Wall clock time and date at job start Tue Mar 31 2020 15:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21790 * 119.99306 * 0.02562 * 14 13 3 16 16 C 1.41476 * 120.00325 * 180.02562 * 14 13 3 17 17 C 1.35470 * 119.99628 * 179.97438 * 16 14 13 18 18 C 1.46361 * 119.99655 * 179.97438 * 17 16 14 19 19 C 1.36684 * 126.78003 * 359.69230 * 18 17 16 20 20 N 1.35561 * 109.70987 * 179.82684 * 19 18 17 21 21 H 0.96998 * 124.79222 * 180.15473 * 20 19 18 22 22 C 1.38155 * 110.41848 * 0.45047 * 20 19 18 23 23 C 1.39122 * 133.06328 * 179.68118 * 22 20 19 24 24 C 1.37727 * 120.01538 * 180.02562 * 23 22 20 25 25 C 1.39177 * 120.57140 * 0.04726 * 24 23 22 26 26 O 1.35972 * 119.90799 * 179.97438 * 25 24 23 27 27 C 1.42900 * 117.00399 * 0.03072 * 26 25 24 28 28 C 1.38218 * 120.17810 * 359.97438 * 25 24 23 29 29 C 1.39256 * 119.63339 * 359.97438 * 28 25 24 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 37 37 H 1.07991 * 120.00006 * 359.97438 * 16 14 13 38 38 H 1.08001 * 120.00323 * 359.97438 * 17 16 14 39 39 H 1.08000 * 125.14210 * 359.96793 * 19 18 17 40 40 H 1.08008 * 119.99221 * 0.05297 * 23 22 20 41 41 H 1.07995 * 119.71299 * 180.02562 * 24 23 22 42 42 H 1.08999 * 109.47236 * 179.97438 * 27 26 25 43 43 H 1.09007 * 109.46702 * 299.99390 * 27 26 25 44 44 H 1.09000 * 109.47132 * 59.98807 * 27 26 25 45 45 H 1.08003 * 120.18574 * 180.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3428 2.6318 0.4304 16 6 0.0610 3.2974 2.5756 17 6 -1.1624 3.8677 2.6910 18 6 -1.5496 4.5221 3.9416 19 6 -0.7940 4.6333 5.0751 20 7 -1.4887 5.3086 6.0233 21 1 -1.1576 5.5129 6.9118 22 6 -2.7376 5.6590 5.5477 23 6 -3.8123 6.3393 6.1115 24 6 -4.9593 6.5448 5.3773 25 6 -5.0567 6.0760 4.0705 26 8 -6.1957 6.2859 3.3581 27 6 -7.2496 6.9944 4.0134 28 6 -3.9989 5.3977 3.4949 29 6 -2.8349 5.1865 4.2296 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0604 -2.9502 36 1 2.2719 2.1232 1.9977 37 1 0.7507 3.3260 3.4061 38 1 -1.8519 3.8395 1.8603 39 1 0.2062 4.2443 5.1962 40 1 -3.7468 6.7069 7.1250 41 1 -5.7904 7.0739 5.8196 42 1 -8.0973 7.0933 3.3354 43 1 -7.5578 6.4456 4.9033 44 1 -6.8973 7.9849 4.3013 45 1 -4.0742 5.0342 2.4807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185755871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:06 Heat of formation + Delta-G solvation = -26.387301 kcal Electronic energy + Delta-G solvation = -26388.721948 eV Core-core repulsion = 22564.317416 eV Total energy + Delta-G solvation = -3824.404532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.31048 -40.68402 -40.21605 -37.04204 -36.72126 -34.96936 -34.22395 -32.89875 -32.12298 -30.17068 -29.51681 -28.74542 -27.70585 -25.52266 -24.36148 -24.00593 -22.58060 -21.82358 -21.03051 -19.83736 -19.10495 -18.76007 -18.46925 -17.37157 -17.22081 -17.04123 -16.60411 -16.39508 -16.13806 -15.95145 -15.41452 -14.97536 -14.84395 -14.67649 -14.46585 -14.15169 -13.98350 -13.74613 -13.68450 -13.44799 -13.13642 -12.98791 -12.86923 -12.77351 -12.62783 -12.47086 -12.15516 -12.01324 -11.71214 -11.67303 -11.55282 -11.40223 -11.01903 -10.64555 -10.46766 -10.11067 -9.51957 -8.91707 -8.29081 -8.12187 -6.29783 -0.17235 0.28860 0.68875 1.46044 1.48683 1.56301 1.92043 2.13386 2.40894 2.45234 2.73219 2.92945 2.93334 3.16962 3.72538 3.79815 3.95324 4.07289 4.27888 4.30566 4.38689 4.45072 4.46573 4.48282 4.52102 4.60426 4.68236 4.76137 4.80365 4.86462 5.00174 5.05845 5.10810 5.26894 5.34281 5.44048 5.48391 5.51745 5.57321 5.60606 5.66594 5.73049 5.85370 5.98000 6.04418 6.21782 6.52325 6.64848 6.79143 7.15285 7.37870 7.74916 8.93107 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022316 B = 0.002135 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.427724 B =13110.617481 C =13883.331220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.277 3.723 4 H -0.007 1.007 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 0.973 3.027 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.704 5.704 14 C 0.531 3.469 15 O -0.610 6.610 16 C -0.247 4.247 17 C 0.041 3.959 18 C -0.216 4.216 19 C 0.136 3.864 20 N -0.561 5.561 21 H 0.440 0.560 22 C 0.043 3.957 23 C -0.072 4.072 24 C -0.185 4.185 25 C 0.101 3.899 26 O -0.345 6.345 27 C 0.019 3.981 28 C -0.152 4.152 29 C -0.069 4.069 30 H 0.044 0.956 31 H 0.022 0.978 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.264 0.736 36 H 0.404 0.596 37 H 0.159 0.841 38 H 0.101 0.899 39 H 0.219 0.781 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.112 0.888 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.417 14.044 25.047 32.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.173 3.827 4 H 0.011 0.989 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.188 4.188 8 N -0.555 5.555 9 Si 0.797 3.203 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.352 5.352 14 C 0.323 3.677 15 O -0.496 6.496 16 C -0.268 4.268 17 C 0.019 3.981 18 C -0.223 4.223 19 C 0.002 3.998 20 N -0.164 5.164 21 H 0.281 0.719 22 C -0.061 4.061 23 C -0.091 4.091 24 C -0.205 4.205 25 C 0.055 3.945 26 O -0.259 6.259 27 C -0.075 4.075 28 C -0.172 4.172 29 C -0.073 4.073 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.239 0.761 37 H 0.176 0.824 38 H 0.119 0.881 39 H 0.235 0.765 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.935 13.911 24.176 31.639 hybrid contribution 0.992 -0.104 -0.334 1.052 sum -13.943 13.807 23.842 30.878 Atomic orbital electron populations 1.21666 0.97193 0.98899 1.00188 1.21769 0.93563 0.99298 1.01188 1.18317 0.93589 0.89100 0.81680 0.98932 1.21576 0.91425 1.38801 1.06721 0.90911 1.25831 1.03494 0.94454 0.95041 1.70064 1.37157 1.38444 1.09840 0.85394 0.78935 0.78419 0.77535 1.18753 1.21314 1.19659 1.46153 1.15634 1.56046 1.17354 1.17668 0.81919 0.78982 0.89112 1.90770 1.52736 1.62767 1.43302 1.21733 0.99485 1.07281 0.98331 1.21456 0.94278 0.88404 0.93939 1.19036 0.95305 1.12398 0.95592 1.22742 0.98051 0.92618 0.86404 1.41491 1.11498 1.47517 1.15851 0.71883 1.18336 0.88990 1.04951 0.93855 1.20243 0.89863 0.98021 1.01022 1.21233 1.00510 1.05628 0.93086 1.18826 0.86679 0.97369 0.91589 1.86070 1.23550 1.73629 1.42653 1.23338 0.88386 0.96134 0.99687 1.19667 0.92170 1.04707 1.00659 1.18952 0.93678 1.00480 0.94224 0.93680 0.95864 0.93817 0.93999 0.91108 0.92686 0.76140 0.82362 0.88075 0.76475 0.81883 0.82031 0.86966 0.91334 0.91365 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.51 71.98 0.61 -5.30 16 2 C -0.12 -6.18 5.45 30.60 0.17 -6.01 16 3 C 0.28 14.90 2.24 44.25 0.10 14.99 16 4 H -0.01 -0.46 7.58 -2.39 -0.02 -0.48 16 5 C -0.55 -29.75 8.73 25.60 0.22 -29.52 16 6 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 7 C 0.01 0.64 5.29 84.66 0.45 1.09 16 8 N -0.92 -54.01 11.29 21.45 0.24 -53.77 16 9 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 10 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 N -0.70 -30.61 5.01 -455.19 -2.28 -32.89 16 14 C 0.53 22.69 6.12 85.04 0.52 23.21 16 15 O -0.61 -31.75 13.23 -4.64 -0.06 -31.81 16 16 C -0.25 -7.65 9.32 22.43 0.21 -7.44 16 17 C 0.04 1.25 9.68 23.74 0.23 1.48 16 18 C -0.22 -5.26 6.24 -19.08 -0.12 -5.38 16 19 C 0.14 2.00 11.23 83.75 0.94 2.94 16 20 N -0.56 -6.37 6.00 -186.67 -1.12 -7.49 16 21 H 0.44 1.30 8.96 -92.71 -0.83 0.47 16 22 C 0.04 0.76 7.25 38.88 0.28 1.05 16 23 C -0.07 -0.95 10.06 22.36 0.22 -0.72 16 24 C -0.19 -2.81 9.01 22.37 0.20 -2.61 16 25 C 0.10 2.26 6.68 22.49 0.15 2.41 16 26 O -0.34 -7.48 10.49 -93.24 -0.98 -8.46 16 27 C 0.02 0.20 9.81 113.37 1.11 1.31 16 28 C -0.15 -4.15 10.02 22.51 0.23 -3.92 16 29 C -0.07 -1.73 6.35 -20.07 -0.13 -1.86 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.02 1.20 7.84 -2.39 -0.02 1.18 16 32 H 0.04 2.06 5.64 -2.38 -0.01 2.05 16 33 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 4.07 5.95 -2.39 -0.01 4.05 16 35 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.40 14.53 8.50 -92.71 -0.79 13.74 16 37 H 0.16 3.33 6.88 -2.91 -0.02 3.31 16 38 H 0.10 3.70 7.45 -2.91 -0.02 3.68 16 39 H 0.22 1.48 7.19 -2.91 -0.02 1.46 16 40 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 41 H 0.16 1.36 6.26 -2.91 -0.02 1.34 16 42 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.52 7.65 -2.38 -0.02 0.50 16 44 H 0.07 0.52 7.65 -2.39 -0.02 0.50 16 45 H 0.11 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -81.27 373.04 2.65 -78.62 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.58 Total: 25.21 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 5.40 Total: -14.28 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -3.16 Total: -94.15 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.04 Total: -40.27 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -81.27 2.65 -78.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185755871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.236 kcal (2) G-P(sol) polarization free energy of solvation -81.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds