution 0.318 0.758 -0.530 0.978 sum 1.354 -25.591 -8.475 26.992 Atomic orbital electron populations 1.21746 0.95409 1.01774 1.02154 1.21514 0.95617 0.96015 1.02458 1.22321 0.86365 0.97646 1.01787 1.62239 1.08288 1.20722 1.34261 1.22844 0.96437 1.01095 0.90844 1.22641 0.92169 0.84660 1.01754 1.87994 1.69847 1.30636 1.41405 1.22123 0.91115 0.95037 0.87434 0.91253 1.21941 1.01870 0.94236 0.98616 1.21754 0.79582 1.03316 0.96724 1.48081 1.06689 1.08656 1.72138 1.20332 0.87245 0.84689 0.75380 1.90686 1.13837 1.84814 1.49879 1.23317 1.03698 0.94972 1.05257 1.84804 1.11144 1.02700 1.92988 1.22300 0.95452 0.93359 1.55704 0.89347 1.24710 0.98751 0.94565 0.93272 1.69940 1.35619 1.00248 1.45851 0.86736 0.85389 0.79195 0.80546 1.19193 1.19939 1.15953 1.21492 0.99435 0.84005 0.95120 1.22630 0.96112 0.89576 0.98564 0.92624 0.92802 0.92506 0.92354 0.92184 0.91070 0.89795 0.94528 0.93915 0.89231 0.88441 0.92246 0.89184 0.90374 0.88212 0.90803 0.88368 0.88382 0.91929 0.88502 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.87 5.86 -26.73 -0.16 -1.03 16 3 C 0.05 0.42 4.74 -3.82 -0.02 0.41 16 4 N -0.53 -5.02 4.55 -226.27 -1.03 -6.06 16 5 C 0.02 0.13 5.42 -3.70 -0.02 0.11 16 6 C 0.06 0.51 7.00 37.19 0.26 0.77 16 7 O -0.38 -4.05 10.50 -35.23 -0.37 -4.42 16 8 C 0.10 1.02 2.62 -26.65 -0.07 0.95 16 9 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 10 C -0.13 -1.23 5.76 -26.61 -0.15 -1.38 16 11 C 0.11 1.13 6.33 -3.70 -0.02 1.10 16 12 N -0.62 -8.37 2.98 -172.74 -0.51 -8.88 16 13 C 0.54 9.61 7.71 -10.99 -0.08 9.52 16 14 O -0.52 -11.12 15.27 5.56 0.08 -11.04 16 15 C -0.12 -2.34 4.50 36.01 0.16 -2.18 16 16 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 17 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 18 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.45 13.97 55.49 0.78 -25.68 16 21 Si 0.86 21.73 27.74 -169.99 -4.72 17.02 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 25 C 0.12 1.49 5.27 -3.69 -0.02 1.47 16 26 C 0.04 0.45 1.97 -67.54 -0.13 0.31 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.40 6.51 -51.93 -0.34 0.06 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.85 5.93 -51.93 -0.31 0.54 16 34 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.58 6.38 -51.93 -0.33 0.25 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.03 5.92 -51.93 -0.31 0.72 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 1.74 7.95 -51.92 -0.41 1.33 16 44 H 0.10 1.75 7.68 -51.91 -0.40 1.35 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.10 1.34 5.38 -51.93 -0.28 1.06 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -33.28 373.20 -9.68 -42.96 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.87 Total: -1.43 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 0.33 Total: -2.51 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: -0.77 Total: -40.61 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.28 Total: -15.46 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.28 -9.68 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176929856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.450 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds