Wall clock time and date at job start Tue Mar 31 2020 14:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00301 * 2 1 4 4 C 1.52996 * 109.47369 * 125.00229 * 3 2 1 5 5 O 1.42904 * 109.47377 * 180.02562 * 4 3 2 6 6 C 1.35711 * 117.00220 * 180.02562 * 5 4 3 7 7 C 1.39002 * 119.90955 * 0.29057 * 6 5 4 8 8 C 1.37701 * 120.08650 * 180.25938 * 7 6 5 9 9 C 1.39741 * 119.90999 * 359.45180 * 8 7 6 10 10 C 1.47598 * 120.08325 * 180.29903 * 9 8 7 11 11 O 1.21585 * 120.00320 * 330.13841 * 10 9 8 12 12 N 1.34782 * 119.99755 * 150.14778 * 10 9 8 13 13 C 1.46504 * 119.99756 * 6.16070 * 12 10 9 14 14 C 1.50696 * 109.47361 * 98.23590 * 13 12 10 15 15 H 1.08001 * 119.99522 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00414 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00305 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99779 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46888 * 90.00088 * 18 16 14 20 20 H 1.48494 * 109.47276 * 210.00517 * 18 16 14 21 21 H 1.48501 * 109.47018 * 330.00327 * 18 16 14 22 22 C 1.46498 * 120.00203 * 186.16425 * 12 10 9 23 23 C 1.52997 * 109.47275 * 91.20031 * 22 12 10 24 24 C 1.47202 * 109.47046 * 180.02562 * 23 22 12 25 25 N 9.61873 * 153.34479 * 293.54852 * 6 1 2 26 26 C 1.39735 * 119.82439 * 0.27389 * 9 8 7 27 27 C 1.37702 * 119.91066 * 0.02562 * 26 9 8 28 28 H 1.08001 * 120.00121 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99776 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00269 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46972 * 5.00366 * 3 2 1 32 32 H 1.08996 * 109.47532 * 245.00636 * 3 2 1 33 33 H 1.08999 * 109.46962 * 60.00130 * 4 3 2 34 34 H 1.09002 * 109.47019 * 300.00229 * 4 3 2 35 35 H 1.07998 * 119.95622 * 0.02562 * 7 6 5 36 36 H 1.07998 * 120.04767 * 179.72222 * 8 7 6 37 37 H 1.09002 * 109.46816 * 218.23525 * 13 12 10 38 38 H 1.08999 * 109.47366 * 338.23196 * 13 12 10 39 39 H 0.96996 * 120.00015 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.47183 * 211.19990 * 22 12 10 41 41 H 1.09003 * 109.46815 * 331.19838 * 22 12 10 42 42 H 1.09003 * 109.46981 * 300.00082 * 23 22 12 43 43 H 1.08989 * 109.47212 * 60.00221 * 23 22 12 44 44 H 1.07995 * 120.04663 * 180.02562 * 26 9 8 45 45 H 1.07992 * 119.95793 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1815 5 8 3.7493 2.5708 1.1819 6 6 4.6583 2.7574 2.1721 7 6 4.8625 1.7633 3.1220 8 6 5.7801 1.9509 4.1313 9 6 6.5148 3.1380 4.1933 10 6 7.5042 3.3404 5.2698 11 8 7.3397 2.8142 6.3534 12 7 8.5898 4.1087 5.0514 13 6 8.7212 4.8510 3.7953 14 6 8.2847 6.2778 4.0068 15 1 7.9431 6.5993 4.9797 16 6 8.3203 7.1724 2.9583 17 7 7.9399 8.4176 3.1431 18 14 8.9105 6.6160 1.2756 19 1 7.7558 6.1179 0.4859 20 1 9.5376 7.7608 0.5675 21 1 9.9073 5.5270 1.4357 22 6 9.6385 4.2015 6.0702 23 6 10.6964 3.1267 5.8125 24 6 11.7497 3.2195 6.8366 25 7 12.5614 3.2918 7.6288 26 6 6.3108 4.1325 3.2332 27 6 5.3868 3.9397 2.2305 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6212 1.4026 -0.9314 33 1 3.7400 0.5065 1.0919 34 1 2.4773 1.2355 2.1130 35 1 4.2979 0.8441 3.0704 36 1 5.9349 1.1800 4.8716 37 1 9.7615 4.8338 3.4702 38 1 8.0946 4.3886 3.0327 39 1 7.9646 9.0468 2.4054 40 1 10.1029 5.1866 6.0250 41 1 9.2006 4.0511 7.0570 42 1 10.2320 2.1415 5.8577 43 1 11.1342 3.2770 4.8259 44 1 6.8769 5.0511 3.2774 45 1 5.2288 4.7076 1.4879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195130911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:33 Heat of formation + Delta-G solvation = 21.039281 kcal Electronic energy + Delta-G solvation = -26995.850433 eV Core-core repulsion = 23173.502472 eV Total energy + Delta-G solvation = -3822.347961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.35189 -39.37059 -37.18123 -36.60135 -35.54264 -35.34939 -33.07348 -31.76269 -30.96137 -30.05094 -29.02913 -28.12767 -24.58169 -24.19771 -22.94873 -22.07776 -21.60925 -20.18736 -19.07978 -17.97819 -17.65917 -17.03582 -16.79323 -16.40223 -16.01526 -15.54201 -15.17471 -14.83399 -14.64077 -14.35693 -14.13922 -13.96746 -13.68676 -13.58398 -13.32510 -13.05661 -12.79379 -12.67693 -12.56857 -12.36081 -12.20208 -12.07549 -11.79861 -11.60984 -11.49098 -11.26276 -11.09031 -10.90321 -10.74867 -10.66845 -10.39808 -10.10216 -9.77899 -9.76435 -9.30130 -8.95489 -8.59211 -8.07796 -7.89162 -6.39839 -4.44437 1.33156 1.66227 1.83785 2.80005 2.90771 3.08161 3.15960 3.17139 3.19219 3.29374 3.56562 4.10970 4.16645 4.30273 4.54687 4.66957 4.77630 4.88153 4.92575 4.99683 5.06387 5.11297 5.16208 5.27082 5.31906 5.44420 5.55584 5.57243 5.60098 5.70390 5.76029 5.98250 6.09248 6.22261 6.22762 6.25544 6.34289 6.34847 6.48910 6.51642 6.57989 6.82102 7.08190 7.12169 7.25661 7.50945 7.67116 7.90423 8.22791 8.66654 8.74957 9.16095 10.71188 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.003277 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.189143 B = 8543.051340 C =10444.772539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.155 4.155 3 C -0.094 4.094 4 C 0.063 3.937 5 O -0.315 6.315 6 C 0.147 3.853 7 C -0.232 4.232 8 C -0.027 4.027 9 C -0.171 4.171 10 C 0.567 3.433 11 O -0.562 6.562 12 N -0.585 5.585 13 C 0.178 3.822 14 C -0.551 4.551 15 H 0.085 0.915 16 C 0.083 3.917 17 N -0.875 5.875 18 Si 0.859 3.141 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.259 1.259 22 C 0.125 3.875 23 C -0.046 4.046 24 C 0.220 3.780 25 N -0.448 5.448 26 C -0.062 4.062 27 C -0.168 4.168 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.271 0.729 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.203 0.797 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 -14.534 -7.683 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.229 6.229 6 C 0.101 3.899 7 C -0.251 4.251 8 C -0.046 4.046 9 C -0.175 4.175 10 C 0.357 3.643 11 O -0.443 6.443 12 N -0.314 5.314 13 C 0.058 3.942 14 C -0.588 4.588 15 H 0.103 0.897 16 C -0.124 4.124 17 N -0.511 5.511 18 Si 0.684 3.316 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.183 1.183 22 C 0.000 4.000 23 C -0.087 4.087 24 C -0.098 4.098 25 N -0.125 5.125 26 C -0.079 4.079 27 C -0.187 4.187 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.219 0.781 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.477 -14.358 -6.194 17.333 hybrid contribution -0.117 -0.326 -1.255 1.302 sum -7.595 -14.684 -7.449 18.132 Atomic orbital electron populations 1.23927 0.95865 1.02170 1.00248 1.22760 0.96015 0.97856 1.00644 1.20670 0.97879 0.96267 0.98301 1.22719 0.93996 0.85304 0.99253 1.86004 1.50803 1.38414 1.47649 1.19328 0.88897 0.94402 0.87260 1.21008 1.05050 1.00210 0.98844 1.20910 0.92108 0.96003 0.95583 1.19797 1.01786 0.96943 0.98937 1.18188 0.81065 0.78038 0.87027 1.90701 1.76873 1.51464 1.25303 1.47683 1.18897 1.45431 1.19356 1.20738 0.98640 0.92493 0.82371 1.21327 1.45747 0.92119 0.99625 0.89720 1.24919 0.93980 0.94641 0.98818 1.69872 1.44837 1.03580 1.32791 0.87098 0.80469 0.79417 0.84615 1.18991 1.20526 1.18337 1.21156 0.87486 0.98164 0.93234 1.19769 0.91216 1.03350 0.94362 1.29070 0.93859 0.92871 0.93958 1.81207 1.11442 1.09028 1.10816 1.23322 0.93353 1.01581 0.89601 1.20549 0.99141 0.96429 1.02540 0.88204 0.88321 0.87030 0.90288 0.89776 0.91857 0.91824 0.85603 0.85298 0.94729 0.92348 0.91904 0.88756 0.89453 0.87394 0.87093 0.78137 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.18 14.32 29.02 0.42 -0.76 16 2 C -0.15 -1.06 9.52 -36.03 -0.34 -1.40 16 3 C -0.09 -0.76 6.03 -27.89 -0.17 -0.93 16 4 C 0.06 0.61 4.72 37.16 0.18 0.78 16 5 O -0.32 -4.27 10.12 -18.84 -0.19 -4.46 16 6 C 0.15 2.21 6.70 -39.02 -0.26 1.95 16 7 C -0.23 -3.21 9.01 -39.49 -0.36 -3.57 16 8 C -0.03 -0.42 9.59 -39.22 -0.38 -0.79 16 9 C -0.17 -3.07 5.58 -104.96 -0.59 -3.65 16 10 C 0.57 10.78 7.45 -12.44 -0.09 10.69 16 11 O -0.56 -11.62 16.24 5.29 0.09 -11.53 16 12 N -0.58 -10.55 2.47 -176.26 -0.43 -10.99 16 13 C 0.18 3.46 3.72 -5.19 -0.02 3.44 16 14 C -0.55 -12.96 8.03 -34.44 -0.28 -13.24 16 15 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 16 C 0.08 2.02 5.34 -17.82 -0.10 1.93 16 17 N -0.88 -23.48 13.96 55.43 0.77 -22.71 16 18 Si 0.86 17.83 27.35 -169.99 -4.65 13.18 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.26 -5.02 6.54 56.52 0.37 -4.65 16 22 C 0.12 1.94 5.43 -4.04 -0.02 1.92 16 23 C -0.05 -0.56 6.03 -29.52 -0.18 -0.73 16 24 C 0.22 3.07 15.44 -20.74 -0.32 2.75 16 25 N -0.45 -7.33 18.54 42.17 0.78 -6.55 16 26 C -0.06 -1.14 7.47 -39.22 -0.29 -1.43 16 27 C -0.17 -2.84 9.97 -39.50 -0.39 -3.24 16 28 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 29 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 30 H 0.11 0.65 8.06 -52.49 -0.42 0.23 16 31 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.55 7.64 -51.93 -0.40 0.15 16 34 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 35 H 0.13 1.37 6.28 -52.49 -0.33 1.04 16 36 H 0.13 1.82 7.92 -52.49 -0.42 1.41 16 37 H 0.03 0.64 7.19 -51.93 -0.37 0.27 16 38 H 0.06 1.12 3.50 -51.98 -0.18 0.94 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.09 1.49 8.08 -51.93 -0.42 1.07 16 41 H 0.09 1.42 7.31 -51.93 -0.38 1.04 16 42 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.11 1.18 8.14 -51.94 -0.42 0.76 16 44 H 0.20 4.14 2.90 -52.49 -0.15 3.99 16 45 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -28.96 382.84 -7.04 -36.00 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.99 Total: 7.58 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -3.19 Total: -6.29 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 1.12 Total: -40.25 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.10 Total: -15.99 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -4.65 Total: 13.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.96 -7.04 -36.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195130911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.038 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds