Wall clock time and date at job start Tue Mar 31 2020 15:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21622 * 120.00137 * 359.97438 * 14 13 3 16 16 C 1.47315 * 119.99707 * 179.97438 * 14 13 3 17 17 C 1.37832 * 126.52539 * 0.02562 * 16 14 13 18 18 N 1.34787 * 108.26224 * 179.97438 * 17 16 14 19 19 H 0.97005 * 125.37079 * 180.02562 * 18 17 16 20 20 C 1.37323 * 109.26843 * 359.97438 * 18 17 16 21 21 C 1.47921 * 125.76935 * 180.02562 * 20 18 17 22 22 C 1.39584 * 120.11138 * 179.70169 * 21 20 18 23 23 C 1.37976 * 119.96725 * 179.76655 * 22 21 20 24 24 C 1.38287 * 120.19620 * 0.51050 * 23 22 21 25 25 C 1.38820 * 120.23090 * 359.74386 * 24 23 22 26 26 O 1.35902 * 119.98254 * 179.97438 * 25 24 23 27 27 C 1.42899 * 117.00259 * 0.02562 * 26 25 24 28 28 C 1.38494 * 120.02736 * 359.97438 * 25 24 23 29 29 C 1.35755 * 108.45902 * 359.76873 * 20 18 17 30 30 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 31 31 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 32 32 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 34 34 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 35 35 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 37 37 H 1.07997 * 125.86848 * 359.97438 * 17 16 14 38 38 H 1.07998 * 120.01618 * 0.02562 * 22 21 20 39 39 H 1.07993 * 119.89923 * 180.23231 * 23 22 21 40 40 H 1.07998 * 119.87971 * 179.72261 * 24 23 22 41 41 H 1.09000 * 109.47316 * 179.97438 * 27 26 25 42 42 H 1.08995 * 109.47514 * 300.00525 * 27 26 25 43 43 H 1.08999 * 109.47213 * 60.00282 * 27 26 25 44 44 H 1.08004 * 120.09435 * 179.97438 * 28 25 24 45 45 H 1.08006 * 126.46947 * 180.22946 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3414 2.6325 0.4316 16 6 0.0452 3.3223 2.6261 17 6 0.8142 3.4369 3.7642 18 7 0.0996 4.1052 4.6913 19 1 0.4051 4.3237 5.5857 20 6 -1.1288 4.4289 4.1699 21 6 -2.2009 5.1647 4.8752 22 6 -3.4069 5.4366 4.2271 23 6 -4.4066 6.1189 4.8894 24 6 -4.2140 6.5441 6.1911 25 6 -3.0159 6.2828 6.8417 26 8 -2.8318 6.7034 8.1208 27 6 -3.9132 7.4079 8.7341 28 6 -2.0082 5.5935 6.1878 29 6 -1.1909 3.9646 2.8957 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 5.8770 0.4827 -2.1133 36 1 2.2720 2.1230 1.9979 37 1 1.8170 3.0566 3.8913 38 1 -3.5589 5.1095 3.2091 39 1 -5.3407 6.3254 4.3882 40 1 -4.9983 7.0817 6.7031 41 1 -3.6358 7.6854 9.7510 42 1 -4.1338 8.3070 8.1590 43 1 -4.7952 6.7680 8.7604 44 1 -1.0754 5.3900 6.6928 45 1 -2.0248 4.0630 2.2164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193863717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:43 Heat of formation + Delta-G solvation = -27.528463 kcal Electronic energy + Delta-G solvation = -26658.547369 eV Core-core repulsion = 22834.093352 eV Total energy + Delta-G solvation = -3824.454017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.41395 -40.93722 -40.23557 -38.27302 -36.96574 -34.36079 -33.49557 -32.73159 -32.32908 -31.29070 -29.56710 -28.63242 -28.03239 -24.94152 -24.08933 -23.74554 -23.22685 -21.83985 -21.18221 -20.65000 -19.85453 -18.69600 -17.93766 -17.33990 -17.21920 -16.98623 -16.79253 -16.65587 -16.23640 -15.91604 -15.37556 -15.26611 -14.92336 -14.83519 -14.64522 -14.48565 -14.07258 -13.93684 -13.69901 -13.60450 -13.53091 -13.20404 -12.95595 -12.86878 -12.73309 -12.51948 -12.35727 -12.07558 -11.85989 -11.82171 -11.35768 -11.19042 -10.83103 -10.71135 -10.50059 -10.01446 -9.63648 -9.33644 -8.66625 -8.35142 -6.39541 -0.08652 0.44221 0.86605 1.28953 1.37285 1.47895 1.60326 2.14078 2.29068 2.30986 2.64229 2.70100 2.90148 3.01428 3.66337 3.81726 4.04691 4.13074 4.18242 4.22697 4.26260 4.29547 4.36407 4.40252 4.41056 4.49353 4.49653 4.59447 4.74185 4.78289 4.92495 4.99603 5.03771 5.06355 5.18064 5.25883 5.29698 5.40263 5.46464 5.48612 5.56172 5.65692 5.73693 5.76340 5.88863 6.21224 6.41396 6.51602 6.62173 7.03309 7.24529 7.61399 8.79761 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.031343 B = 0.002193 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.123725 B =12761.994812 C =13311.234385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C 0.250 3.750 4 H 0.019 0.981 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.029 3.971 8 N -0.933 5.933 9 Si 0.934 3.066 10 H -0.259 1.259 11 H -0.263 1.263 12 H -0.294 1.294 13 N -0.698 5.698 14 C 0.575 3.425 15 O -0.593 6.593 16 C -0.249 4.249 17 C 0.077 3.923 18 N -0.519 5.519 19 H 0.435 0.565 20 C 0.034 3.966 21 C 0.019 3.981 22 C -0.155 4.155 23 C -0.071 4.071 24 C -0.212 4.212 25 C 0.123 3.877 26 O -0.336 6.336 27 C 0.018 3.982 28 C -0.169 4.169 29 C -0.125 4.125 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.269 0.731 36 H 0.404 0.596 37 H 0.209 0.791 38 H 0.132 0.868 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.117 0.883 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.134 0.866 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.613 11.412 22.254 31.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 C 0.145 3.855 4 H 0.037 0.963 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.762 3.238 10 H -0.185 1.185 11 H -0.188 1.188 12 H -0.221 1.221 13 N -0.346 5.346 14 C 0.365 3.635 15 O -0.476 6.476 16 C -0.259 4.259 17 C -0.063 4.063 18 N -0.114 5.114 19 H 0.277 0.723 20 C -0.076 4.076 21 C 0.018 3.982 22 C -0.174 4.174 23 C -0.089 4.089 24 C -0.231 4.231 25 C 0.077 3.923 26 O -0.250 6.250 27 C -0.076 4.076 28 C -0.188 4.188 29 C -0.149 4.149 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.240 0.760 37 H 0.226 0.774 38 H 0.150 0.850 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.135 0.865 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.152 0.848 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.788 11.364 21.784 31.548 hybrid contribution 0.374 -0.264 -0.439 0.634 sum -19.414 11.101 21.345 30.915 Atomic orbital electron populations 1.21754 0.95422 1.00370 1.01535 1.22197 0.95672 0.98546 1.01004 1.18766 0.93215 0.89590 0.83931 0.96310 1.21286 0.90234 1.38264 1.06934 0.92243 1.25522 0.95716 0.95986 0.99801 1.69971 1.10134 1.46293 1.30816 0.86069 0.79307 0.79996 0.78456 1.18501 1.18752 1.22113 1.45793 1.15495 1.56430 1.16897 1.17872 0.81284 0.77361 0.86981 1.90694 1.52828 1.62141 1.41889 1.19642 0.98538 1.12686 0.94998 1.22720 0.98508 0.97394 0.87659 1.41624 1.11831 1.42891 1.15037 0.72347 1.18524 0.87712 1.07685 0.93702 1.17803 0.92227 0.95943 0.92244 1.21262 0.92941 1.02038 1.01186 1.21173 0.99200 0.94799 0.93708 1.21595 0.97715 1.06670 0.97099 1.18956 0.94183 0.94686 0.84435 1.86042 1.43472 1.71121 1.24382 1.23355 0.89151 0.95996 0.99138 1.20375 1.00056 1.04147 0.94222 1.20964 0.97827 1.01115 0.95042 0.92845 0.94642 0.92346 0.93877 0.91152 0.92158 0.76035 0.77431 0.85034 0.82821 0.82960 0.86466 0.91580 0.91543 0.84770 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.44 8.51 71.98 0.61 -4.83 16 2 C -0.14 -6.03 5.11 30.60 0.16 -5.87 16 3 C 0.25 12.11 1.83 44.24 0.08 12.19 16 4 H 0.02 1.04 6.63 -2.39 -0.02 1.02 16 5 C -0.53 -29.03 9.31 25.60 0.24 -28.80 16 6 H 0.06 3.42 7.98 -2.91 -0.02 3.40 16 7 C 0.03 1.67 5.45 84.65 0.46 2.14 16 8 N -0.93 -56.21 13.96 21.45 0.30 -55.91 16 9 Si 0.93 45.63 24.41 68.60 1.67 47.31 16 10 H -0.26 -11.89 6.83 99.48 0.68 -11.21 16 11 H -0.26 -12.91 6.53 99.48 0.65 -12.26 16 12 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 13 N -0.70 -28.12 5.01 -449.47 -2.25 -30.37 16 14 C 0.58 23.03 6.38 86.63 0.55 23.59 16 15 O -0.59 -28.08 14.06 -4.10 -0.06 -28.14 16 16 C -0.25 -7.79 6.14 -20.08 -0.12 -7.91 16 17 C 0.08 1.70 11.44 84.14 0.96 2.66 16 18 N -0.52 -9.47 5.89 -183.01 -1.08 -10.55 16 19 H 0.44 4.79 8.02 -92.70 -0.74 4.04 16 20 C 0.03 0.78 6.89 40.27 0.28 1.05 16 21 C 0.02 0.39 5.87 -20.10 -0.12 0.27 16 22 C -0.16 -2.95 9.55 22.53 0.22 -2.74 16 23 C -0.07 -1.04 10.03 22.22 0.22 -0.82 16 24 C -0.21 -2.96 9.03 22.42 0.20 -2.76 16 25 C 0.12 2.10 6.68 22.47 0.15 2.25 16 26 O -0.34 -5.26 10.49 -92.45 -0.97 -6.23 16 27 C 0.02 0.13 9.81 113.37 1.11 1.24 16 28 C -0.17 -3.11 9.64 22.62 0.22 -2.89 16 29 C -0.13 -3.64 10.02 22.60 0.23 -3.42 16 30 H 0.05 2.18 5.64 -2.39 -0.01 2.17 16 31 H 0.03 1.54 7.84 -2.39 -0.02 1.52 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.99 3.22 -2.38 -0.01 1.99 16 34 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 35 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.40 13.83 7.45 -92.71 -0.69 13.14 16 37 H 0.21 3.20 7.44 -2.91 -0.02 3.18 16 38 H 0.13 2.44 6.96 -2.91 -0.02 2.42 16 39 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.15 1.26 6.28 -2.91 -0.02 1.25 16 41 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 43 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 44 H 0.13 2.02 7.13 -2.91 -0.02 2.00 16 45 H 0.14 4.14 7.23 -2.91 -0.02 4.12 16 Total: -1.00 -76.00 363.92 2.60 -73.41 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.47 Total: 25.11 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 5.45 Total: -14.63 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -3.03 Total: -96.83 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -1.03 Total: -34.37 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.67 Total: 47.31 kcal Total: -76.00 2.60 -73.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193863717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.881 kcal (2) G-P(sol) polarization free energy of solvation -76.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds