Wall clock time and date at job start Tue Mar 31 2020 15:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21790 * 119.99306 * 0.02562 * 14 13 3 16 16 C 1.41476 * 120.00325 * 180.02562 * 14 13 3 17 17 C 1.35470 * 119.99628 * 179.97438 * 16 14 13 18 18 C 1.46361 * 119.99655 * 179.97438 * 17 16 14 19 19 C 1.36684 * 126.78003 * 359.69230 * 18 17 16 20 20 N 1.35561 * 109.70987 * 179.82684 * 19 18 17 21 21 H 0.96998 * 124.79222 * 180.15473 * 20 19 18 22 22 C 1.38155 * 110.41848 * 0.45047 * 20 19 18 23 23 C 1.39122 * 133.06328 * 179.68118 * 22 20 19 24 24 C 1.37727 * 120.01538 * 180.02562 * 23 22 20 25 25 C 1.39177 * 120.57140 * 0.04726 * 24 23 22 26 26 O 1.35972 * 119.90799 * 179.97438 * 25 24 23 27 27 C 1.42900 * 117.00399 * 0.03072 * 26 25 24 28 28 C 1.38218 * 120.17810 * 359.97438 * 25 24 23 29 29 C 1.39256 * 119.63339 * 359.97438 * 28 25 24 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 37 37 H 1.07991 * 120.00006 * 359.97438 * 16 14 13 38 38 H 1.08001 * 120.00323 * 359.97438 * 17 16 14 39 39 H 1.08000 * 125.14210 * 359.96793 * 19 18 17 40 40 H 1.08008 * 119.99221 * 0.05297 * 23 22 20 41 41 H 1.07995 * 119.71299 * 180.02562 * 24 23 22 42 42 H 1.08999 * 109.47236 * 179.97438 * 27 26 25 43 43 H 1.09007 * 109.46702 * 299.99390 * 27 26 25 44 44 H 1.09000 * 109.47132 * 59.98807 * 27 26 25 45 45 H 1.08003 * 120.18574 * 180.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3428 2.6318 0.4304 16 6 0.0610 3.2974 2.5756 17 6 -1.1624 3.8677 2.6910 18 6 -1.5496 4.5221 3.9416 19 6 -0.7940 4.6333 5.0751 20 7 -1.4887 5.3086 6.0233 21 1 -1.1576 5.5129 6.9118 22 6 -2.7376 5.6590 5.5477 23 6 -3.8123 6.3393 6.1115 24 6 -4.9593 6.5448 5.3773 25 6 -5.0567 6.0760 4.0705 26 8 -6.1957 6.2859 3.3581 27 6 -7.2496 6.9944 4.0134 28 6 -3.9989 5.3977 3.4949 29 6 -2.8349 5.1865 4.2296 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0604 -2.9502 36 1 2.2719 2.1232 1.9977 37 1 0.7507 3.3260 3.4061 38 1 -1.8519 3.8395 1.8603 39 1 0.2062 4.2443 5.1962 40 1 -3.7468 6.7069 7.1250 41 1 -5.7904 7.0739 5.8196 42 1 -8.0973 7.0933 3.3354 43 1 -7.5578 6.4456 4.9033 44 1 -6.8973 7.9849 4.3013 45 1 -4.0742 5.0342 2.4807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185755871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:07 Heat of formation + Delta-G solvation = -3.574579 kcal Electronic energy + Delta-G solvation = -26387.732714 eV Core-core repulsion = 22564.317416 eV Total energy + Delta-G solvation = -3823.415298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.54249 -39.51701 -38.97135 -36.03290 -35.13785 -33.81233 -32.26865 -31.51905 -30.71109 -29.38544 -28.50172 -27.21281 -26.79584 -23.98382 -23.26001 -22.64789 -21.77605 -20.28237 -19.27190 -18.70972 -18.18606 -17.86728 -17.01028 -16.40612 -15.94880 -15.77370 -15.57563 -15.14251 -14.70267 -14.34812 -14.30550 -14.03869 -13.74444 -13.41870 -13.28871 -13.03911 -12.87753 -12.56735 -12.37908 -12.09660 -11.91327 -11.45019 -11.40131 -11.16864 -10.95531 -10.93456 -10.91658 -10.76493 -10.51447 -10.25726 -10.06113 -9.53620 -9.12613 -8.97449 -8.88633 -8.41661 -8.15949 -7.70245 -7.37042 -6.05164 -4.14153 0.69514 1.22382 1.55273 2.80007 2.90892 3.09402 3.29369 3.34613 3.35804 3.65329 4.28008 4.31698 4.40104 4.45492 4.62777 4.68733 4.79878 4.86059 4.94490 5.05670 5.11488 5.18181 5.25710 5.32043 5.43098 5.62976 5.75969 5.85421 6.02339 6.10746 6.25293 6.48407 6.49998 6.56279 6.57837 6.69441 6.79370 6.85592 7.16082 7.19891 7.23649 7.32792 7.49085 7.61047 7.71111 7.86441 8.01309 8.27808 8.82031 8.88688 9.31883 9.53970 11.00125 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022316 B = 0.002135 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.427724 B =13110.617481 C =13883.331220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.706 5.706 14 C 0.534 3.466 15 O -0.560 6.560 16 C -0.223 4.223 17 C 0.013 3.987 18 C -0.162 4.162 19 C 0.092 3.908 20 N -0.584 5.584 21 H 0.417 0.583 22 C 0.056 3.944 23 C -0.088 4.088 24 C -0.182 4.182 25 C 0.103 3.897 26 O -0.317 6.317 27 C 0.029 3.971 28 C -0.108 4.108 29 C -0.047 4.047 30 H 0.020 0.980 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.029 0.971 34 H 0.097 0.903 35 H 0.264 0.736 36 H 0.387 0.613 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.180 0.820 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.232 12.635 20.327 28.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.167 3.833 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.323 3.677 15 O -0.442 6.442 16 C -0.245 4.245 17 C -0.008 4.008 18 C -0.170 4.170 19 C -0.039 4.039 20 N -0.185 5.185 21 H 0.254 0.746 22 C -0.048 4.048 23 C -0.108 4.108 24 C -0.201 4.201 25 C 0.058 3.942 26 O -0.231 6.231 27 C -0.066 4.066 28 C -0.128 4.128 29 C -0.051 4.051 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.219 0.781 37 H 0.132 0.868 38 H 0.152 0.848 39 H 0.197 0.803 40 H 0.141 0.859 41 H 0.149 0.851 42 H 0.116 0.884 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.741 12.468 19.371 27.901 hybrid contribution 1.478 0.190 1.040 1.817 sum -14.263 12.658 20.411 27.934 Atomic orbital electron populations 1.21835 0.98305 0.97856 1.01393 1.21920 0.92671 0.99861 1.02073 1.18737 0.93971 0.89182 0.81373 0.93327 1.21220 0.90891 1.38844 1.06183 0.92241 1.24892 0.98472 0.94937 0.95462 1.69893 1.35103 1.37669 1.09304 0.86534 0.85076 0.78236 0.77371 1.20251 1.21190 1.20242 1.46426 1.14759 1.55847 1.18291 1.16925 0.82941 0.79816 0.88043 1.90794 1.51465 1.60874 1.41083 1.21972 0.98150 1.05240 0.99126 1.21545 0.95408 0.90196 0.93673 1.19123 0.93706 1.09050 0.95093 1.22224 0.97636 0.96021 0.87990 1.41460 1.12603 1.49286 1.15193 0.74561 1.18156 0.87634 1.04364 0.94658 1.19777 0.91176 1.00208 0.99664 1.20881 0.99175 1.05858 0.94230 1.18626 0.87034 0.97995 0.90576 1.86102 1.22810 1.73010 1.41161 1.23019 0.89168 0.95643 0.98807 1.19635 0.90337 1.01882 1.00920 1.18730 0.93764 0.99913 0.92727 0.96058 0.93162 0.94102 0.95197 0.88446 0.92588 0.78142 0.86780 0.84833 0.80322 0.85855 0.85123 0.88350 0.92849 0.92850 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.51 37.16 0.32 -2.86 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.95 2.24 -69.08 -0.15 6.80 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -25.12 11.29 55.43 0.63 -24.50 16 9 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.71 -15.06 5.01 -57.87 -0.29 -15.35 16 14 C 0.53 10.98 6.12 -15.03 -0.09 10.89 16 15 O -0.56 -13.54 13.23 5.11 0.07 -13.47 16 16 C -0.22 -3.47 9.32 -39.34 -0.37 -3.84 16 17 C 0.01 0.19 9.68 -37.30 -0.36 -0.17 16 18 C -0.16 -2.03 6.24 -103.41 -0.64 -2.68 16 19 C 0.09 0.85 11.23 -16.47 -0.18 0.66 16 20 N -0.58 -4.59 6.00 -10.35 -0.06 -4.65 16 21 H 0.42 1.78 8.96 -40.82 -0.37 1.42 16 22 C 0.06 0.58 7.25 -83.89 -0.61 -0.03 16 23 C -0.09 -0.75 10.06 -39.44 -0.40 -1.14 16 24 C -0.18 -1.61 9.01 -39.42 -0.36 -1.97 16 25 C 0.10 1.15 6.68 -39.24 -0.26 0.89 16 26 O -0.32 -3.38 10.49 -19.65 -0.21 -3.59 16 27 C 0.03 0.18 9.81 101.05 0.99 1.17 16 28 C -0.11 -1.37 10.02 -39.21 -0.39 -1.76 16 29 C -0.05 -0.59 6.35 -104.93 -0.67 -1.26 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 32 H 0.04 0.93 5.64 -51.93 -0.29 0.63 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.39 7.10 8.50 -40.82 -0.35 6.76 16 37 H 0.11 1.37 6.88 -52.49 -0.36 1.01 16 38 H 0.13 2.17 7.45 -52.49 -0.39 1.78 16 39 H 0.18 1.13 7.19 -52.49 -0.38 0.75 16 40 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.13 0.80 6.26 -52.49 -0.33 0.47 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.26 7.65 -51.92 -0.40 -0.13 16 44 H 0.05 0.26 7.65 -51.93 -0.40 -0.13 16 45 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -34.08 373.04 -9.01 -43.09 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.02 Total: 8.54 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -3.72 Total: -11.52 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.27 Total: -44.50 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.14 Total: -17.06 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.08 -9.01 -43.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185755871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.513 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds