Wall clock time and date at job start Tue Mar 31 2020 15:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21622 * 120.00137 * 359.97438 * 14 13 3 16 16 C 1.47315 * 119.99707 * 179.97438 * 14 13 3 17 17 C 1.37832 * 126.52539 * 0.02562 * 16 14 13 18 18 N 1.34787 * 108.26224 * 179.97438 * 17 16 14 19 19 H 0.97005 * 125.37079 * 180.02562 * 18 17 16 20 20 C 1.37323 * 109.26843 * 359.97438 * 18 17 16 21 21 C 1.47921 * 125.76935 * 180.02562 * 20 18 17 22 22 C 1.39584 * 120.11138 * 179.70169 * 21 20 18 23 23 C 1.37976 * 119.96725 * 179.76655 * 22 21 20 24 24 C 1.38287 * 120.19620 * 0.51050 * 23 22 21 25 25 C 1.38820 * 120.23090 * 359.74386 * 24 23 22 26 26 O 1.35902 * 119.98254 * 179.97438 * 25 24 23 27 27 C 1.42899 * 117.00259 * 0.02562 * 26 25 24 28 28 C 1.38494 * 120.02736 * 359.97438 * 25 24 23 29 29 C 1.35755 * 108.45902 * 359.76873 * 20 18 17 30 30 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 31 31 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 32 32 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 34 34 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 35 35 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 37 37 H 1.07997 * 125.86848 * 359.97438 * 17 16 14 38 38 H 1.07998 * 120.01618 * 0.02562 * 22 21 20 39 39 H 1.07993 * 119.89923 * 180.23231 * 23 22 21 40 40 H 1.07998 * 119.87971 * 179.72261 * 24 23 22 41 41 H 1.09000 * 109.47316 * 179.97438 * 27 26 25 42 42 H 1.08995 * 109.47514 * 300.00525 * 27 26 25 43 43 H 1.08999 * 109.47213 * 60.00282 * 27 26 25 44 44 H 1.08004 * 120.09435 * 179.97438 * 28 25 24 45 45 H 1.08006 * 126.46947 * 180.22946 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3414 2.6325 0.4316 16 6 0.0452 3.3223 2.6261 17 6 0.8142 3.4369 3.7642 18 7 0.0996 4.1052 4.6913 19 1 0.4051 4.3237 5.5857 20 6 -1.1288 4.4289 4.1699 21 6 -2.2009 5.1647 4.8752 22 6 -3.4069 5.4366 4.2271 23 6 -4.4066 6.1189 4.8894 24 6 -4.2140 6.5441 6.1911 25 6 -3.0159 6.2828 6.8417 26 8 -2.8318 6.7034 8.1208 27 6 -3.9132 7.4079 8.7341 28 6 -2.0082 5.5935 6.1878 29 6 -1.1909 3.9646 2.8957 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 5.8770 0.4827 -2.1133 36 1 2.2720 2.1230 1.9979 37 1 1.8170 3.0566 3.8913 38 1 -3.5589 5.1095 3.2091 39 1 -5.3407 6.3254 4.3882 40 1 -4.9983 7.0817 6.7031 41 1 -3.6358 7.6854 9.7510 42 1 -4.1338 8.3070 8.1590 43 1 -4.7952 6.7680 8.7604 44 1 -1.0754 5.3900 6.6928 45 1 -2.0248 4.0630 2.2164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193863717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:44 Heat of formation + Delta-G solvation = -4.118598 kcal Electronic energy + Delta-G solvation = -26657.532241 eV Core-core repulsion = 22834.093352 eV Total energy + Delta-G solvation = -3823.438889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.42702 -40.25389 -38.68052 -37.60039 -35.15283 -32.48544 -32.09154 -31.64260 -31.27868 -30.42368 -28.14308 -27.68900 -27.08638 -23.40137 -23.07693 -22.53657 -22.20461 -20.44273 -19.94576 -19.13215 -19.04298 -17.16766 -16.79897 -16.50661 -16.14309 -16.13591 -15.57533 -15.44230 -14.80362 -14.50305 -14.24673 -14.10470 -13.94935 -13.79476 -13.31037 -13.14697 -12.97808 -12.80316 -12.46731 -12.23688 -12.14666 -11.84312 -11.76270 -11.66550 -11.53026 -11.27175 -11.00357 -10.82008 -10.55123 -9.85972 -9.74565 -9.50127 -9.16509 -9.05630 -8.88847 -8.69539 -8.64302 -7.95352 -7.74025 -6.16468 -4.18209 0.67436 1.13430 2.00547 2.56214 2.84632 3.02541 3.28202 3.39936 3.46345 3.61365 4.12691 4.15621 4.36786 4.41668 4.46461 4.67154 4.71362 4.77685 4.95992 4.98130 5.03707 5.09519 5.17688 5.18317 5.26064 5.45138 5.67067 5.89942 5.94026 6.01305 6.07363 6.11574 6.18847 6.25460 6.29138 6.38508 6.72109 6.76122 6.81413 6.87148 6.94881 7.00828 7.07783 7.30900 7.38215 7.41963 7.61020 8.26001 8.64989 8.82259 9.12926 9.45650 10.95586 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.031343 B = 0.002193 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.123725 B =12761.994812 C =13311.234385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.243 3.757 4 H 0.050 0.950 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.259 1.259 12 H -0.295 1.295 13 N -0.700 5.700 14 C 0.575 3.425 15 O -0.553 6.553 16 C -0.210 4.210 17 C 0.052 3.948 18 N -0.538 5.538 19 H 0.417 0.583 20 C 0.019 3.981 21 C 0.039 3.961 22 C -0.143 4.143 23 C -0.070 4.070 24 C -0.217 4.217 25 C 0.134 3.866 26 O -0.320 6.320 27 C 0.028 3.972 28 C -0.162 4.162 29 C -0.100 4.100 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.030 0.970 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.266 0.734 36 H 0.391 0.609 37 H 0.179 0.821 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.124 0.876 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.947 11.009 19.884 28.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.184 1.184 12 H -0.223 1.223 13 N -0.347 5.347 14 C 0.361 3.639 15 O -0.433 6.433 16 C -0.220 4.220 17 C -0.086 4.086 18 N -0.131 5.131 19 H 0.254 0.746 20 C -0.089 4.089 21 C 0.038 3.962 22 C -0.161 4.161 23 C -0.088 4.088 24 C -0.236 4.236 25 C 0.089 3.911 26 O -0.233 6.233 27 C -0.067 4.067 28 C -0.181 4.181 29 C -0.124 4.124 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.224 0.776 37 H 0.196 0.804 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.142 0.858 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.117 10.946 19.348 28.677 hybrid contribution -0.070 -0.300 0.112 0.328 sum -18.187 10.645 19.460 28.684 Atomic orbital electron populations 1.21879 0.96893 0.98908 1.02455 1.22279 0.94432 0.99984 1.00935 1.19125 0.95457 0.88466 0.83006 0.93273 1.21063 0.88705 1.39535 1.07745 0.90268 1.24840 0.94866 0.95202 0.97703 1.69872 1.08691 1.44711 1.29823 0.86898 0.81045 0.79937 0.80831 1.20292 1.18358 1.22271 1.46006 1.14721 1.56227 1.17746 1.17379 0.82227 0.78208 0.86062 1.90729 1.51832 1.60641 1.40075 1.19952 0.96736 1.10002 0.95285 1.22432 0.98067 0.99211 0.88935 1.41632 1.12699 1.44282 1.14491 0.74604 1.18457 0.87067 1.08908 0.94516 1.17782 0.92124 0.94720 0.91617 1.21077 0.92564 1.01581 1.00915 1.20865 0.98709 0.95684 0.93554 1.21256 0.97566 1.07573 0.97227 1.18784 0.93855 0.94614 0.83866 1.86063 1.41702 1.70769 1.24767 1.23059 0.89585 0.95752 0.98331 1.20221 0.99228 1.04147 0.94493 1.20958 0.98020 0.99629 0.93814 0.92679 0.92893 0.95139 0.92923 0.92389 0.92370 0.77601 0.80386 0.84907 0.85294 0.85495 0.88222 0.92563 0.92583 0.85844 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.68 16 2 C -0.14 -3.11 5.11 -26.73 -0.14 -3.25 16 3 C 0.24 5.83 1.83 -69.08 -0.13 5.70 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 5 C -0.53 -14.40 9.31 -34.44 -0.32 -14.73 16 6 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 9 Si 0.88 21.99 24.41 -169.99 -4.15 17.84 16 10 H -0.28 -6.66 6.83 56.52 0.39 -6.28 16 11 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 12 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 13 N -0.70 -14.04 5.01 -56.04 -0.28 -14.33 16 14 C 0.57 11.33 6.38 -12.57 -0.08 11.25 16 15 O -0.55 -12.69 14.06 5.26 0.07 -12.61 16 16 C -0.21 -3.30 6.14 -104.96 -0.64 -3.95 16 17 C 0.05 0.61 11.44 -16.40 -0.19 0.43 16 18 N -0.54 -5.46 5.89 -9.20 -0.05 -5.51 16 19 H 0.42 2.88 8.02 -40.82 -0.33 2.55 16 20 C 0.02 0.23 6.89 -82.33 -0.57 -0.33 16 21 C 0.04 0.42 5.87 -104.99 -0.62 -0.20 16 22 C -0.14 -1.41 9.55 -39.18 -0.37 -1.79 16 23 C -0.07 -0.58 10.03 -39.66 -0.40 -0.98 16 24 C -0.22 -1.80 9.03 -39.35 -0.36 -2.15 16 25 C 0.13 1.29 6.68 -39.27 -0.26 1.02 16 26 O -0.32 -2.85 10.49 -19.43 -0.20 -3.06 16 27 C 0.03 0.14 9.81 101.05 0.99 1.13 16 28 C -0.16 -1.62 9.64 -39.04 -0.38 -2.00 16 29 C -0.10 -1.43 10.02 -39.08 -0.39 -1.82 16 30 H 0.05 1.14 5.64 -51.93 -0.29 0.84 16 31 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.39 6.79 7.45 -40.82 -0.30 6.48 16 37 H 0.18 1.63 7.44 -52.49 -0.39 1.24 16 38 H 0.13 1.22 6.96 -52.49 -0.37 0.85 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.75 6.28 -52.49 -0.33 0.42 16 41 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 43 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 44 H 0.12 1.05 7.13 -52.48 -0.37 0.68 16 45 H 0.15 2.07 7.23 -52.48 -0.38 1.69 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -34.39 363.92 -7.75 -42.15 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.77 Total: 8.08 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -3.63 Total: -12.26 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.44 Total: -45.62 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.13 Total: -15.67 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.15 Total: 17.84 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.39 -7.75 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193863717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.029 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds