Wall clock time and date at job start Tue Mar 31 2020 16:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46807 * 2 1 4 4 N 1.46905 * 109.46944 * 180.02562 * 3 2 1 5 5 C 1.47071 * 111.00054 * 66.04271 * 4 3 2 6 6 C 1.53059 * 109.39453 * 182.10086 * 5 4 3 7 7 O 1.43081 * 109.41069 * 303.47835 * 6 5 4 8 8 C 1.42903 * 113.55947 * 58.50225 * 7 6 5 9 9 H 1.09002 * 109.47736 * 60.87388 * 8 7 6 10 10 C 1.52989 * 109.88624 * 181.14101 * 8 7 6 11 11 C 1.53240 * 109.14488 * 181.53986 * 10 8 7 12 12 N 1.46895 * 108.94847 * 305.63729 * 11 10 8 13 13 C 1.34778 * 120.56050 * 233.10890 * 12 11 10 14 14 O 1.21279 * 120.00040 * 180.02562 * 13 12 11 15 15 C 1.50699 * 119.99957 * 0.02562 * 13 12 11 16 16 S 1.80998 * 109.47233 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00140 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99823 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99931 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99502 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00264 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47342 * 89.99684 * 21 19 17 23 23 H 1.48495 * 109.47208 * 210.00237 * 21 19 17 24 24 H 1.48504 * 109.46916 * 329.99784 * 21 19 17 25 25 C 1.46993 * 118.88330 * 53.13048 * 12 11 10 26 26 C 1.46900 * 110.99985 * 189.47507 * 4 3 2 27 27 H 1.08995 * 109.53831 * 297.37819 * 26 4 3 28 28 H 1.08996 * 109.47562 * 59.99852 * 1 2 3 29 29 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47072 * 299.99941 * 1 2 3 31 31 H 1.08994 * 109.46509 * 239.99948 * 2 1 3 32 32 H 1.08996 * 109.47286 * 119.99675 * 2 1 3 33 33 H 1.08991 * 109.47921 * 60.00198 * 3 2 1 34 34 H 1.09006 * 109.46988 * 299.99893 * 3 2 1 35 35 H 1.08993 * 109.48252 * 62.12398 * 5 4 3 36 36 H 1.08997 * 109.48368 * 302.07706 * 5 4 3 37 37 H 1.09001 * 109.48110 * 183.49915 * 6 5 4 38 38 H 1.09000 * 109.49787 * 63.46927 * 6 5 4 39 39 H 1.09009 * 109.52482 * 301.47836 * 10 8 7 40 40 H 1.09000 * 109.52688 * 61.67378 * 10 8 7 41 41 H 1.08999 * 109.56527 * 185.79352 * 11 10 8 42 42 H 1.08999 * 109.63397 * 65.52726 * 11 10 8 43 43 H 1.08996 * 109.47241 * 299.99901 * 15 13 12 44 44 H 1.09005 * 109.46965 * 59.99725 * 15 13 12 45 45 H 0.96998 * 119.99249 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.62117 * 186.78954 * 25 12 11 47 47 H 1.08993 * 109.77705 * 66.31661 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0355 0.8852 -1.2557 6 6 5.5646 0.8541 -1.1959 7 8 6.0573 2.1722 -0.9368 8 6 5.5651 2.7370 0.2802 9 1 5.8752 2.1158 1.1206 10 6 6.1199 4.1514 0.4593 11 6 5.6130 4.7258 1.7864 12 7 4.1468 4.6393 1.8146 13 6 3.4008 5.7312 2.0749 14 8 2.1911 5.6481 2.0961 15 6 4.0699 7.0553 2.3396 16 16 2.8097 8.3163 2.6523 17 6 3.8410 9.7194 2.9216 18 1 4.9148 9.6189 2.8657 19 6 3.2733 10.9534 3.2067 20 7 4.0438 12.0015 3.4084 21 14 1.4160 11.1268 3.3056 22 1 0.9691 10.8774 4.6996 23 1 1.0247 12.5001 2.8983 24 1 0.7778 10.1404 2.3972 25 6 3.5070 3.3417 1.5547 26 6 4.0355 2.7952 0.2251 27 1 3.7248 3.4481 -0.5905 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6765 1.9563 -0.8900 35 1 3.7169 1.5076 -2.0917 36 1 3.6563 -0.1277 -1.3910 37 1 5.9585 0.4996 -2.1485 38 1 5.8840 0.1834 -0.3983 39 1 7.2094 4.1169 0.4690 40 1 5.7818 4.7822 -0.3629 41 1 5.9187 5.7684 1.8735 42 1 6.0283 4.1532 2.6157 43 1 4.7195 6.9665 3.2103 44 1 4.6633 7.3425 1.4714 45 1 3.6470 12.8639 3.6073 46 1 2.4266 3.4722 1.4931 47 1 3.7465 2.6449 2.3578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176929856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:30 Heat of formation + Delta-G solvation = -97.417917 kcal Electronic energy + Delta-G solvation = -26740.671101 eV Core-core repulsion = 23048.630402 eV Total energy + Delta-G solvation = -3692.040700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.82107 -40.39005 -37.70489 -37.52311 -34.67608 -34.15856 -33.33968 -32.08532 -30.74875 -28.99990 -27.86991 -26.62826 -25.76423 -23.83329 -23.36536 -21.83050 -21.38485 -20.62362 -19.59599 -18.47464 -17.55707 -17.19433 -17.13204 -17.00552 -16.83229 -16.38244 -16.16807 -15.65781 -15.55567 -15.36828 -15.16328 -14.90035 -14.64739 -14.41941 -14.14949 -13.94146 -13.63020 -13.37926 -13.32811 -13.26796 -13.02356 -12.83716 -12.74899 -12.62562 -12.44462 -12.30810 -12.05883 -11.88149 -11.85015 -11.47815 -11.36686 -11.17628 -11.01600 -10.58711 -10.52562 -9.85910 -9.56237 -9.01350 -8.51977 -6.22956 0.94818 1.30529 1.42377 1.45525 1.51504 1.92699 2.24226 2.60487 2.68633 2.71561 2.86382 3.36883 3.61674 3.64610 3.80063 3.87054 3.97181 4.00670 4.12150 4.16204 4.17019 4.22448 4.33371 4.39055 4.39657 4.43314 4.47732 4.57177 4.61683 4.65261 4.71866 4.75516 4.80872 4.87011 4.93012 4.96094 5.13926 5.16033 5.24713 5.31397 5.40393 5.70744 5.82517 5.87466 6.11447 6.13967 6.16374 6.93364 6.99629 8.60359 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.002943 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.820274 B = 9512.468945 C =10802.017626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C 0.046 3.954 4 N -0.526 5.526 5 C 0.016 3.984 6 C 0.061 3.939 7 O -0.397 6.397 8 C 0.104 3.896 9 H 0.083 0.917 10 C -0.123 4.123 11 C 0.103 3.897 12 N -0.607 5.607 13 C 0.536 3.464 14 O -0.562 6.562 15 C -0.106 4.106 16 S -0.178 6.178 17 C -0.526 4.526 18 H 0.065 0.935 19 C 0.046 3.954 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.238 1.238 25 C 0.126 3.874 26 C 0.048 3.952 27 H 0.027 0.973 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.029 0.971 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.277 0.723 46 H 0.076 0.924 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.248 -28.705 -8.488 30.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.081 4.081 4 N -0.251 5.251 5 C -0.112 4.112 6 C -0.015 4.015 7 O -0.316 6.316 8 C 0.046 3.954 9 H 0.101 0.899 10 C -0.161 4.161 11 C -0.018 4.018 12 N -0.341 5.341 13 C 0.324 3.676 14 O -0.440 6.440 15 C -0.257 4.257 16 S 0.048 5.952 17 C -0.674 4.674 18 H 0.083 0.917 19 C -0.159 4.159 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.186 1.186 23 H -0.184 1.184 24 H -0.162 1.162 25 C 0.003 3.997 26 C -0.062 4.062 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.131 0.869 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.794 -28.846 -8.158 30.031 hybrid contribution 0.219 1.369 -0.529 1.484 sum 2.013 -27.477 -8.687 28.888 Atomic orbital electron populations 1.21747 0.95206 1.02454 1.01643 1.21458 0.95725 0.94522 1.03065 1.22326 0.86400 0.98830 1.00559 1.62316 1.08281 1.19451 1.35102 1.22939 0.96917 1.01774 0.89567 1.22854 0.91703 0.83692 1.03254 1.87976 1.70062 1.32004 1.41536 1.22123 0.89937 0.95452 0.87915 0.89936 1.21902 1.03120 0.93703 0.97384 1.22064 0.77228 1.04201 0.98340 1.48074 1.08045 1.07906 1.70080 1.20069 0.86754 0.85175 0.75592 1.90672 1.15534 1.85432 1.52351 1.23286 1.01937 0.93755 1.06713 1.84752 1.13635 1.03561 1.93215 1.22432 0.94872 0.94900 1.55149 0.91704 1.25536 1.02918 0.94399 0.93058 1.70014 1.37510 1.00936 1.46952 0.85889 0.80344 0.79649 0.80634 1.18644 1.18362 1.16246 1.21548 0.98283 0.83383 0.96500 1.22495 0.97171 0.89886 0.96635 0.95507 0.93133 0.91194 0.93105 0.91053 0.90812 0.91095 0.95813 0.95229 0.87106 0.86468 0.91140 0.86935 0.92084 0.88068 0.87845 0.86480 0.86934 0.91363 0.90606 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.11 -1.45 5.86 30.59 0.18 -1.27 16 3 C 0.05 0.83 4.74 86.30 0.41 1.24 16 4 N -0.53 -9.28 4.55 -869.78 -3.96 -13.25 16 5 C 0.02 0.23 5.42 86.29 0.47 0.69 16 6 C 0.06 0.81 7.00 72.00 0.50 1.31 16 7 O -0.40 -7.56 10.50 -148.98 -1.56 -9.12 16 8 C 0.10 1.86 2.62 30.65 0.08 1.94 16 9 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 10 C -0.12 -2.09 5.76 30.67 0.18 -1.91 16 11 C 0.10 1.87 6.33 86.38 0.55 2.42 16 12 N -0.61 -15.67 2.98 -818.81 -2.44 -18.11 16 13 C 0.54 19.03 7.71 87.66 0.68 19.71 16 14 O -0.56 -24.47 15.27 -3.03 -0.05 -24.52 16 15 C -0.11 -4.01 4.50 71.24 0.32 -3.69 16 16 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 17 C -0.53 -30.44 10.04 67.95 0.68 -29.76 16 18 H 0.06 3.93 8.03 -2.91 -0.02 3.91 16 19 C 0.05 2.72 5.50 84.86 0.47 3.18 16 20 N -0.92 -55.63 13.97 21.65 0.30 -55.33 16 21 Si 0.91 45.07 27.74 68.60 1.90 46.97 16 22 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 25 C 0.13 2.94 5.27 86.34 0.46 3.40 16 26 C 0.05 1.01 1.97 45.02 0.09 1.10 16 27 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.79 6.51 -2.39 -0.02 0.77 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.46 5.93 -2.39 -0.01 1.44 16 34 H 0.02 0.48 8.12 -2.38 -0.02 0.46 16 35 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.11 1.13 6.38 -2.39 -0.02 1.11 16 37 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.84 5.92 -2.39 -0.01 1.83 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.12 3.99 7.95 -2.40 -0.02 3.97 16 44 H 0.11 3.93 7.68 -2.39 -0.02 3.91 16 45 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.08 2.15 5.38 -2.39 -0.01 2.13 16 47 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -72.91 373.20 -0.17 -73.08 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.91 Total: 13.22 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.77 Total: -2.88 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -6.09 Total: -86.68 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -1.61 Total: -33.64 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.90 Total: 46.97 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -72.91 -0.17 -73.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176929856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.334 kcal (2) G-P(sol) polarization free energy of solvation -72.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds